mRNA_S-ischiensis_contig9.20644.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20644.1
Unique NamemRNA_S-ischiensis_contig9.20644.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2239862..2241247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1270
Cds size807
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20644.1prot_S-ischiensis_contig9.20644.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2240120..2241042 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.193457-UTR-S-ischiensis_contig9:2239861..22401191622817367.193457-UTR-S-ischiensis_contig9:2239861..2240119Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2239862..2240119 +
1695741060.756345-UTR-S-ischiensis_contig9:2239861..22401191695741060.756345-UTR-S-ischiensis_contig9:2239861..2240119Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2239862..2240119 +
1622817367.2286236-UTR-S-ischiensis_contig9:2241042..22412471622817367.2286236-UTR-S-ischiensis_contig9:2241042..2241247Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2241043..2241247 +
1695741060.7869914-UTR-S-ischiensis_contig9:2241042..22412471695741060.7869914-UTR-S-ischiensis_contig9:2241042..2241247Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2241043..2241247 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.204921-CDS-S-ischiensis_contig9:2240119..22406831622817367.204921-CDS-S-ischiensis_contig9:2240119..2240683Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2240120..2240683 +
1695741060.7660136-CDS-S-ischiensis_contig9:2240119..22406831695741060.7660136-CDS-S-ischiensis_contig9:2240119..2240683Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2240120..2240683 +
1622817367.218191-CDS-S-ischiensis_contig9:2240799..22410421622817367.218191-CDS-S-ischiensis_contig9:2240799..2241042Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2240800..2241042 +
1695741060.775666-CDS-S-ischiensis_contig9:2240799..22410421695741060.775666-CDS-S-ischiensis_contig9:2240799..2241042Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2240800..2241042 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20644.1

>prot_S-ischiensis_contig9.20644.1 ID=prot_S-ischiensis_contig9.20644.1|Name=mRNA_S-ischiensis_contig9.20644.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=269bp
MGPPGPVAVPAIQAGGGFSGPGEAGHGPGPGPSEAPRGPDGGPSAAAAAP
TAGARPRAAAPPPQHLGQVPLSTYHRHAEGDDVAFTAETPVGVSGVSGQA
GSEDTAPAKRSAMGGVSWGQEYAPVGPLGPALAAASIRGSAGQGLAGGGG
PGPKDGDGGPGPGPGQAAVGGGVSWETVSWGQPADPPQVGPLAAASLWSS
TEGRAGAGGAGDSLGGPGAGSGLAADGLGVAWASESDYPALGSALTAGGG
GERVASGDAVAAAAASSA*
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mRNA from alignment at S-ischiensis_contig9:2239862..2241247+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20644.1 ID=mRNA_S-ischiensis_contig9.20644.1|Name=mRNA_S-ischiensis_contig9.20644.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1386bp|location=Sequence derived from alignment at S-ischiensis_contig9:2239862..2241247+ (Schizocladia ischiensis KU_0333)
TATGCCGATACCTACCATAGCCAAGGGGTGGGCGTCGGCGGCGGAGCTGC
CGGCGGCGTGGGCGGTGGCGGCGACTACGTCGGCACCTACCACAGCAACG
AAGGCGGCGGCAGCCGCCCCCCCGTTGCCGCCACGGCCGGCATCGATCCC
GCGTGGGGCCAGGAACACGACCGGCTGGGCTATCATGGGCCCGGGGGTCA
GCACGGCCACCTTGTGGGCCCGGGCGCGGGCGGCGGCGGCGGCGGCGGCG
GGGTGTGGATGGGCCCTCCTGGCCCAGTTGCCGTCCCTGCCATCCAGGCT
GGTGGGGGGTTTAGCGGCCCTGGGGAGGCGGGGCACGGCCCTGGGCCAGG
GCCCAGCGAGGCCCCCCGGGGGCCTGACGGGGGCCCTTCCGCCGCCGCCG
CTGCTCCCACGGCGGGGGCCAGGCCTCGGGCGGCGGCGCCGCCGCCGCAG
CACCTCGGCCAAGTGCCGCTCTCGACGTACCATCGCCATGCCGAGGGTGA
TGATGTCGCCTTCACCGCCGAAACCCCCGTGGGCGTGAGCGGCGTGAGCG
GGCAGGCCGGCTCGGAAGACACTGCCCCGGCCAAGAGGTCAGCGATGGGC
GGGGTGTCTTGGGGGCAGGAGTACGCCCCCGTGGGCCCGCTGGGCCCGGC
GCTGGCCGCGGCGTCCATCCGAGGGTCCGCCGGGCAGGGCCTGGCTGGGG
GGGGCGGACCTGGGCCCAAGGACGGGGACGGTGGGCCCGGACCAGGGCCA
GGCCAGGCGGCCGTAGGAGGAGGAGTGTCGTGGGAGACCGTGTCATGGGG
GCAACCTGCGGATCCCCCGCAGGTGGGTAATTAGCCATGGCACAAAAGTG
CGTTTTTTTTTGCCCACATACTGTAGTTTAGTGCGATACAGTATTGATTT
TTTTTAACGTCGTACTTTTGGACCATGGGTACCCGCAGGTGGGCCCTCTG
GCAGCTGCCTCCCTCTGGAGCTCCACCGAGGGCAGGGCCGGGGCCGGCGG
CGCCGGGGACAGCCTGGGCGGGCCTGGGGCCGGGTCAGGCCTGGCGGCCG
ACGGCTTGGGGGTGGCGTGGGCGTCTGAGTCCGACTACCCCGCGCTGGGC
TCGGCGCTCACCGCCGGGGGGGGCGGAGAACGAGTCGCCTCTGGAGACGC
CGTCGCTGCCGCTGCAGCATCATCTGCATGACCTCGAAGGGGAAGGAGAG
GCCCACAGCTCGGGCCCGTCGTCGGAGGGCCTGGCCGGGGCCAAGCGGCA
GCTGGGCAGCTCGTTGGTGTCTTGGGATCTGCATGTCCTAGGGGGGCGGC
GGCCGCCGCTGCCGGCGCCGTCGTTGTCGCCGGTGCCGCCGCGCCCCAAG
TTGTTGAGCACCGGCCTGGCGGAGGACGAGGCCCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2239862..2241247+

>mRNA_S-ischiensis_contig9.20644.1 ID=mRNA_S-ischiensis_contig9.20644.1|Name=mRNA_S-ischiensis_contig9.20644.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1614bp|location=Sequence derived from alignment at S-ischiensis_contig9:2239862..2241247+ (Schizocladia ischiensis KU_0333)
ATGGGCCCTCCTGGCCCAGTTGCCGTCCCTGCCATCCAGGCTGGTGGGGG
GTTTAGCGGCCCTGGGGAGGCGGGGCACGGCCCTGGGCCAGGGCCCAGCG
AGGCCCCCCGGGGGCCTGACGGGGGCCCTTCCGCCGCCGCCGCTGCTCCC
ACGGCGGGGGCCAGGCCTCGGGCGGCGGCGCCGCCGCCGCAGCACCTCGG
CCAAGTGCCGCTCTCGACGTACCATCGCCATGCCGAGGGTGATGATGTCG
CCTTCACCGCCGAAACCCCCGTGGGCGTGAGCGGCGTGAGCGGGCAGGCC
GGCTCGGAAGACACTGCCCCGGCCAAGAGGTCAGCGATGGGCGGGGTGTC
TTGGGGGCAGGAGTACGCCCCCGTGGGCCCGCTGGGCCCGGCGCTGGCCG
CGGCGTCCATCCGAGGGTCCGCCGGGCAGGGCCTGGCTGGGGGGGGCGGA
CCTGGGCCCAAGGACGGGGACGGTGGGCCCGGACCAGGGCCAGGCCAGGC
GGCCGTAGGAGGAGGAGTGTCGTGGGAGACCGTGTCATGGGGGCAACCTG
CGGATCCCCCGCAGATGGGCCCTCCTGGCCCAGTTGCCGTCCCTGCCATC
CAGGCTGGTGGGGGGTTTAGCGGCCCTGGGGAGGCGGGGCACGGCCCTGG
GCCAGGGCCCAGCGAGGCCCCCCGGGGGCCTGACGGGGGCCCTTCCGCCG
CCGCCGCTGCTCCCACGGCGGGGGCCAGGCCTCGGGCGGCGGCGCCGCCG
CCGCAGCACCTCGGCCAAGTGCCGCTCTCGACGTACCATCGCCATGCCGA
GGGTGATGATGTCGCCTTCACCGCCGAAACCCCCGTGGGCGTGAGCGGCG
TGAGCGGGCAGGCCGGCTCGGAAGACACTGCCCCGGCCAAGAGGTCAGCG
ATGGGCGGGGTGTCTTGGGGGCAGGAGTACGCCCCCGTGGGCCCGCTGGG
CCCGGCGCTGGCCGCGGCGTCCATCCGAGGGTCCGCCGGGCAGGGCCTGG
CTGGGGGGGGCGGACCTGGGCCCAAGGACGGGGACGGTGGGCCCGGACCA
GGGCCAGGCCAGGCGGCCGTAGGAGGAGGAGTGTCGTGGGAGACCGTGTC
ATGGGGGCAACCTGCGGATCCCCCGCAGGTGGGCCCTCTGGCAGCTGCCT
CCCTCTGGAGCTCCACCGAGGGCAGGGCCGGGGCCGGCGGCGCCGGGGAC
AGCCTGGGCGGGCCTGGGGCCGGGTCAGGCCTGGCGGCCGACGGCTTGGG
GGTGGCGTGGGCGTCTGAGTCCGACTACCCCGCGCTGGGCTCGGCGCTCA
CCGCCGGGGGGGGCGGAGAACGAGTCGCCTCTGGAGACGCCGTCGCTGCC
GCTGCAGCATCATCTGCATGAGTGGGCCCTCTGGCAGCTGCCTCCCTCTG
GAGCTCCACCGAGGGCAGGGCCGGGGCCGGCGGCGCCGGGGACAGCCTGG
GCGGGCCTGGGGCCGGGTCAGGCCTGGCGGCCGACGGCTTGGGGGTGGCG
TGGGCGTCTGAGTCCGACTACCCCGCGCTGGGCTCGGCGCTCACCGCCGG
GGGGGGCGGAGAACGAGTCGCCTCTGGAGACGCCGTCGCTGCCGCTGCAG
CATCATCTGCATGA
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