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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 371 |
| Cds size | 213 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817391.1175332-UTR-S-ischiensis_contig9:2076276..2076383 | 1622817391.1175332-UTR-S-ischiensis_contig9:2076276..2076383 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 2076277..2076383 - |
| 1695741078.6050184-UTR-S-ischiensis_contig9:2076276..2076383 | 1695741078.6050184-UTR-S-ischiensis_contig9:2076276..2076383 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 2076277..2076383 - |
| 1622817391.168816-UTR-S-ischiensis_contig9:2077265..2077316 | 1622817391.168816-UTR-S-ischiensis_contig9:2077265..2077316 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 2077266..2077316 - |
| 1695741078.6416895-UTR-S-ischiensis_contig9:2077265..2077316 | 1695741078.6416895-UTR-S-ischiensis_contig9:2077265..2077316 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 2077266..2077316 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817391.1285737-CDS-S-ischiensis_contig9:2076383..2076437 | 1622817391.1285737-CDS-S-ischiensis_contig9:2076383..2076437 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2076384..2076437 - |
| 1695741078.6143486-CDS-S-ischiensis_contig9:2076383..2076437 | 1695741078.6143486-CDS-S-ischiensis_contig9:2076383..2076437 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2076384..2076437 - |
| 1622817391.1412783-CDS-S-ischiensis_contig9:2076892..2077013 | 1622817391.1412783-CDS-S-ischiensis_contig9:2076892..2077013 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2076893..2077013 - |
| 1695741078.6236854-CDS-S-ischiensis_contig9:2076892..2077013 | 1695741078.6236854-CDS-S-ischiensis_contig9:2076892..2077013 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2076893..2077013 - |
| 1622817391.152763-CDS-S-ischiensis_contig9:2077227..2077265 | 1622817391.152763-CDS-S-ischiensis_contig9:2077227..2077265 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2077228..2077265 - |
| 1695741078.63271-CDS-S-ischiensis_contig9:2077227..2077265 | 1695741078.63271-CDS-S-ischiensis_contig9:2077227..2077265 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 2077228..2077265 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20633.1 >prot_S-ischiensis_contig9.20633.1 ID=prot_S-ischiensis_contig9.20633.1|Name=mRNA_S-ischiensis_contig9.20633.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=71bp
MVGVGSTPCSPTRSTGGKRRRLEDEIAAAAPKPVPLRFSEDFVSGSQNLM
LLQVTPSLLQEIGEDSNLDE* back to topmRNA from alignment at S-ischiensis_contig9:2076277..2077316- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig9.20633.1 ID=mRNA_S-ischiensis_contig9.20633.1|Name=mRNA_S-ischiensis_contig9.20633.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1040bp|location=Sequence derived from alignment at S-ischiensis_contig9:2076277..2077316- (Schizocladia ischiensis KU_0333)
GCGCGCAGGCGAGGTGGAACAAGGCGCGAGACACTGCCCAACAGCACAAC
GATGGTGGGGGTAGGGTCCACGCCCTGTTCACCAACGAGGTACGCTTCTT
CTTTTCTCTGGCAGAGGCAGACAGCGAGTTTGTTTGTTTCCCGCGCAGAG
CTCTGAGCTGCACTGTGGTTCAATGGACAGACATGTACTCACCCTGCAGC
GCAGCTGTGCGTTTTGCCTACGTTGCCCCTAACGCCCCCCCGCCGTGATC
CGCCCCTTCCCCCGGCGGCGACCGCCTCCCCTCCCCGGGCCGTCGCTAAG
CAGGTCGACGGGCGGCAAGCGCCGACGTCTCGAGGACGAGATTGCTGCGG
CGGCGCCCAAGCCGGTACCCCTTCGCTTCTCCGAGGACTTCGTTTCCGGC
AGCCAGAATCTCATGCTCCTGCAGGTGAAAATGGGGTGGTTTTGCGCGTC
ACAACGGTTTGGTGTTGCCGCAGCAACATCCCCCTTGAGGGCACATGCTA
CACTGCTCCCATCCTGTGCCCCCAGTTTGTGATGTTCTATGCGTACGTAC
GTAGGCACGCACGCCCGTGAATGTTCCTCGGCGAATGCAAGCCTAGGCGA
CTGATACCGCACGGGTGTTCGTTCCTGTGCTCGTCTCCTACTGTGTACGC
AAGGAGAGAACATTGCCTGGACTGTTTGTGACACAATCCCACTGCCTGCC
TGCCTGCCTGCCTGCCTGTCTGCGTTGCCTTGCCTGCCTGCCTGTCTGCA
TTTTGCCTTCCTCGTGCCTTGCCTCGTTGCCTGCCTGCCTGCGTGCCTAA
CTGCCTGCCTGCTCCGTGCCCCCCGCCCCCGCCTCCGCCTCCGCTCGCCG
TGGCCTCCCTTCCGGCCCCCGCGCGTCAGGTGACCCCGTCCCTGCTTCAG
GAGATCGGAGAAGACTCGAATCTGGATGAGTAAGTGCAGCACAGGCGCGA
GTGCCGTCCCATGCTCCAAAGCGCCCCCGCAATGCTTCGAGGTACCTACT
TGCCGACTGTACTTTAGCCTGCCTATGCCGTCCCGGGGGC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig9:2076277..2077316- >mRNA_S-ischiensis_contig9.20633.1 ID=mRNA_S-ischiensis_contig9.20633.1|Name=mRNA_S-ischiensis_contig9.20633.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=426bp|location=Sequence derived from alignment at S-ischiensis_contig9:2076277..2077316- (Schizocladia ischiensis KU_0333)
ATGGTGGGGGTAGGGTCCACGCCCTGTTCACCAACGAGATGGTGGGGGTA
GGGTCCACGCCCTGTTCACCAACGAGGTCGACGGGCGGCAAGCGCCGACG
TCTCGAGGACGAGATTGCTGCGGCGGCGCCCAAGCCGGTACCCCTTCGCT
TCTCCGAGGACTTCGTTTCCGGCAGCCAGAATCTCATGCTCCTGCAGGTC
GACGGGCGGCAAGCGCCGACGTCTCGAGGACGAGATTGCTGCGGCGGCGC
CCAAGCCGGTACCCCTTCGCTTCTCCGAGGACTTCGTTTCCGGCAGCCAG
AATCTCATGCTCCTGCAGGTGACCCCGTCCCTGCTTCAGGAGATCGGAGA
AGACTCGAATCTGGATGAGTAAGTGACCCCGTCCCTGCTTCAGGAGATCG
GAGAAGACTCGAATCTGGATGAGTAA back to top
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