mRNA_S-ischiensis_contig9.20637.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20637.1
Unique NamemRNA_S-ischiensis_contig9.20637.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
[Close]
BLAST of mRNA_S-ischiensis_contig9.20637.1 vs. uniprot
Match: D7FR20_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR20_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 1.930e-50
Identity = 101/229 (44.10%), Postives = 133/229 (58.08%), Query Frame = 1 
Query:  178 MALTDEQYNTLYSLGTSIVQK--QVSDLLDDEEELAATLDGLSDAWMRREYRLRPLPDKATPSHWVTEVDNFLRERFAREEEKRVVAGKEYMDGVAKEEGVFRTDSGLIVQHIKEGVGARPSPTDMVKVHFHGYFPDGRVFDSSVSKGSPIVFPINGVIMGWQEGLQLMRVGGKSKLVVPPELGYGKSTLNEVPPSSTLVFELELLSIE*TRPGGDCGAPLAVPLIEES 858
            MAL  E+   +Y+ G ++  +  Q   LL  EE     + G SD W+    +L         S +  +V+N L+ R    E+     G  ++   AKEEG  +T SG++VQ + EG GA P PTD VKVH+HG   DG VFDSSV +GSPI FP+NGVI GW EG+QLM+VGGKSKL +PPEL YG+     +P ++TLVFE+ELL IE     G    P A P  E +
Sbjct:   55 MALESEEDKCMYAFGAALATQTDQFRKLLTVEERKIGLM-GFSDHWLESGMQL-------DHSQYAEKVNNILQARNEALEKSMAEKGVGFLADAAKEEGAVQTASGMVVQTVVEGTGASPLPTDTVKVHYHGTLIDGSVFDSSVMRGSPISFPLNGVIKGWTEGVQLMKVGGKSKLTIPPELAYGEKGTGPIPANATLVFEVELLEIE-----GGAPTPQAAPSTEAA 270
[Close]
BLAST of mRNA_S-ischiensis_contig9.20637.1 vs. uniprot
Match: A0A835ZCE7_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCE7_9STRA)

HSP 1 Score: 170 bits (431), Expect = 8.420e-49
Identity = 88/199 (44.22%), Postives = 123/199 (61.81%), Query Frame = 1 
Query:  205 TLYSLGTSIVQK--QVSDLLDDEEELAATLDGLSDAWMRREYRLRPLPDKATPSHWVTEVDNFLRERFAREEEKRVVAGKEYMDGVAKEEGVFRTDSGLIVQHIKEGVGARPSPTDMVKVHFHGYFPDGRVFDSSVSKGSPIVFPINGVIMGWQEGLQLMRVGGKSKLVVPPELGYGKSTLNEVPPSSTLVFELELLSI 795
            T Y+LG ++ Q+  +  DLL  EE     + G++D W+ +       P K  P     +V+  L +R ++  E+   AG +++   AKE+G  +T SGL+++ IKEG G  P  TD V+V++HG  PD  VFDSS  +G PI FP+NGVI GW EGLQLM+VGG +KL +PPEL YG      +PP +TLVFE+ELL I
Sbjct:   13 TFYALGVALAQQTAKFKDLLTPEER-ELVVQGMTDGWLDK-------PIKVDPEPLADQVNGMLEQRMSKAVEQMSAAGAQFLADAAKEDGATQTASGLVIKTIKEGDGPSPKATDKVEVNYHGTLPDNTVFDSSRDRGQPISFPLNGVIKGWTEGLQLMKVGGVAKLTIPPELAYGAQGTGPIPPHATLVFEVELLGI 203
[Close]
BLAST of mRNA_S-ischiensis_contig9.20637.1 vs. uniprot
Match: A0A2V7DF05_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7DF05_9BACT)

HSP 1 Score: 156 bits (395), Expect = 3.820e-43
Identity = 88/204 (43.14%), Postives = 120/204 (58.82%), Query Frame = 1 
Query:  187 TDEQYNTLYSLGTSIVQKQVSDLLDDEEELAATLDGLSDAWMRREYRLRPLPDKATPSHWVTEVDNFLRERFAREEEKRVVAGKEYMDGVAKEEGVFRTDSGLIVQHIKEGVGARPSPTDMVKVHFHGYFPDGRVFDSSVSKGSPIVFPINGVIMGWQEGLQLMRVGGKSKLVVPPELGYG-KSTLNEVPPSSTLVFELELLSI 795
            TDEQ  TLY+LG +I Q   + L   E EL+    GL+D+ + +       P K     W  ++      R A        AG+ ++D  + E+G  +T SGL++  +K G GA P PTD VKVH+HG   DG VFDSSV +G P  FP+NGVI  W EG+ +M+VGGKSKLV PP+L YG +    ++ P +TL+FE+ELL I
Sbjct:   27 TDEQ-KTLYALGLAISQNLAA-LNLSENELSFVQAGLADSVLHK-------PTKVELQAWGPKIQPLFAARAAAAAATEKKAGQAFLDKASAEQGATKTPSGLVITTLKPGTGASPKPTDTVKVHYHGTLTDGSVFDSSVQRGEPATFPLNGVIKCWGEGVGMMKVGGKSKLVCPPDLAYGDRGAPPKIKPGATLIFEVELLDI 221
[Close]
BLAST of mRNA_S-ischiensis_contig9.20637.1 vs. uniprot
Match: A0A3N5FRW2_9GAMM (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Xanthomonadales bacterium TaxID=2006849 RepID=A0A3N5FRW2_9GAMM)

HSP 1 Score: 154 bits (389), Expect = 3.180e-42
Identity = 84/209 (40.19%), Postives = 124/209 (59.33%), Query Frame = 1 
Query:  193 EQYNTLYSLGTSIVQKQVSDLLDDEEELAATLDGLSDAWMRREYRLRPLPDKATPSHWVTEVDNFLRERFAREEEKRVVAGKEYMDGVAKEEGVFRTDSGLIVQHIKEGVGARPSPTDMVKVHFHGYFPDGRVFDSSVSKGSPIVFPINGVIMGWQEGLQLMRVGGKSKLVVPPELGYG-KSTLNEVPPSSTLVFELELLSIE*TRPGG 816
            E+  TLY+LG ++ Q  ++     E EL     G +D  ++++        K  PS +  ++     +R A   E    AG+ Y+D  A E+G  +T SGL++  +K+G G  P  TD VKVH+HG  P+G+VFDSSV +  P  FP+NGVI  W EGLQ+++VGGKS+LV P E+ YG +    ++ P +TL+FE+ELL IE  +P G
Sbjct:   29 EEEKTLYALGVAVSQN-IAPFNLSEAELEMVKAGFTDGALQKQ-------PKIDPSAYFPKIRELQGQRLAAAAEVEKKAGQAYIDKAAAEKGATKTASGLVITTLKQGSGPTPQATDTVKVHYHGTLPNGKVFDSSVQRNEPATFPLNGVIKCWTEGLQMIKVGGKSRLVCPAEIAYGDRGAPPDIKPGATLIFEVELLGIE--KPAG 227
[Close]
BLAST of mRNA_S-ischiensis_contig9.20637.1 vs. uniprot
Match: A0A6B1CMQ1_9BACT (Peptidyl-prolyl cis-trans isomerase n=4 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A6B1CMQ1_9BACT)

HSP 1 Score: 154 bits (389), Expect = 3.670e-42
Identity = 82/204 (40.20%), Postives = 122/204 (59.80%), Query Frame = 1 
Query:  193 EQYNTLYSLGTSIVQKQVSDLLDD--EEELAATLDGLSDAWMRREYRLRPLPDKATPSHWVTEVDNFLRERFAREEEKRVVAGKEYMDGVAKEEGVFRTDSGLIVQHIKEGVGARPSPTDMVKVHFHGYFPDGRVFDSSVSKGSPIVFPINGVIMGWQEGLQLMRVGGKSKLVVPPELGYGKSTLNEVPPSSTLVFELELLSIE 798
            E+   LY+LG +I Q  +        + E+A  + G +DA    E    P+    +   +  +++  L+ER  + + +  V G+ + +  A+EEG  +T SGLI + +  G GA P  TD VKVH+HG   DG VFDSSV +G P+ F ++ VI GW EGLQ+M+VGGK+KL +PPEL YG    + +P ++TL+FE+ELL IE
Sbjct:   36 EEEKVLYALGLAIAQNSLEPFRGQFSDAEIAVVMQGFADAVKGGE----PI---VSLQEFGPKINPMLQERLQKVQAQAAVEGEAFREKAAQEEGAVQTTSGLIFKELTAGTGASPKATDRVKVHYHGSLIDGTVFDSSVERGEPVTFALDQVIKGWTEGLQMMKVGGKAKLTIPPELAYGPGGRSGIPANATLIFEVELLGIE 232
[Close]
BLAST of mRNA_S-ischiensis_contig9.20637.1 vs. uniprot
Match: A0A7S1TWN3_9STRA (Peptidylprolyl isomerase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWN3_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.140e-41
Identity = 74/142 (52.11%), Postives = 98/142 (69.01%), Query Frame = 1 
Query:  376 VDNFLRERFAREEEKRVVAGKEYMDGVAKEEGVFRTDSGLIVQHIKEGVGARPSPTDMVKVHFHGYFPDGRVFDSSVSKGSPIVFPINGVIMGWQEGLQLMRVGGKSKLVVPPELGYGKSTLNE-VPPSSTLVFELELLSIE 798
            ++  ++ R A + E    AG + ++  A+E+   +TDSGL+VQ IKEG GA PS TD VKVH+HG   DG VFDSSV +G PI FP+N VI GW EGLQLM+ GGK+KL VP +L YG +   + +P  STL+FE+ELL I+
Sbjct:    2 INEMVQTRMAAQAEAAKAAGLKALETAAEEDNAVKTDSGLVVQTIKEGDGASPSATDTVKVHYHGTLADGTVFDSSVERGEPIAFPLNRVIAGWTEGLQLMKEGGKAKLTVPSDLAYGDAPQGDKIPGGSTLIFEVELLEIQ 143
[Close]
BLAST of mRNA_S-ischiensis_contig9.20637.1 vs. uniprot
Match: A0A2V6YHL7_9BACT (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V6YHL7_9BACT)

HSP 1 Score: 152 bits (383), Expect = 2.290e-41
Identity = 91/204 (44.61%), Postives = 124/204 (60.78%), Query Frame = 1 
Query:  187 TDEQYNTLYSLGTSIVQKQVSDLLDDEEELAATLDGLSDAWMRREYRLRPLPDKATPSHWVTEVDNFLRERFAREEEKRVVAGKEYMDGVAKEEGVFRTDSGLIVQHIKEGVGARPSPTDMVKVHFHGYFPDGRVFDSSVSKGSPIVFPINGVIMGWQEGLQLMRVGGKSKLVVPPELGYG-KSTLNEVPPSSTLVFELELLSI 795
            TD+Q  TLY+LG  I Q      L   + L + L G+SD  ++++Y++    D  T +  ++++        A  E+K   AG+ ++D  A E+G  RT SGLI+  +K G G  P  TD VKVH+HG   DG VFDSSV +G PIV P+NGVI  W EG+QLM+VGGKSKLV P E+ YG +     + P +TLVFE+ELL I
Sbjct:   28 TDDQ-KTLYALGLVISQNLAGFNLSPSD-LESVLAGVSDGVLKKDYKV----DVQTYAPKISQLQASRAGATAAVEKK---AGQAFLDRAASEKGATRTASGLIITTLKPGTGPSPKATDKVKVHYHGTLTDGTVFDSSVQRGEPIVLPLNGVIRCWSEGVQLMKVGGKSKLVCPSEIAYGDQGRPPTIKPGATLVFEVELLEI 222
[Close]
BLAST of mRNA_S-ischiensis_contig9.20637.1 vs. uniprot
Match: A0A1Q7PDH9_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8 TaxID=1805354 RepID=A0A1Q7PDH9_9BACT)

HSP 1 Score: 150 bits (379), Expect = 9.290e-41
Identity = 86/205 (41.95%), Postives = 122/205 (59.51%), Query Frame = 1 
Query:  184 LTDEQYNTLYSLGTSIVQKQVSDLLDDEEELAATLDGLSDAWMRREYRLRPLPDKATPSHWVTEVDNFLRERFAREEEKRVVAGKEYMDGVAKEEGVFRTDSGLIVQHIKEGVGARPSPTDMVKVHFHGYFPDGRVFDSSVSKGSPIVFPINGVIMGWQEGLQLMRVGGKSKLVVPPELGYGKSTLNEV-PPSSTLVFELELLSI 795
            LT E+  TLY+LG  ++ + +S    ++ EL A L G+SD  +++E+++    D  T    +  +        A  E+K    G+ Y+D  A E+G  +T SGL++  +K G GA P  TD VKVH+HG   DG VFDSSV +G PI  P+NGVI  W EG+ +M+VGGKS+LV P ++ YG      V  P +TLVFE+ELL I
Sbjct:   26 LTSEEQKTLYALGL-VISQNLSTFNLNQTELDAVLAGVSDGVLKKEFKV----DMQTYGPKIPALQTARAGAAAAVEKKM---GQTYLDKAAAEKGATKTASGLVITTLKAGTGASPKATDRVKVHYHGTLTDGTVFDSSVQRGEPITLPLNGVIKCWTEGVSMMKVGGKSRLVCPSDIAYGDQGRPPVIKPGATLVFEVELLDI 222
[Close]
BLAST of mRNA_S-ischiensis_contig9.20637.1 vs. uniprot
Match: UPI001FAFEA8B (FKBP-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Geotalea sp. SG265 TaxID=2922867 RepID=UPI001FAFEA8B)

HSP 1 Score: 150 bits (379), Expect = 9.290e-41
Identity = 86/204 (42.16%), Postives = 123/204 (60.29%), Query Frame = 1 
Query:  187 TDEQYNTLYSLGTSIV-QKQVSDLLDDEEELAATLDGLSDAWMRREYRLRPLPDKATPSHWVTEVDNFLRERFAREEEKRVVAGKEYMDGVAKEEGVFRTDSGLIVQHIKEGVGARPSPTDMVKVHFHGYFPDGRVFDSSVSKGSPIVFPINGVIMGWQEGLQLMRVGGKSKLVVPPELGYGKSTLNEVPPSSTLVFELELLSI 795
            TDEQ  T Y++GT I  Q  V DL   E E+     GL+DA   +    +P+ D+A    +  ++      R   + EK     K+++D  AKE+G  +T SGLI   +KEG GA P  TD VKV++ G   +G+ FDSS  +G+P  FP+N VI  W +G+Q+M+ GGK+KL+ PPE+ YGKS    +PP++TLVFE+ELL +
Sbjct:   25 TDEQ-KTFYAIGTIIARQLSVFDLAPAELEMIKQ--GLTDAATGK----KPVVDEAA---YTAKIQELAAARRNAQGEKLAAEAKQFVDAAAKEKGAVKTTSGLIYIPLKEGSGANPKATDKVKVNYRGTLVNGQEFDSSYKRGTPAEFPLNQVIPCWTQGVQMMKAGGKAKLICPPEIAYGKSGSGSIPPNATLVFEIELLDV 218
[Close]
BLAST of mRNA_S-ischiensis_contig9.20637.1 vs. uniprot
Match: A0A1F6UWU4_9PROT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candidatus Muproteobacteria bacterium RBG_16_60_9 TaxID=1817755 RepID=A0A1F6UWU4_9PROT)

HSP 1 Score: 149 bits (376), Expect = 2.530e-40
Identity = 85/203 (41.87%), Postives = 118/203 (58.13%), Query Frame = 1 
Query:  193 EQYNTLYSLGTSIVQK-QVSDLLDDEEELAATLDGLSDAWMRREYRLRPLPDKATPSHWVTEVDNFLRERFAREEEKRVVAGKEYMDGVAKEEGVFRTDSGLIVQHIKEGVGARPSPTDMVKVHFHGYFPDGRVFDSSVSKGSPIVFPINGVIMGWQEGLQLMRVGGKSKLVVPPELGYGKSTLN-EVPPSSTLVFELELLSI 795
            E+  TLY++G +I Q     DL   E EL     GLSD  +++         K   + +  ++    + R A   E     GK Y+D  A ++GV RT SG++   +K+G GA P+ TD VKVH+ G   DG VFDSS+ +G P+ F +N VI  W EGLQLM+VGGKSKLV P ++ YG +    ++PP +TLVFE+ELL I
Sbjct:   29 EEQKTLYAIGIAISQSLSTFDLTQSELELVKA--GLSDGTLKK--------PKVEVNDYRVKIQELQKTRLAASAEGEKKTGKTYVDKQATQKGVTRTKSGMLFSDLKKGTGASPAATDSVKVHYKGTLTDGTVFDSSIERGEPVTFALNQVIRCWTEGLQLMKVGGKSKLVCPSDIAYGDAGRPPKIPPGATLVFEVELLEI 221
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR20_ECTSI1.930e-5044.10Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A835ZCE7_9STRA8.420e-4944.22Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A2V7DF05_9BACT3.820e-4343.14Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candid... [more]
A0A3N5FRW2_9GAMM3.180e-4240.19Peptidyl-prolyl cis-trans isomerase n=1 Tax=Xantho... [more]
A0A6B1CMQ1_9BACT3.670e-4240.20Peptidyl-prolyl cis-trans isomerase n=4 Tax=Gemmat... [more]
A0A7S1TWN3_9STRA1.140e-4152.11Peptidylprolyl isomerase n=1 Tax=Phaeomonas parva ... [more]
A0A2V6YHL7_9BACT2.290e-4144.61Peptidyl-prolyl cis-trans isomerase n=2 Tax=Candid... [more]
A0A1Q7PDH9_9BACT9.290e-4141.95Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candid... [more]
UPI001FAFEA8B9.290e-4142.16FKBP-type peptidyl-prolyl cis-trans isomerase n=1 ... [more]
A0A1F6UWU4_9PROT2.530e-4041.87Peptidyl-prolyl cis-trans isomerase n=1 Tax=Candid... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2141035..2146166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue2.2e-41
Seed eggNOG ortholog2880.D7FR20
EggNOG free text desc.FK506 binding
EggNOG OGsCOG0545@1,KOG0543@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionFKBP domain protein
Ec32 orthologEc-09_002840.1
Exons6
Model size901
Cds size768
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20637.1prot_S-ischiensis_contig9.20637.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2141135..2146133 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817391.5204856-UTR-S-ischiensis_contig9:2141034..21411341622817391.5204856-UTR-S-ischiensis_contig9:2141034..2141134Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2141035..2141134 -
1695741078.9207032-UTR-S-ischiensis_contig9:2141034..21411341695741078.9207032-UTR-S-ischiensis_contig9:2141034..2141134Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2141035..2141134 -
1622817391.5969398-UTR-S-ischiensis_contig9:2146133..21461661622817391.5969398-UTR-S-ischiensis_contig9:2146133..2146166Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2146134..2146166 -
1695741078.9974844-UTR-S-ischiensis_contig9:2146133..21461661695741078.9974844-UTR-S-ischiensis_contig9:2146133..2146166Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2146134..2146166 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817391.5316994-CDS-S-ischiensis_contig9:2141134..21412541622817391.5316994-CDS-S-ischiensis_contig9:2141134..2141254Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2141135..2141254 -
1695741078.9329064-CDS-S-ischiensis_contig9:2141134..21412541695741078.9329064-CDS-S-ischiensis_contig9:2141134..2141254Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2141135..2141254 -
1622817391.5423462-CDS-S-ischiensis_contig9:2142096..21422221622817391.5423462-CDS-S-ischiensis_contig9:2142096..2142222Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2142097..2142222 -
1695741078.9430997-CDS-S-ischiensis_contig9:2142096..21422221695741078.9430997-CDS-S-ischiensis_contig9:2142096..2142222Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2142097..2142222 -
1622817391.5531678-CDS-S-ischiensis_contig9:2143431..21434981622817391.5531678-CDS-S-ischiensis_contig9:2143431..2143498Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2143432..2143498 -
1695741078.9539447-CDS-S-ischiensis_contig9:2143431..21434981695741078.9539447-CDS-S-ischiensis_contig9:2143431..2143498Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2143432..2143498 -
1622817391.5642774-CDS-S-ischiensis_contig9:2145024..21451371622817391.5642774-CDS-S-ischiensis_contig9:2145024..2145137Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2145025..2145137 -
1695741078.9649935-CDS-S-ischiensis_contig9:2145024..21451371695741078.9649935-CDS-S-ischiensis_contig9:2145024..2145137Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2145025..2145137 -
1622817391.5754492-CDS-S-ischiensis_contig9:2145532..21457601622817391.5754492-CDS-S-ischiensis_contig9:2145532..2145760Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2145533..2145760 -
1695741078.976259-CDS-S-ischiensis_contig9:2145532..21457601695741078.976259-CDS-S-ischiensis_contig9:2145532..2145760Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2145533..2145760 -
1622817391.586247-CDS-S-ischiensis_contig9:2146019..21461331622817391.586247-CDS-S-ischiensis_contig9:2146019..2146133Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2146020..2146133 -
1695741078.9867158-CDS-S-ischiensis_contig9:2146019..21461331695741078.9867158-CDS-S-ischiensis_contig9:2146019..2146133Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2146020..2146133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20637.1

>prot_S-ischiensis_contig9.20637.1 ID=prot_S-ischiensis_contig9.20637.1|Name=mRNA_S-ischiensis_contig9.20637.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=256bp
MRRARLLTLWASVPLSSPCANAFIPGHSTAAPRGRTLQRPGGRRQLQQMA
LTDEQYNTLYSLGTSIVQKQVSDLLDDEEELAATLDGLSDAWMRREYRLR
PLPDKATPSHWVTEVDNFLRERFAREEEKRVVAGKEYMDGVAKEEGVFRT
DSGLIVQHIKEGVGARPSPTDMVKVHFHGYFPDGRVFDSSVSKGSPIVFP
INGVIMGWQEGLQLMRVGGKSKLVVPPELGYGKSTLNEVPPSSTLVFELE
LLSIE*
back to top

mRNA from alignment at S-ischiensis_contig9:2141035..2146166-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20637.1 ID=mRNA_S-ischiensis_contig9.20637.1|Name=mRNA_S-ischiensis_contig9.20637.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5132bp|location=Sequence derived from alignment at S-ischiensis_contig9:2141035..2146166- (Schizocladia ischiensis KU_0333)
CTGACCACTGCAGTGCTGTGAGGGGCTGCCACGATGCGAAGAGCTAGATT
GCTCACTCTCTGGGCTTCGGTGCCGTTGTCCTCTCCTTGCGCCAATGCCT
TCATTCCAGGGCATTCGACGGCGGCGCCACGGGGAAGGACGTTGCAGGTC
CGTGCAGCAATGCCCGTGCAGGAACGCTGGCAAGTGCAAGTTGCAAATTG
CAAGTGCAACTGCCCTCGCTTTTACCTCTCTCCTACACCTCAGGGGAGGA
TATTCGCACAAATGGCCCAACAAACCGTGCGGCCAATACTTGCCTGTCCT
TTCTCCGGGACAAAGACTTCTCTCGCGCACCGCGTCGTCACCAGCACCGC
TCGCTCCCCGCGCCCGTCGTCCCCCCCGCCCCGTCTGCGCCCGTGCCGGC
CGACAGCGCCCCGGGGGACGCCGGCAGCTGCAACAAATGGCTTTGACAGA
CGAGCAGTACAACACGCTGTACTCCTTGGGGACCAGCATCGTCCAGAAGC
AGGTGTCTGACCTCCTGGATGATGAGGAGGAGTTGGCGGCGACGCTGGAC
GGCCTCTCAGACGCCTGGATGCGGCGGGAGTACCGCCTGCGGCCGCTCCC
GGACAAGGCCACGCCCTCCCACTGGGTCACAGAGGTGATAATTATGATGG
ATGCAAACAAAAAAGACGAGCGACTCAGGCAGAAAGGGCCTCGGCAGTGA
CACCTTACTTGCCCCCAGGTGGCAGGGCGAGAAACGGGGCTCTGGGCCAG
AGGGCGAAATGAATGGTTCCCACAGAAAGTGCCTTTCGACGTAAACTGGT
AGCGCCATTCTGCGCTCGGCGCGCGATGACGGCGCCGTGCCCAGCAACCT
GGGAGTAAGGGACGCCGAAGTTGTCCGATTTTCTGCCCCACAATCGAAAG
TATCGCTTTTTTTGTTGTGAGGTGCCGCTTCTGGGGACGGGGACCGGAAC
TCCCTTGCGTACCGGCATTTTCACTCGAAAGCGATAAATGCCGACGAACC
CCCCTTTTTGTTCACCTCGGTGACCCCAGGTGGACAACTTCCTGCGGGAG
CGGTTCGCCAGGGAGGAGGAGAAGCGGGTTGTGGCGGGCAAAGAGTATAT
GGATGGCGTAGCCAAGGAGGAAGGGGTCTTCCGCACTGACAGGTGGGGCG
GTGATTCATATACATTGTAGCGAGGTACAATCGCATGTGTGTGAGATGGA
CTGTTCTCGTATTAGTACTTAGTTGTCCCATTTAAGAATTGAGTGTTCTT
ATATTAGTGGGGCGAAACCGGCGCCTGGCTGCTGCTCTAGGGCTTGCCGG
AAGAGAGTTTGGCCCTGCAGTAGTATGTGATGTTGTGTGCACGCGTTGTG
CGTGCAAGTGATGCAATATCGATCAGCAGATAGTTATCGGGCTCGACTGA
TTTTGTGGGGTGGCATTGCTAGCTACAGTACTTGGATTTGGTGTGGGTCA
AACTATCGAATATCGACTATCGATATATATATATATATAGATCAGTACTG
TCGATCTATAGTTTGATTTGCTTACATGTTCCATCGCTGCCGGAGAGATT
TTGGCCCTGCAGCACACAGTATGCGGCGTGGTGTGCACGCCTTTGCGCGC
TTGCGCACTGCCAAGCTTTGTGGCTGTGCGACTGGGCACTACAGTACTGT
AGGTCTACAGGTCGATTGTAGGCTCGTTGCAGGGGAGCACCGTGTGCTTT
TGGCATGAAGATAAGGAGCGAGTGGAAAGGAGGAGGTGTTCCTACTTACG
TGAGTTCAGGGCCCCCTGCCCCTGAAGGCCATCTTTTCCCTGAAGGCCGT
CTTTTCACTCGCCTTCACTCGCAGGGCACATAGAGCAGGAAAACAAAGAA
AAACAAAGAAAACGAAAGGGGGAAGAGGGCGGGAGGGAATGACCGTGTGT
TTGTTACGGTGCAGTGCATGGTACTGTTTGTTTGGGACAGACTCGAGTGT
TTCGGAGCAGTTGCGGCAAGGTTTACTCTAGTAGATATGCGGAGGCACCC
TGGCGCTTGACACGCATGTGTACTACCAGCTACGGCAGCGCTGCTGCCCA
CCCCACCTTGCCAGTGATGGAATATCTAAGCAAATCGACCAATTTGTCGA
CAGCACTGATCTATTTTGAGTGGTAGATAGGCGGCGAGTTCCAGGGCCCG
TGCCAAAGGGCTCATCCCAAAACAGGACTCAACGAAGCCCTTCTATATAT
CTATCGATAGTCGATATTCGATAGGTTGACCCACACCAAATCCAAGTAGT
TAGCATGCCACCCACAAAATCAGTTGAGCCCGATAGCTATCTACTGATCG
ATAGTCCACCACAGCACCTTGCTGCCTACTCACTGCTGCTGCTGCTGCTA
CTGCTGCTGCTGCTGCTGCCGCCGCCGCCGCTGCTGCTGCTGCCGCCGCT
GCCGCTGCCGCCGCTGCTGCTGCTGCTGCTGCTGCTCCTGCTGCTGCTGC
CGCCGCCGCCGCCGCCGCCGCTGCCGCCGCTGCTGCTGCTGCTGCTGTTG
CTGCCGCTGCTGCTGCCGCTGCCGCCGCTGCTGCTGCTGCTGCTGCTGCT
GCTACTGCTGCCGCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCTGCCGC
TGCTGCTGCTGCTGCTGCTGCGGCTGCGATTTCGCACGAACAACCGGCTC
TTTCCCGGCCTCCAACAGCGGGCTCATAGTTCAGCACATAAAGGAGGGTG
TGGGAGCCAGGCCAAGCCCTACAGATATGGTTAAGGTCAGTGATGGAATA
TCGATCAATAGATAGTCATTGGGCTCGACTGATTTGTGGGTGGCATTACT
AGCTACCCCTTCCCCACACAAGTTTCCCCTGGCGAGCTAAGGAAGGGCCA
TTGTTGAGGTCTCCAGTGACGTGGCCCGCACCTCGCCCCGTGTTGTTCCT
TAAAATACTTGGACTTAGTGTGTGTCAAACTATCGAATATCGGCTATCGA
TAGATATATAGATCAGTACTGTCCATAAATAGGTTGATTTGATTAGATAT
TCCATCACTGGTTAAGGTGCGCCCCAGGCAACGGACAGTTCGCATGTACA
GCAACCCGGCATGCTCCGTGCCGGCCTGATTGGGACGCGAGAGCCCATTG
CTAAATAGCTACTCCTGTTGGAGGGCAAACCCAAAGTTTAGACTTAGGGC
TGTCGGCAGTATTGCACGCACGGTTATGTCGCAAGACAAGCCAATGAGTA
CATATACGAGTATGTATGTTGCCTGCTCCGCCTCGAACGAGGCGGGTTCA
ATGGTCTCGGGACTACGGCAAGCACCACGTGAGTACATATATATATATAT
ATATATATTGCGCAGTACCCCGTTGCTTTTCACTGGCTCGTCTTGCGACG
TAACCTCGCAGCCGACAGCCCTTAACCCTTTTACCCCTGGGGTCCGTATA
TTCATAGGGTTTCAGTGTGTAAGTCCAATTTAGCAGGGTTAACAGGGGTA
TGTCGAAACTTCCCTGGGGTTTGCCCTTCACCAACAGGAGTAGGTATGCG
TACTTAAGTAGCTATTTCGTCATGGACTGTCGGCATCCCAACGGGGCCGG
GGCGGGGGAACATGCCGGGTTTGAAGTACTACGGTGCTGGCGCCCTCCCT
TCCCTTGTTCCCCCTGGCAACCATGGTACTTCGTACAAAAGTGCGATTGC
TAGTTTTGGTGCCCGGGCCGCCCTATGAAGCATGCATCGGATGACTGAAA
TTTTGACACATTAAAGAACTCGATGAGTACGTTCATTTGCGCTATAGCTT
TTCGTGTCACAACATCACATGGACCGAGCAACTGGTCAATCGATATTCGA
TAAAACTGCAAGTATTTGGGCAAAACAAATCGCACTTTTGTACCATGGTT
ACCCCCCGGCCACGGGAGGGTGCACACGACACTGCAGATGCCATACCTTC
ACGCACGCCTTCCCCCCCCCCCCCCCCCCCCCCGGCCACGGCAGGTCCAC
TTCCACGGGTACTTCCCCGACGGGAGGGTGTTTGACAGCAGCGTTTCCAA
GGGGAGCCCCATCGTCTTCCCCATCAACGGGGTCATCATGGGGTGGCAGG
AGGGCCTGCAGCTCATGCGGGTGAGTCCGCTGGCTGATGGGATATTGATC
AGTGGATAGTTGTCGGGCTCGATTGGTTTTGTGGGTGGCGCTACTACAGT
AACTGCTTGCATTTTTGTGTGGGTAAAACTATCGAATTTCAGTTACTTGT
ATCGATACGTAGATCTACCACTCAAAATAGATCAGTACTGGCGATGAATT
GGTTGATTTGCTTAGATGTTCCTTCACTGGTGGCCGGTCCCCGACAACCA
ACTATCGTGCGGCGTGTTTGTTACCCCCCCTACCCGCGGGGGCTGATTCG
GGGGGTTCAAAATGGCAGAATTTGGCAGGGAATTGCCGCACACAAAAACG
TACTTCAAGTAGCTTTGATGGGAACGGCACGAGGTGTACTTGTAGGTGTG
GACGGACAGCATCACTGGGGACCTTGACAGTGGCCCCTCCTTAGATCACC
AGGGCATGAACTTATACGGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGG
AGGAGAAGGAGGGGGACGAGGAGTAGGAGGAGGAGGAGGAGGAGGAGGGG
GAGGAGGACCTGGGGGAGGAAGCGGGGGGGAAAGTGCACTTCCCGTGACT
GCACTGGTCGCTCTATCACAGGGCAGGATGACTTGTTCTCCGGGTCAAGG
GGGGAGCTGTTCCCTTCAGTGATGGAATATCTAAGCAAATAAACCTATTT
ATCGACAGTACTGGTCTATTACGTAGTATATATCTATCGATAGTTGATAT
TCGATAGTTTGACCCACACTACATCCAAGTAGTTACTTAGTAACACCACC
CACAAAATCAGTCGAGCCCGACAACTATCTACTGATCGATAGAACATCAC
TGATGACCCCAGGTGGGCGGGAAGTCCAAGCTGGTTGTCCCGCCGGAGCT
GGGGTACGGAAAGAGCACGCTGAACGAGGTTCCCCCAAGCTCCACGCTCG
TCTTTGAGCTGGAACTTCTCTCCATTGAGTGAACGAGGCCCGGGGGCGAC
TGTGGTGCGCCTCTGGCTGTCCCGCTCATCGAAGAGTCCTTTTGCTACTT
AAAACAATTGTGTGGGTTGAGGTGTGTGCGGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:2141035..2146166-

>mRNA_S-ischiensis_contig9.20637.1 ID=mRNA_S-ischiensis_contig9.20637.1|Name=mRNA_S-ischiensis_contig9.20637.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1536bp|location=Sequence derived from alignment at S-ischiensis_contig9:2141035..2146166- (Schizocladia ischiensis KU_0333)
ATGCGAAGAGCTAGATTGCTCACTCTCTGGGCTTCGGTGCCGTTGTCCTC
TCCTTGCGCCAATGCCTTCATTCCAGGGCATTCGACGGCGGCGCCACGGG
GAAGGACGTTGCAGATGCGAAGAGCTAGATTGCTCACTCTCTGGGCTTCG
GTGCCGTTGTCCTCTCCTTGCGCCAATGCCTTCATTCCAGGGCATTCGAC
GGCGGCGCCACGGGGAAGGACGTTGCAGCGCCCCGGGGGACGCCGGCAGC
TGCAACAAATGGCTTTGACAGACGAGCAGTACAACACGCTGTACTCCTTG
GGGACCAGCATCGTCCAGAAGCAGGTGTCTGACCTCCTGGATGATGAGGA
GGAGTTGGCGGCGACGCTGGACGGCCTCTCAGACGCCTGGATGCGGCGGG
AGTACCGCCTGCGGCCGCTCCCGGACAAGGCCACGCCCTCCCACTGGGTC
ACAGAGCGCCCCGGGGGACGCCGGCAGCTGCAACAAATGGCTTTGACAGA
CGAGCAGTACAACACGCTGTACTCCTTGGGGACCAGCATCGTCCAGAAGC
AGGTGTCTGACCTCCTGGATGATGAGGAGGAGTTGGCGGCGACGCTGGAC
GGCCTCTCAGACGCCTGGATGCGGCGGGAGTACCGCCTGCGGCCGCTCCC
GGACAAGGCCACGCCCTCCCACTGGGTCACAGAGGTGGACAACTTCCTGC
GGGAGCGGTTCGCCAGGGAGGAGGAGAAGCGGGTTGTGGCGGGCAAAGAG
TATATGGATGGCGTAGCCAAGGAGGAAGGGGTCTTCCGCACTGACAGGTG
GACAACTTCCTGCGGGAGCGGTTCGCCAGGGAGGAGGAGAAGCGGGTTGT
GGCGGGCAAAGAGTATATGGATGGCGTAGCCAAGGAGGAAGGGGTCTTCC
GCACTGACAGCGGGCTCATAGTTCAGCACATAAAGGAGGGTGTGGGAGCC
AGGCCAAGCCCTACAGATATGGTTAAGCGGGCTCATAGTTCAGCACATAA
AGGAGGGTGTGGGAGCCAGGCCAAGCCCTACAGATATGGTTAAGGTCCAC
TTCCACGGGTACTTCCCCGACGGGAGGGTGTTTGACAGCAGCGTTTCCAA
GGGGAGCCCCATCGTCTTCCCCATCAACGGGGTCATCATGGGGTGGCAGG
AGGGCCTGCAGCTCATGCGGGTCCACTTCCACGGGTACTTCCCCGACGGG
AGGGTGTTTGACAGCAGCGTTTCCAAGGGGAGCCCCATCGTCTTCCCCAT
CAACGGGGTCATCATGGGGTGGCAGGAGGGCCTGCAGCTCATGCGGGTGG
GCGGGAAGTCCAAGCTGGTTGTCCCGCCGGAGCTGGGGTACGGAAAGAGC
ACGCTGAACGAGGTTCCCCCAAGCTCCACGCTCGTCTTTGAGCTGGAACT
TCTCTCCATTGAGTGAGTGGGCGGGAAGTCCAAGCTGGTTGTCCCGCCGG
AGCTGGGGTACGGAAAGAGCACGCTGAACGAGGTTCCCCCAAGCTCCACG
CTCGTCTTTGAGCTGGAACTTCTCTCCATTGAGTGA
back to top