mRNA_S-ischiensis_contig9.20631.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20631.1
Unique NamemRNA_S-ischiensis_contig9.20631.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20631.1 vs. uniprot
Match: D7G244_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G244_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 7.220e-45
Identity = 94/175 (53.71%), Postives = 117/175 (66.86%), Query Frame = 1 
Query:   94 WPGQRQGATRLGFTTGTGETGEMLQG-LSEDQVRRIGARTRDMWRQHVTLETRFPEASLPPEG--LAGVDPDAVRRKRLVYRSKQRGWLEVDLLMGAWADEHVKKLTPHELDEYEDVINCETVDIFHLVTGPAPPPPPFDGNGVLLRLREYALSRPLGTASPEGYALAKRVRNLT 609
            W G+RQ           G  G+ LQ  L+ ++V R+GART++MW+ HV L T FP+ASLPP G   + V PDAVRRKRLVYRSKQRGWLEVDLL+G WA+ +V  L+  ++D YED++N ETVDIF+ +TG A PP   D   +L RL+ Y  S PLG  SP  YA AKR  NLT
Sbjct:   47 WEGERQ----------PGSGGDELQRELTPEEVLRVGARTQEMWKDHVALTTEFPDASLPPGGHEASSVSPDAVRRKRLVYRSKQRGWLEVDLLLGTWAERNVAGLSAADMDSYEDILNLETVDIFNFITGNADPPAFVDAP-MLARLQAYVKSNPLGQ-SPASYASAKRESNLT 209
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BLAST of mRNA_S-ischiensis_contig9.20631.1 vs. uniprot
Match: A0A835YN51_9STRA (Flavinator of succinate dehydrogenase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN51_9STRA)

HSP 1 Score: 162 bits (409), Expect = 5.500e-42
Identity = 82/150 (54.67%), Postives = 109/150 (72.67%), Query Frame = 1 
Query:  160 MLQGLSEDQVRRIGARTRDMWRQHVTLETRFPEASLPPEGLAGVDPDAVRRKRLVYRSKQRGWLEVDLLMGAWADEHVKKLTPHELDEYEDVINCETVDIFHLVTGPAPPPPPFDGNGVLLRLREYALSRPLGTASPEGYALAKRVRNLT 609
            M + L+E+QVRR+G R+++ +  H+ L+T+FPEAS PPEG  GV  D VRRKRL+YRSKQRGWLEVDLL+G WA+ +V  LT  E+DEYE ++NCETVDIF+ V+G    P   +   ++ RLREYALS P+G+ +P  YA  K+   LT
Sbjct:   54 MYENLTEEQVRRVGERSQEEFFNHIVLKTKFPEASFPPEG--GVSRDMVRRKRLIYRSKQRGWLEVDLLLGTWAEANVMGLTAAEMDEYEAILNCETVDIFNYVSGVQAVPARLE-TPMMARLREYALSAPIGS-TPSEYAAVKQKNRLT 199
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BLAST of mRNA_S-ischiensis_contig9.20631.1 vs. uniprot
Match: A0A4D9CR24_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CR24_9STRA)

HSP 1 Score: 151 bits (382), Expect = 2.300e-38
Identity = 78/141 (55.32%), Postives = 97/141 (68.79%), Query Frame = 1 
Query:  172 LSEDQVRRIGARTRDMWRQHVTLETRFPEASLPPEGLAG-VDPDAVRRKRLVYRSKQRGWLEVDLLMGAWADEHVKKLTPHELDEYEDVINCETVDIFHLVTGPAPPPPPFDGNGVLLRLREYALSRPLGTASPEGYALAK 591
            L+  QVRRIG RT+     H+ L+T+ PE+SL P    G VD D +RRKRL+YRSKQRGWLEVDLL+G+WA E+V  L+  ELDEYE ++N ET+DIF+LV G   PPP   G+ +L RL+EYA S P G AS   Y   K
Sbjct:   49 LTPAQVRRIGERTKAQLDDHLRLKTQVPESSLDPTAPPGPVDTDLIRRKRLLYRSKQRGWLEVDLLLGSWAAENVMSLSVPELDEYEKILNMETIDIFNLVNGALAPPPALKGSKILSRLQEYANSSPFGNASTRTYEAVK 189
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BLAST of mRNA_S-ischiensis_contig9.20631.1 vs. uniprot
Match: A0A7S2D3N9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D3N9_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.520e-34
Identity = 70/147 (47.62%), Postives = 96/147 (65.31%), Query Frame = 1 
Query:  169 GLSEDQVRRIGARTRDMWRQHVTLETRFPEASLPPEGLAGVDPDAVRRKRLVYRSKQRGWLEVDLLMGAWADEHVKKLTPHELDEYEDVINCETVDIFHLVTGPAPPPPPFDGNGVLLRLREYALSRPLGTASPEGYALAKRVRNLT 609
            GL      R  AR + +  +H +L+T   + S    G   +DPD +RRKR++YRSKQRGWLEVDLL+G WA +HV  LT  ELD+YE ++N ET+DIF+ +TG   PPP  D N ++++L+++ +S PLG ASP  Y  AK   NLT
Sbjct:   45 GLEASLSERAKARDKSLRLEHESLKT---DVSASNYGTRSIDPDGIRRKRIIYRSKQRGWLEVDLLLGTWAVKHVPDLTVEELDQYETILNRETMDIFNYITGKEAPPPEID-NAIMVQLKKWTISSPLGVASPVDYEAAKENSNLT 187
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BLAST of mRNA_S-ischiensis_contig9.20631.1 vs. uniprot
Match: A0A7S2R8F6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R8F6_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.020e-34
Identity = 75/147 (51.02%), Postives = 97/147 (65.99%), Query Frame = 1 
Query:  169 GLSEDQVRRIGARTRDMWRQHVTLETRFPEASLPPEGLAGVDPDAVRRKRLVYRSKQRGWLEVDLLMGAWADEHVKKLTPHELDEYEDVINCETVDIFHLVTGPAPPPPPFDGNGVLLRLREYALSRPLGTASPEGYALAKRVRNLT 609
            GL +   RR  AR   M  +H  L+T  P +SL P G   VD D +RRKRL+YRSKQRGWLEVDLLMG WA EHV  L+  ELD+YE ++N ET+DIF++VTG   PPP  + + +L +++ +A + P+GT SPE YA  K    LT
Sbjct:   12 GLEQSLARRAAARDHQMRSEHFALKTDVPVSSLAP-GETRVDGDTIRRKRLIYRSKQRGWLEVDLLMGTWAVEHVPSLSSEELDQYEALLNRETIDIFNIVTGKDVPPPEVE-SPLLKKIQAWANTSPIGT-SPESYASVKGSAGLT 155
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BLAST of mRNA_S-ischiensis_contig9.20631.1 vs. uniprot
Match: A0A484E5Z1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E5Z1_BRELC)

HSP 1 Score: 127 bits (320), Expect = 3.430e-30
Identity = 65/144 (45.14%), Postives = 96/144 (66.67%), Query Frame = 1 
Query:  163 LQGLSEDQVRRIGARTRDMWRQHVTLETRFPEASLPPEGLAGVDPDAVRRKRLVYRSKQRGWLEVDLLMGAWADEHVKKLTPHELDEYEDVINCETVDIFHLVTGPAPPPPPFDGNGVLLRLREYALSRPLGTASPEGYALAKR 594
            L+ +SEDQ ++   R+  +   H+ +++ FP +S   +G   V  D   RKR++YRSKQRGWLEVDLL+G WA E+V KLT  EL +YE+++N ET+DIF+ ++G  P P   D   ++ RL+EY L+ PLG AS +G+A  K+
Sbjct:   37 LKSISEDQAKQALERSAAIRADHLAIKSEFPTSS---QGDHVVSTDEANRKRIIYRSKQRGWLEVDLLLGRWASENVMKLTSDELQQYEEILNEETIDIFNYISGKNPVPSKLD-TSMMKRLQEYCLTSPLGKASIDGFAENKK 176
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BLAST of mRNA_S-ischiensis_contig9.20631.1 vs. uniprot
Match: D0NCU8_PHYIT (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=D0NCU8_PHYIT)

HSP 1 Score: 125 bits (314), Expect = 1.750e-29
Identity = 64/144 (44.44%), Postives = 96/144 (66.67%), Query Frame = 1 
Query:  163 LQGLSEDQVRRIGARTRDMWRQHVTLETRFPEASLPPEGLAGVDPDAVRRKRLVYRSKQRGWLEVDLLMGAWADEHVKKLTPHELDEYEDVINCETVDIFHLVTGPAPPPPPFDGNGVLLRLREYALSRPLGTASPEGYALAKR 594
            L+ +S+DQ +R   R+  +   H++ +  FP +S   +G   VD D   RKR++YRSKQRGWLEVDLL+G WA ++V +L+  EL +YED++N ET+DIF+ ++G +  P   D   ++ RL+EY L+ PLG AS EG+A  K+
Sbjct:   29 LKNISQDQAKRALERSAAIRADHISAKGNFPASS---QGDHDVDSDEANRKRIIYRSKQRGWLEVDLLLGRWASQNVMQLSSDELKQYEDILNEETIDIFNYISGKSAVPHRLD-TPMMKRLQEYCLTSPLGKASTEGFAENKK 168
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BLAST of mRNA_S-ischiensis_contig9.20631.1 vs. uniprot
Match: A0A8K1CUB1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUB1_PYTOL)

HSP 1 Score: 125 bits (313), Expect = 4.340e-29
Identity = 73/193 (37.82%), Postives = 110/193 (56.99%), Query Frame = 1 
Query:   31 MASAGPLRGCLRRQVCTRLAVWPGQRQGATRLGFTTGTGE-----TGEMLQGLSEDQVRRIGARTRDMWRQHVTLETRFPEASLPPEGLAGVDPDAVRRKRLVYRSKQRGWLEVDLLMGAWADEHVKKLTPHELDEYEDVINCETVDIFHLVTGPAPPPPPFDGNGVLLRLREYALSRPLGTASPEGYALAKR 594
            M     LR  +R     +  + PG R   T   F+T + +     T   L G+SEDQ ++   R+ ++  +HV  +  +P  S   +G   +  D   RKR++YRSKQRGWLEVDLL+G+WA ++V  LT  EL +YED++N ET+DIF+ ++G    P   +   ++ R++EY  S PLG AS EG+A  K+
Sbjct:    4 MKMTSVLRVAVRANGVAQRTMTPGLR---TMRSFSTASEDDKSVFTQGFLNGVSEDQAKKALERSDEIRAKHVAAKDSYPSQS---QGETEISADEANRKRIIYRSKQRGWLEVDLLLGSWAAQNVMGLTAEELKQYEDILNQETIDIFNYISGKDVIPEEIN-TPIMKRIQEYCFSSPLGQASVEGFAANKK 189
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BLAST of mRNA_S-ischiensis_contig9.20631.1 vs. uniprot
Match: A0A1V9ZJH1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJH1_9STRA)

HSP 1 Score: 124 bits (310), Expect = 6.380e-29
Identity = 62/141 (43.97%), Postives = 89/141 (63.12%), Query Frame = 1 
Query:  172 LSEDQVRRIGARTRDMWRQHVTLETRFPEASLPPEGLAGVDPDAVRRKRLVYRSKQRGWLEVDLLMGAWADEHVKKLTPHELDEYEDVINCETVDIFHLVTGPAPPPPPFDGNGVLLRLREYALSRPLGTASPEGYALAKR 594
            ++E Q  R   R   M ++H  ++  FP+AS   +G   +D D   RKR++YRSKQRGWLEVDLL+G WA E+V  LT  EL +YED++N ET+DIF+ ++G    PP  D   ++ RL+ Y  + PLG AS +G+   K+
Sbjct:   34 ITEAQEMRAQERNAQMRKEHFAMKAEFPDAS---QGDVSIDADMANRKRVIYRSKQRGWLEVDLLLGRWASENVMSLTKEELSQYEDILNRETIDIFNFISGKDTVPPEID-TPMMKRLQAYCKTSPLGKASIQGFLENKK 170
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BLAST of mRNA_S-ischiensis_contig9.20631.1 vs. uniprot
Match: K3X3N5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3N5_GLOUD)

HSP 1 Score: 123 bits (309), Expect = 1.030e-28
Identity = 73/191 (38.22%), Postives = 106/191 (55.50%), Query Frame = 1 
Query:   22 TK*MASAGPLRGCLRRQVCTRLAVWPGQRQGATRLGFTTGTGETGEMLQGLSEDQVRRIGARTRDMWRQHVTLETRFPEASLPPEGLAGVDPDAVRRKRLVYRSKQRGWLEVDLLMGAWADEHVKKLTPHELDEYEDVINCETVDIFHLVTGPAPPPPPFDGNGVLLRLREYALSRPLGTASPEGYALAKR 594
            TK M +A   R C R    TR             L  T+   +    L G++E+Q ++   R + +  QH   +  FP  S   +G   +D D   RKR++YRSKQRGWLEVDLL+G+WA ++V  LT  EL +YED++N ET+DIF+ ++G    P   D   ++ R++EY  S PLG AS +G+A  K+
Sbjct:    4 TKLMTTAA--RRCCRSATATRF------------LSTTSHPIDNNAFLTGVTEEQAKKALERGQQIRDQHHAAKDTFPSVS---QGDREIDADEANRKRVIYRSKQRGWLEVDLLLGSWASKNVMSLTAEELQQYEDILNKETIDIFNYISGKDVIPTDID-TPIMKRIQEYCFSSPLGKASIDGFAKNKK 176
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G244_ECTSI7.220e-4553.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YN51_9STRA5.500e-4254.67Flavinator of succinate dehydrogenase-domain-conta... [more]
A0A4D9CR24_9STRA2.300e-3855.32Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2D3N9_9STRA1.520e-3447.62Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2R8F6_9STRA2.020e-3451.02Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A484E5Z1_BRELC3.430e-3045.14Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
D0NCU8_PHYIT1.750e-2944.44Uncharacterized protein n=10 Tax=Phytophthora TaxI... [more]
A0A8K1CUB1_PYTOL4.340e-2937.82Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9ZJH1_9STRA6.380e-2943.97Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
K3X3N5_GLOUD1.030e-2838.22Uncharacterized protein n=1 Tax=Globisporangium ul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2060828..2064487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.7
Seed ortholog evalue8.3e-41
Seed eggNOG ortholog2880.D7G244
Preferred nameSDHAF2
KEGG koko:K18168,ko:K20352
KEGG TC9.B.188
GOsGO:0000003,GO:0003006,GO:0003674,GO:0005488,GO:0005507,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0007049,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010646,GO:0010648,GO:0010717,GO:0010719,GO:0015980,GO:0016043,GO:0016310,GO:0016311,GO:0016999,GO:0017144,GO:0018065,GO:0018293,GO:0019219,GO:0019222,GO:0019538,GO:0019637,GO:0019693,GO:0019752,GO:0019953,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0022900,GO:0022904,GO:0023051,GO:0023057,GO:0030111,GO:0030154,GO:0030178,GO:0030435,GO:0030437,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0033108,GO:0034293,GO:0034552,GO:0034553,GO:0034622,GO:0034641,GO:0036211,GO:0042592,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043436,GO:0043933,GO:0043934,GO:0043935,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045333,GO:0045595,GO:0045596,GO:0045893,GO:0045935,GO:0045944,GO:0046034,GO:0046483,GO:0046872,GO:0046914,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0051093,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051321,GO:0051704,GO:0055065,GO:0055070,GO:0055076,GO:0055080,GO:0055086,GO:0055114,GO:0060255,GO:0060828,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0072350,GO:0072521,GO:0080090,GO:0090090,GO:0098771,GO:1901135,GO:1901360,GO:1901564,GO:1902680,GO:1903046,GO:1903506,GO:1903508,GO:2000026,GO:2000112,GO:2001141
EggNOG free text desc.protein-FAD linkage
EggNOG OGsCOG2938@1,KOG3326@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko03029,ko04131
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionFlavinator of succinate dehydrogenase
Ec32 orthologEc-09_003830.1
Exons3
Model size2511
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20631.1prot_S-ischiensis_contig9.20631.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2060858..2062588 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817390.8982298-UTR-S-ischiensis_contig9:2060827..20608571622817390.8982298-UTR-S-ischiensis_contig9:2060827..2060857Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2060828..2060857 +
1695741078.4476035-UTR-S-ischiensis_contig9:2060827..20608571695741078.4476035-UTR-S-ischiensis_contig9:2060827..2060857Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2060828..2060857 +
1622817390.9430313-UTR-S-ischiensis_contig9:2062588..20644871622817390.9430313-UTR-S-ischiensis_contig9:2062588..2064487Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2062589..2064487 +
1695741078.4935894-UTR-S-ischiensis_contig9:2062588..20644871695741078.4935894-UTR-S-ischiensis_contig9:2062588..2064487Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2062589..2064487 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817390.9095101-CDS-S-ischiensis_contig9:2060857..20610131622817390.9095101-CDS-S-ischiensis_contig9:2060857..2061013Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2060858..2061013 +
1695741078.4608142-CDS-S-ischiensis_contig9:2060857..20610131695741078.4608142-CDS-S-ischiensis_contig9:2060857..2061013Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2060858..2061013 +
1622817390.9201565-CDS-S-ischiensis_contig9:2061428..20615961622817390.9201565-CDS-S-ischiensis_contig9:2061428..2061596Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2061429..2061596 +
1695741078.4723723-CDS-S-ischiensis_contig9:2061428..20615961695741078.4723723-CDS-S-ischiensis_contig9:2061428..2061596Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2061429..2061596 +
1622817390.9326265-CDS-S-ischiensis_contig9:2062330..20625881622817390.9326265-CDS-S-ischiensis_contig9:2062330..2062588Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2062331..2062588 +
1695741078.4832125-CDS-S-ischiensis_contig9:2062330..20625881695741078.4832125-CDS-S-ischiensis_contig9:2062330..2062588Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2062331..2062588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20631.1

>prot_S-ischiensis_contig9.20631.1 ID=prot_S-ischiensis_contig9.20631.1|Name=mRNA_S-ischiensis_contig9.20631.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=194bp
MASAGPLRGCLRRQVCTRLAVWPGQRQGATRLGFTTGTGETGEMLQGLSE
DQVRRIGARTRDMWRQHVTLETRFPEASLPPEGLAGVDPDAVRRKRLVYR
SKQRGWLEVDLLMGAWADEHVKKLTPHELDEYEDVINCETVDIFHLVTGP
APPPPPFDGNGVLLRLREYALSRPLGTASPEGYALAKRVRNLT*
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mRNA from alignment at S-ischiensis_contig9:2060828..2064487+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20631.1 ID=mRNA_S-ischiensis_contig9.20631.1|Name=mRNA_S-ischiensis_contig9.20631.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3660bp|location=Sequence derived from alignment at S-ischiensis_contig9:2060828..2064487+ (Schizocladia ischiensis KU_0333)
CACGACTGCGAGCTCCGAGGTACAAAATAAATGGCGTCCGCCGGCCCCCT
CCGTGGCTGCCTGCGACGACAAGTATGTACTCGATTGGCGGTGTGGCCGG
GCCAGCGGCAAGGGGCCACGCGGCTAGGCTTCACTACTGGCACGGGCGAG
ACCGGCGAGATGCTTCAGGGGCTGAGCGAGGACCAGGTCTGTGGCTTTCA
GCTGGGGCTCGCGTCCTGATCCGGCCGCGTTGGTGTTTCTCCCCCCTCTG
GGTCCAGGACGCAGGCTTTGACAGCTTTGACAGACAGCAGCTGTTGCCTT
GGAACTTTAGCCTAAGCATCGTCTTGATCATCGATCGCAGAGCAAGCAGC
CACGCAGCGTTTGCGGCAAGCGCTGCGGCAGCAGCAGCAGGAGCAGCAGC
AGCAACAGCCTCAGCAGCATCATATCCATCTGAAGCACCAGCAGCAGCAC
CGGCAGCAGCACCACGATCGCCGTGGCCGCCACCCGCAGCAGCAGGAGGA
TCGGCACCAGCACCAGCAGCTGAGCAAATGAGCATCATCCCCCCCTGACC
GGTTTCTTCCACCCCTTACCCCCGGCGTGTTCCCGTCGGTCTCCTCACCA
GGTCCGTCGCATAGGCGCGCGGACAAGGGACATGTGGAGGCAGCATGTTA
CGCTCGAGACTCGCTTCCCGGAGGCAAGCCTCCCGCCGGAGGGCCTTGCC
GGGGTGGACCCTGACGCCGTCCGCCGGAAACGCCTCGTGTACCGGAGCAA
GCAGAGGGGTTGGCTTGAGGTGCGTGCGCGGCGGTCACCGTTGCGCTCAC
TCTCCTGCTCTCGTTATTTATCTCGCTATTCGCGAACACAGTAGGGCGAG
GACGGCCGCTCTCTCCCTGGAGGGGAAATAACATGTCGACCGGTTGTGAG
GGTTTTCCGATGAGTAGTAGTAGGTATCCGCACACCACTTACTAGTAGCA
GTATGCGTGTTGCACTTCGAACTATCGGCTAAATTTTACCCGTTCGTGAA
CGGCACAACCTTTGGTATTGGATGGGTGGGTGATGAGCGGGCGGGTGATG
GGTGGGTGGGTGGGTGGGTGTGGTGCGCCAACCAATGAAGCGTCGGGGGG
CTCAACTGTAGCGGAGTGGCCTTGTGGGAAGGAGCAAGCACATGGAGGGG
CTGATCCTGCTGCCCCCCTTTGGGGGGGGGGGCGGGGAGAGCACGCACTC
CGTTCGTAGCCCTTTCGAGGACTGCCCAGGGCAAAGTGCTTTCCGAGCGA
AACCAGAAACCAGAAGAGAGGCGTCTGCAAAGTTGAGCGCGGCGTGCCGC
CGCCGTCCTCCAGAGGTGAACGACCCTTAACTCTGTGGAGGACTCTTCAT
TAACCCTTAGCGGCCAAACACTGACGGCATCGACGATGGTGCGCCCGGAC
AGCTCCTCTGTGCTCGTCCTGTACAGTAGTGCTCTCTCACTCAACTCTTG
TTGCGCCGCGATTGTTTTGTGACTCCTCTGCCAACACCCCCCCCCCCCGG
GAGGTGGACCTGCTCATGGGCGCGTGGGCCGACGAGCACGTCAAAAAGCT
GACGCCCCACGAGCTGGACGAGTACGAGGACGTCATCAACTGCGAAACAG
TCGACATTTTCCACCTGGTGACGGGGCCGGCCCCGCCCCCGCCCCCCTTT
GACGGCAACGGGGTGCTCCTGCGGCTTAGGGAGTACGCGCTCTCCCGGCC
CTTGGGGACGGCCTCCCCGGAGGGGTACGCGCTCGCCAAGCGGGTCAGGA
ACCTCACGTGATTTTTTTTATAGTTTGGATGGAGTGCGAGTTCCGGCCCC
CGTCCCAGCAACCTACTGCAAGGTGGGATTTTTTAATTTGTTTGATGAAT
GCGAGTTCCGGGCCCCGTCCCAACAACCTAAGGTGGGGACCTCACCAGAA
GCAAGGTGGGATTTGTTCTGCCCTTGAGGGGCCTTGCCTCTCGCCGTTGC
TGATTGGTCCAAAACCCTGGGCAGCCTTGCTTCAAGCTGTTGGGCGATTG
GTCTTTGGTCGGTAACCTGGCGTGATTGCTTCGGCGAGGGTATCAAGAGA
TCTTGTCTCGCCGTTGCTTGCTGATTGGGCCAGGAACCGCCTTCAGGACT
GGGAATAGTGGTCAGGAACCCCGCGTGATTTCGGCCCGCGAGGGCCCTGG
CCTCGCCGTCGCTGTGTGACACATCTGCTTGCCCTCCGAGGGAAGGAAGG
GCTTCCGTTGAGTTCTTTTTGAATCATTGTGATGGTATCCTGTTTTGGGA
CGAGCCTTTCGGCACGGGGCCTGGAACTCGCCGCTTGTCTGCCATTCACA
TAAATTGTACTTCTAGCAAGGTACAATCGCACGTTCACTATTTGGTCCGG
ACACCGCCCATGTTGGTCGGGCACCTTGCTTCCAGGTCGCCCGACCGGTC
ATCCGGTCCTCACCCCGGCTGGTCAGGGGACCTCACCGCAGAGCAGATGT
TCCTTCTTTGCCCCCGTTTCGTTCACAAATTGTAGTAGCGGCCATCCTGC
TGCTGCTCCGAGGCGTTGCCGCATGCCGTGCGCCCCTACGGTGCGTCGCG
TTCAGCTGTAGCTAGCGCTCTTTATGTGGCGGGTGTAGGTAAGTAGGTAT
TCTTATGGTAGCCGGGGCGCCGAGCGGGTCGGGCCCAATGGTATGTGTCA
TATAGATTGCAACGATGTACAATCGCACGTGTGTGAGATTGAGTGTTTCT
CGCGCTTCGAAGTACTAGTGGTTGTCACACCATGATTTTGAGGGTCCAAT
GGTCGGTCATATGCCGTTGGTCCCCGGGTCCGCGAGCCAAACCTCACAGT
GAGGCACTGTGACCAGGCGTTTTGGAATGTTGTTGCTGTTGTTCGGGGCA
CATAAATGGTATACCTACAGTACATACTTGCTGCAGTTGCGTAGCCTCAG
GCTGGCTGCTGCGCTCAGGGTGAGGCGTTCTAGGCGAGCCGGGGGGTGGG
AACCTTACGTGAGTGGTGGCCACCGGTCAGCAGGGTCTCGGGAACCACTT
CGAACCGCAGCACGAAACTTGAAGTGTCCACGACGGTAACACCAGACGAC
GTGCAAATTTTCACGCTGCTATTCGTATTTGTTCCCAAGCTAGAGCTGGA
AAGCTGAAGCGGTGGCCTGTAAGGAACGGGGCGATTTGCCCCCGCCACCC
GCGGAGAACGCTTCGCTGCTATCCTACAAATGTACGCGGTACTTACCGTA
ATCGTTGGGGAGATCTTGCCCCCCCACGCCAATTTCCGGGAGAAATTTTC
TCGCCGAATACTGGTCGGATTCGCGCGGAAAAACTCGGAAAAATCTCCCT
CAGGACCTGGGGAAACTTTTTCGAGGGCTTTCGGGACAATCCAGGACCTT
CCCGGCGAGAAGCATTCCCCCGGAAATTGTCCCGTGGGGGCAAAATCTCT
GCGACCATTGCGGTAGTGCCATTTGGGTTGGCCGGGGGGCACTCAGGCTC
TGGGAGACTGCTCGTACTTGAAAAAGGGCACGCCATGTGCAAGTACATGG
CGGTGATTCATATAAATTGTACTCGGAGTAACGAGGTACAATCGCACGTG
TGTGCGATTGACTGTTCTCATATTACTAGTTGATTGATTCAAGAATTCAA
TGTTATTATATTAGTGATTATCACATCAGGGAACTAAGTACATGGCATGC
ACGTCGTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2060828..2064487+

>mRNA_S-ischiensis_contig9.20631.1 ID=mRNA_S-ischiensis_contig9.20631.1|Name=mRNA_S-ischiensis_contig9.20631.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1164bp|location=Sequence derived from alignment at S-ischiensis_contig9:2060828..2064487+ (Schizocladia ischiensis KU_0333)
ATGGCGTCCGCCGGCCCCCTCCGTGGCTGCCTGCGACGACAAGTATGTAC
TCGATTGGCGGTGTGGCCGGGCCAGCGGCAAGGGGCCACGCGGCTAGGCT
TCACTACTGGCACGGGCGAGACCGGCGAGATGCTTCAGGGGCTGAGCGAG
GACCAGATGGCGTCCGCCGGCCCCCTCCGTGGCTGCCTGCGACGACAAGT
ATGTACTCGATTGGCGGTGTGGCCGGGCCAGCGGCAAGGGGCCACGCGGC
TAGGCTTCACTACTGGCACGGGCGAGACCGGCGAGATGCTTCAGGGGCTG
AGCGAGGACCAGGTCCGTCGCATAGGCGCGCGGACAAGGGACATGTGGAG
GCAGCATGTTACGCTCGAGACTCGCTTCCCGGAGGCAAGCCTCCCGCCGG
AGGGCCTTGCCGGGGTGGACCCTGACGCCGTCCGCCGGAAACGCCTCGTG
TACCGGAGCAAGCAGAGGGGTTGGCTTGAGGTCCGTCGCATAGGCGCGCG
GACAAGGGACATGTGGAGGCAGCATGTTACGCTCGAGACTCGCTTCCCGG
AGGCAAGCCTCCCGCCGGAGGGCCTTGCCGGGGTGGACCCTGACGCCGTC
CGCCGGAAACGCCTCGTGTACCGGAGCAAGCAGAGGGGTTGGCTTGAGGT
GGACCTGCTCATGGGCGCGTGGGCCGACGAGCACGTCAAAAAGCTGACGC
CCCACGAGCTGGACGAGTACGAGGACGTCATCAACTGCGAAACAGTCGAC
ATTTTCCACCTGGTGACGGGGCCGGCCCCGCCCCCGCCCCCCTTTGACGG
CAACGGGGTGCTCCTGCGGCTTAGGGAGTACGCGCTCTCCCGGCCCTTGG
GGACGGCCTCCCCGGAGGGGTACGCGCTCGCCAAGCGGGTCAGGAACCTC
ACGTGAGTGGACCTGCTCATGGGCGCGTGGGCCGACGAGCACGTCAAAAA
GCTGACGCCCCACGAGCTGGACGAGTACGAGGACGTCATCAACTGCGAAA
CAGTCGACATTTTCCACCTGGTGACGGGGCCGGCCCCGCCCCCGCCCCCC
TTTGACGGCAACGGGGTGCTCCTGCGGCTTAGGGAGTACGCGCTCTCCCG
GCCCTTGGGGACGGCCTCCCCGGAGGGGTACGCGCTCGCCAAGCGGGTCA
GGAACCTCACGTGA
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