mRNA_S-ischiensis_contig9.20640.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20640.1
Unique NamemRNA_S-ischiensis_contig9.20640.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20640.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2200153..2201026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size874
Cds size696
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20640.1prot_S-ischiensis_contig9.20640.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2200312..2201007 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.468857-UTR-S-ischiensis_contig9:2200152..22003111622817372.468857-UTR-S-ischiensis_contig9:2200152..2200311Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2200153..2200311 +
1695741063.835801-UTR-S-ischiensis_contig9:2200152..22003111695741063.835801-UTR-S-ischiensis_contig9:2200152..2200311Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2200153..2200311 +
1622817372.496514-UTR-S-ischiensis_contig9:2201007..22010261622817372.496514-UTR-S-ischiensis_contig9:2201007..2201026Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2201008..2201026 +
1695741063.8614254-UTR-S-ischiensis_contig9:2201007..22010261695741063.8614254-UTR-S-ischiensis_contig9:2201007..2201026Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2201008..2201026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.4831502-CDS-S-ischiensis_contig9:2200311..22010071622817372.4831502-CDS-S-ischiensis_contig9:2200311..2201007Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2200312..2201007 +
1695741063.8489478-CDS-S-ischiensis_contig9:2200311..22010071695741063.8489478-CDS-S-ischiensis_contig9:2200311..2201007Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2200312..2201007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20640.1

>prot_S-ischiensis_contig9.20640.1 ID=prot_S-ischiensis_contig9.20640.1|Name=mRNA_S-ischiensis_contig9.20640.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=232bp
MGRWHNDCRSSPPPKLMGSWGSDTDNWTSRGRAGFHGMPCLSRCSCSVTP
LLTLCGTKALWVVTRVVQDHVRHQCGQNVNGTGWYPSHLGPGASQRPGPA
PGPGALEPQSQSPGLCEPQEQGPRPAPGPGAGASAVYHGHQAGVWFPPSS
SCEVHCLGRAIRALGGIARHDAARTPRPARLSGPGTVCQGSLHLWSTLQL
CSVLLRAGSMAPIAVDPDHLHKCVSAARCDR*
back to top

mRNA from alignment at S-ischiensis_contig9:2200153..2201026+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20640.1 ID=mRNA_S-ischiensis_contig9.20640.1|Name=mRNA_S-ischiensis_contig9.20640.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=874bp|location=Sequence derived from alignment at S-ischiensis_contig9:2200153..2201026+ (Schizocladia ischiensis KU_0333)
CATGAAAGGAGGCCACCTCTCTGAGGGTTATGGGAGCACACAGGGCGACC
TGCCGGCTCTGTCGTGACTCGCCAAAAATGCTCCATTGCCCTTGCCCCGG
CAGATGGTCATGGTCACCACTGCTGCCGACCACCAGTGGTGTGAGCGGCA
CGTGTGGCTATGGGGCGCTGGCACAACGATTGCCGCAGCTCCCCCCCCCC
CAAGCTGATGGGGTCCTGGGGCTCCGATACGGACAACTGGACCTCCCGAG
GTCGTGCAGGCTTTCACGGCATGCCGTGCCTTTCACGGTGCTCATGCTCA
GTCACACCTCTGCTAACCCTGTGTGGAACCAAAGCTCTATGGGTCGTGAC
GCGTGTGGTTCAGGATCACGTTCGACACCAGTGCGGCCAAAATGTTAACG
GCACGGGCTGGTATCCTTCTCATCTTGGCCCAGGGGCATCACAGAGGCCG
GGGCCGGCACCAGGCCCGGGGGCTCTGGAACCACAATCACAGAGCCCGGG
GCTGTGCGAACCACAAGAACAGGGCCCCCGGCCGGCACCAGGCCCGGGGG
CGGGCGCATCAGCCGTTTATCATGGGCATCAGGCAGGGGTATGGTTCCCT
CCGAGTTCAAGCTGTGAGGTGCACTGCCTTGGGCGTGCTATCCGAGCGCT
CGGGGGAATTGCACGGCACGATGCGGCCCGAACGCCCCGTCCAGCAAGGT
TGTCCGGACCTGGCACCGTATGCCAAGGCTCACTGCACCTATGGAGCACG
CTGCAGCTATGTTCTGTTCTACTGAGGGCTGGATCGATGGCGCCCATCGC
TGTGGACCCGGATCATCTGCACAAATGTGTGTCTGCCGCAAGGTGTGACC
GCTGAGCTGCAGCCCGGCCAGGGA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:2200153..2201026+

>mRNA_S-ischiensis_contig9.20640.1 ID=mRNA_S-ischiensis_contig9.20640.1|Name=mRNA_S-ischiensis_contig9.20640.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1392bp|location=Sequence derived from alignment at S-ischiensis_contig9:2200153..2201026+ (Schizocladia ischiensis KU_0333)
ATGGGGCGCTGGCACAACGATTGCCGCAGCTCCCCCCCCCCCAAGCTGAT
GGGGTCCTGGGGCTCCGATACGGACAACTGGACCTCCCGAGGTCGTGCAG
GCTTTCACGGCATGCCGTGCCTTTCACGGTGCTCATGCTCAGTCACACCT
CTGCTAACCCTGTGTGGAACCAAAGCTCTATGGGTCGTGACGCGTGTGGT
TCAGGATCACGTTCGACACCAGTGCGGCCAAAATGTTAACGGCACGGGCT
GGTATCCTTCTCATCTTGGCCCAGGGGCATCACAGAGGCCGGGGCCGGCA
CCAGGCCCGGGGGCTCTGGAACCACAATCACAGAGCCCGGGGCTGTGCGA
ACCACAAGAACAGGGCCCCCGGCCGGCACCAGGCCCGGGGGCGGGCGCAT
CAGCCGTTTATCATGGGCATCAGGCAGGGGTATGGTTCCCTCCGAGTTCA
AGCTGTGAGGTGCACTGCCTTGGGCGTGCTATCCGAGCGCTCGGGGGAAT
TGCACGGCACGATGCGGCCCGAACGCCCCGTCCAGCAAGGTTGTCCGGAC
CTGGCACCGTATGCCAAGGCTCACTGCACCTATGGAGCACGCTGCAGCTA
TGTTCTGTTCTACTGAGGGCTGGATCGATGGCGCCCATCGCTGTGGACCC
GGATCATCTGCACAAATGTGTGTCTGCCGCAAGGTGTGACCGCTGAATGG
GGCGCTGGCACAACGATTGCCGCAGCTCCCCCCCCCCCAAGCTGATGGGG
TCCTGGGGCTCCGATACGGACAACTGGACCTCCCGAGGTCGTGCAGGCTT
TCACGGCATGCCGTGCCTTTCACGGTGCTCATGCTCAGTCACACCTCTGC
TAACCCTGTGTGGAACCAAAGCTCTATGGGTCGTGACGCGTGTGGTTCAG
GATCACGTTCGACACCAGTGCGGCCAAAATGTTAACGGCACGGGCTGGTA
TCCTTCTCATCTTGGCCCAGGGGCATCACAGAGGCCGGGGCCGGCACCAG
GCCCGGGGGCTCTGGAACCACAATCACAGAGCCCGGGGCTGTGCGAACCA
CAAGAACAGGGCCCCCGGCCGGCACCAGGCCCGGGGGCGGGCGCATCAGC
CGTTTATCATGGGCATCAGGCAGGGGTATGGTTCCCTCCGAGTTCAAGCT
GTGAGGTGCACTGCCTTGGGCGTGCTATCCGAGCGCTCGGGGGAATTGCA
CGGCACGATGCGGCCCGAACGCCCCGTCCAGCAAGGTTGTCCGGACCTGG
CACCGTATGCCAAGGCTCACTGCACCTATGGAGCACGCTGCAGCTATGTT
CTGTTCTACTGAGGGCTGGATCGATGGCGCCCATCGCTGTGGACCCGGAT
CATCTGCACAAATGTGTGTCTGCCGCAAGGTGTGACCGCTGA
back to top