mRNA_S-ischiensis_contig9.20628.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20628.1
Unique NamemRNA_S-ischiensis_contig9.20628.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:2038315..2039090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size713
Cds size498
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20628.1prot_S-ischiensis_contig9.20628.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 2038530..2039090 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.1373756-UTR-S-ischiensis_contig9:2038314..20385291622817367.1373756-UTR-S-ischiensis_contig9:2038314..2038529Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2038315..2038529 -
1695741060.723952-UTR-S-ischiensis_contig9:2038314..20385291695741060.723952-UTR-S-ischiensis_contig9:2038314..2038529Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 2038315..2038529 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817367.1487396-CDS-S-ischiensis_contig9:2038529..20387071622817367.1487396-CDS-S-ischiensis_contig9:2038529..2038707Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2038530..2038707 -
1695741060.7342646-CDS-S-ischiensis_contig9:2038529..20387071695741060.7342646-CDS-S-ischiensis_contig9:2038529..2038707Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2038530..2038707 -
1622817367.1601737-CDS-S-ischiensis_contig9:2038770..20390901622817367.1601737-CDS-S-ischiensis_contig9:2038770..2039090Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2038771..2039090 -
1695741060.7467492-CDS-S-ischiensis_contig9:2038770..20390901695741060.7467492-CDS-S-ischiensis_contig9:2038770..2039090Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 2038771..2039090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20628.1

>prot_S-ischiensis_contig9.20628.1 ID=prot_S-ischiensis_contig9.20628.1|Name=mRNA_S-ischiensis_contig9.20628.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=166bp
RDSCTSKVGTSCCLLAVVETGPPLGYELFNYSDRTDRGGQSYAGHVIHDG
CRDIVNRQKAVTEGKSYFEVHLFRGRGVPICQTCSGQLLKILLVQPEPEQ
VTARLVKTCPARNMFPRKLARGGKISQTISVGGDIIYRRGMGQPSGITHQ
PCPAGGSGQVHHSRW*
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mRNA from alignment at S-ischiensis_contig9:2038315..2039090-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20628.1 ID=mRNA_S-ischiensis_contig9.20628.1|Name=mRNA_S-ischiensis_contig9.20628.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=776bp|location=Sequence derived from alignment at S-ischiensis_contig9:2038315..2039090- (Schizocladia ischiensis KU_0333)
CGGGACAGTTGTACTTCCAAAGTAGGTACTTCGTGCTGCTTACTAGCCGT
AGTAGAGACAGGGCCGCCTCTAGGGTATGAACTGTTCAACTATTCAGATC
GGACGGACCGCGGCGGGCAATCGTATGCTGGGCATGTCATCCATGATGGC
TGCAGGGACATCGTGAACCGCCAGAAGGCCGTCACGGAGGGTAAATCGTA
CTTCGAAGTACACCTCTTCCGGGGAAGAGGAGTACCTATATGCCAGACGT
GTAGTGGCCAATTGTTGAAAATCCTTCTGGTTCAGCCTGAGCCTGAGCAG
GTGACCGCTCGTCTGGTGAAGTCTGAGTCACGGGCTTCCCCAGAGTTGGA
GGGAACTTTTCCGGGGCTTTCGGGACAATCCAGGACCTGTCCGGCTAGAA
ATATGTTCCCCCGAAAATTGGCCCGTGGGGGCAAAATCTCTCAGACGATT
TCGGTAGGCGGGGACATAATTTACCGGCGAGGGATGGGGCAGCCGAGTGG
CATCACACACCAGCCGTGCCCAGCAGGCGGATCTGGTCAGGTCCATCACT
CGCGATGGTGAGAAGGTTCCGGCACAGTGTTGTCCCCAGTGGCATGTGGC
ACATGAATGCAATGGCCGAGAAAAACCTGACTACGGGTGGGCTTTCAAGC
CCCCAGGTTCCTGAGGGAGTTCCAAGTTTTCCTGCACGAATCCGGCCAGT
ATCTGGCGAGAAACGCCCTCCCGAAAATTGCACGGGCGGGCAAGATCTCT
CCGACGATTACAGTACTCCTGCGCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:2038315..2039090-

>mRNA_S-ischiensis_contig9.20628.1 ID=mRNA_S-ischiensis_contig9.20628.1|Name=mRNA_S-ischiensis_contig9.20628.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=996bp|location=Sequence derived from alignment at S-ischiensis_contig9:2038315..2039090- (Schizocladia ischiensis KU_0333)
CGGGACAGTTGTACTTCCAAAGTAGGTACTTCGTGCTGCTTACTAGCCGT
AGTAGAGACAGGGCCGCCTCTAGGGTATGAACTGTTCAACTATTCAGATC
GGACGGACCGCGGCGGGCAATCGTATGCTGGGCATGTCATCCATGATGGC
TGCAGGGACATCGTGAACCGCCAGAAGGCCGTCACGGAGGGTAAATCGTA
CTTCGAAGTACACCTCTTCCGGGGAAGAGGAGTACCTATATGCCAGACGT
GTAGTGGCCAATTGTTGAAAATCCTTCTGGTTCAGCCTGAGCCTGAGCAG
GTGACCGCTCGTCTGGTGAACGGGACAGTTGTACTTCCAAAGTAGGTACT
TCGTGCTGCTTACTAGCCGTAGTAGAGACAGGGCCGCCTCTAGGGTATGA
ACTGTTCAACTATTCAGATCGGACGGACCGCGGCGGGCAATCGTATGCTG
GGCATGTCATCCATGATGGCTGCAGGGACATCGTGAACCGCCAGAAGGCC
GTCACGGAGGGTAAATCGTACTTCGAAGTACACCTCTTCCGGGGAAGAGG
AGTACCTATATGCCAGACGTGTAGTGGCCAATTGTTGAAAATCCTTCTGG
TTCAGCCTGAGCCTGAGCAGGTGACCGCTCGTCTGGTGAAGACCTGTCCG
GCTAGAAATATGTTCCCCCGAAAATTGGCCCGTGGGGGCAAAATCTCTCA
GACGATTTCGGTAGGCGGGGACATAATTTACCGGCGAGGGATGGGGCAGC
CGAGTGGCATCACACACCAGCCGTGCCCAGCAGGCGGATCTGGTCAGGTC
CATCACTCGCGATGGTGAGACCTGTCCGGCTAGAAATATGTTCCCCCGAA
AATTGGCCCGTGGGGGCAAAATCTCTCAGACGATTTCGGTAGGCGGGGAC
ATAATTTACCGGCGAGGGATGGGGCAGCCGAGTGGCATCACACACCAGCC
GTGCCCAGCAGGCGGATCTGGTCAGGTCCATCACTCGCGATGGTGA
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