mRNA_S-ischiensis_contig9.20626.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20626.1 vs. uniprot
Match: A0A835Z9D0_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D0_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.180e-48 Identity = 80/122 (65.57%), Postives = 99/122 (81.15%), Query Frame = 1
Query: 1 VKVGHGGTLDPMATGVLVIGVGKGCKQLESYLKGTKAYRAEALLGIETDTQDSEGTETEAAPWDHITLEAVEAALGKFRGEIMQVPPMYSALKRDGKNLYELARKGITVEREARPRFVHRLE 366
+KVGHGGTLDPMATGVLV+G+G G K+LE YL+G K Y A +LG ETDT DSEG ETEA W H+T +A+ AL +FRG+IMQVPPMYSAL++DGK L+ELAR+G VER+ARP +++LE
Sbjct: 68 IKVGHGGTLDPMATGVLVLGIGSGTKELEKYLQGAKGYSAVGILGSETDTLDSEGQETEAMEWSHVTRDALMQALEQFRGDIMQVPPMYSALRKDGKRLHELARQGKVVERDARPVTIYQLE 189
BLAST of mRNA_S-ischiensis_contig9.20626.1 vs. uniprot
Match: F0YN09_AURAN (tRNA pseudouridine(55) synthase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YN09_AURAN) HSP 1 Score: 162 bits (411), Expect = 5.050e-48 Identity = 80/121 (66.12%), Postives = 97/121 (80.17%), Query Frame = 1
Query: 1 VKVGHGGTLDPMATGVLVIGVGKGCKQLESYLKGTKAYRAEALLGIETDTQDSEGTETEAAPWDHITLEAVEAALGKFRGEIMQVPPMYSALKRDGKNLYELARKGITVEREARPRFVHRL 363
VKVGHGGTLDP+A GVLV+GVG+GC++++ YLKG K YRA A LG ETDT D+EG E AP+DH+TL+A+EAAL F G+I Q PPMYSAL +GK LYELAR+GI VERE+RP + RL
Sbjct: 38 VKVGHGGTLDPLARGVLVVGVGRGCREMQGYLKGAKRYRAVAELGKETDTLDAEGAVVEEAPFDHVTLDALEAALPAFTGDIRQTPPMYSALHHEGKRLYELAREGIEVERESRPVTISRL 158
BLAST of mRNA_S-ischiensis_contig9.20626.1 vs. uniprot
Match: A0A7S2WB30_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WB30_9STRA) HSP 1 Score: 160 bits (405), Expect = 3.140e-46 Identity = 81/122 (66.39%), Postives = 95/122 (77.87%), Query Frame = 1
Query: 1 VKVGHGGTLDPMATGVLVIGVGKGCKQLESYLKGTKAYRAEALLGIETDTQDSEGTETEAAPWDHITLEAVEAALGKFRGEIMQVPPMYSALKRDGKNLYELARKGITVEREARPRFVHRLE 366
VKVGHGGTLDP+ATGVLV+GVG GCKQL YL G+K YRA LG ET+T D+EG E P DH+T EA+ AL FRG+I QVPPM+SAL +DGK LYELAR+GITVERE+RP +H L+
Sbjct: 69 VKVGHGGTLDPLATGVLVLGVGGGCKQLTDYLSGSKRYRALGRLGAETETLDTEGKVVEECPADHVTPEALLGALPDFRGDIEQVPPMFSALHKDGKRLYELARQGITVERESRPVTIHHLD 190
BLAST of mRNA_S-ischiensis_contig9.20626.1 vs. uniprot
Match: A0A813HPZ2_POLGL (tRNA pseudouridine(55) synthase (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HPZ2_POLGL) HSP 1 Score: 146 bits (368), Expect = 4.980e-42 Identity = 70/121 (57.85%), Postives = 92/121 (76.03%), Query Frame = 1
Query: 4 KVGHGGTLDPMATGVLVIGVGKGCKQLESYLKGTKAYRAEALLGIETDTQDSEGTETEAAPWDHITLEAVEAALGKFRGEIMQVPPMYSALKRDGKNLYELARKGITVEREARPRFVHRLE 366
KVGHGGTLDP ATGVLV+G+G G + + S+L G+KAY A +G ETDT+D+ G AP++H+T E +E + +F GEI+QVPPM+SAL+ +GK LYELA +G+TVEREAR VH+LE
Sbjct: 47 KVGHGGTLDPEATGVLVLGIGSGTRMMTSFLHGSKAYEATVTMGSETDTEDASGKVVATAPFEHVTKEKMEEIMPQFLGEILQVPPMFSALRVNGKRLYELAHQGVTVEREARKVLVHKLE 167
BLAST of mRNA_S-ischiensis_contig9.20626.1 vs. uniprot
Match: A0A7S2MBG8_9STRA (tRNA pseudouridine(55) synthase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MBG8_9STRA) HSP 1 Score: 148 bits (374), Expect = 2.470e-41 Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = 1
Query: 1 VKVGHGGTLDPMATGVLVIGVGKGCKQLESYLKGTKAYRAEALLGIETDTQDSEGTETEAAPWDHITLEAVEAALGKFRGEIMQVPPMYSALKRDGKNLYELARKGITVEREAR 342
VKVGHGGTLDP+ATGVLV+G+GKGC+QL YL G K YRA LG++TDT DS G PWDH+T + AL FRGEI+Q+PPM+SA ++DGK LY+LAR+G VEREAR
Sbjct: 85 VKVGHGGTLDPLATGVLVLGIGKGCRQLTDYLAGAKRYRAVGKLGMKTDTLDSLGEAVAEKPWDHVTDAQLSDALEAFRGEILQIPPMFSAKRKDGKRLYDLAREGKVVEREAR 198
BLAST of mRNA_S-ischiensis_contig9.20626.1 vs. uniprot
Match: A0A8H6TUH0_MYCCL (tRNA pseudouridine(55) synthase n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A8H6TUH0_MYCCL) HSP 1 Score: 147 bits (370), Expect = 6.480e-41 Identity = 77/124 (62.10%), Postives = 89/124 (71.77%), Query Frame = 1
Query: 1 VKVGHGGTLDPMATGVLVIGVGKGCKQLESYLKGTKAYRAEALLGIETDTQDSEGTETEAAPWDHITLEAVEAALGKFRGEIMQVPPMYSALKRDGKNLYELARKGITVER--EARPRFVHRLE 366
VK+G GGTLDP+A GVLV+GVGK K+L +L+ K YR LLG ETD+ DSEG + APW H+T E VE AL KFRGEI QVPP++SALK DGK LYE ARKGI + R EAR VH LE
Sbjct: 64 VKIGQGGTLDPLADGVLVVGVGKATKKLNQFLECVKEYRTTCLLGCETDSYDSEGARVKTAPWKHVTREMVEQALEKFRGEIQQVPPIFSALKMDGKPLYEYARKGIPLPRPIEARQATVHSLE 187
BLAST of mRNA_S-ischiensis_contig9.20626.1 vs. uniprot
Match: A0A8H5BWU7_9AGAR (tRNA pseudouridine(55) synthase n=1 Tax=Psilocybe cf. subviscida TaxID=2480587 RepID=A0A8H5BWU7_9AGAR) HSP 1 Score: 147 bits (370), Expect = 8.330e-41 Identity = 77/124 (62.10%), Postives = 91/124 (73.39%), Query Frame = 1
Query: 1 VKVGHGGTLDPMATGVLVIGVGKGCKQLESYLKGTKAYRAEALLGIETDTQDSEGTETEAAPWDHITLEAVEAALGKFRGEIMQVPPMYSALKRDGKNLYELARKGITVER--EARPRFVHRLE 366
+K+G GGTLDP+A GVLVIGV KG K+L +L TK YR LLG ETD+ DSEG APW H+T E+VEAAL KFRG+I QVPP++SALK DG+ L+E ARKGI + R EARP VH LE
Sbjct: 68 IKMGQGGTLDPLADGVLVIGVNKGTKKLNEFLNCTKEYRTTCLLGCETDSYDSEGVRVRLAPWRHVTKESVEAALPKFRGDITQVPPIFSALKMDGRPLHEYARKGIPLPRPIEARPVTVHSLE 191
BLAST of mRNA_S-ischiensis_contig9.20626.1 vs. uniprot
Match: A0A0C3FSI9_PILCF (tRNA pseudouridine(55) synthase n=1 Tax=Piloderma croceum (strain F 1598) TaxID=765440 RepID=A0A0C3FSI9_PILCF) HSP 1 Score: 146 bits (369), Expect = 1.440e-40 Identity = 74/118 (62.71%), Postives = 86/118 (72.88%), Query Frame = 1
Query: 1 VKVGHGGTLDPMATGVLVIGVGKGCKQLESYLKGTKAYRAEALLGIETDTQDSEGTETEAAPWDHITLEAVEAALGKFRGEIMQVPPMYSALKRDGKNLYELARKGITVEREARPRFV 354
VK+G GGTLDP+A GVLV+GVGKG K+L L+G K YR ALLG ETDT DSEG APW H+T E VE+AL +FRGEI+Q PP++SALK DGK LYE ARKGI + R R V
Sbjct: 71 VKIGQGGTLDPLADGVLVVGVGKGTKRLNDLLEGAKEYRTTALLGCETDTYDSEGARVRLAPWHHVTKENVESALEQFRGEILQTPPIFSALKMDGKPLYEYARKGIPLPRPIEKRKV 188
BLAST of mRNA_S-ischiensis_contig9.20626.1 vs. uniprot
Match: A0A2R6NMT9_9APHY (tRNA pseudouridine(55) synthase n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NMT9_9APHY) HSP 1 Score: 146 bits (369), Expect = 1.440e-40 Identity = 77/124 (62.10%), Postives = 90/124 (72.58%), Query Frame = 1
Query: 1 VKVGHGGTLDPMATGVLVIGVGKGCKQLESYLKGTKAYRAEALLGIETDTQDSEGTETEAAPWDHITLEAVEAALGKFRGEIMQVPPMYSALKRDGKNLYELARKGITVER--EARPRFVHRLE 366
VK+G GGTLDP+A GVLVIG+GKG K L S L K YR ALLG ETDT DSEG++ APW H+T E VE AL +FRGEI Q PP++SALK DGK+LY+ AR+GI + R E RP VH LE
Sbjct: 66 VKIGQGGTLDPLADGVLVIGIGKGTKHLTSLLDCVKEYRTTALLGCETDTYDSEGSQVRVAPWKHVTREQVENALEQFRGEIKQAPPIFSALKMDGKHLYDYARQGIPLPRPIEKRPVTVHSLE 189
BLAST of mRNA_S-ischiensis_contig9.20626.1 vs. uniprot
Match: A0A0D2MSW8_HYPSF (tRNA pseudouridine(55) synthase n=1 Tax=Hypholoma sublateritium (strain FD-334 SS-4) TaxID=945553 RepID=A0A0D2MSW8_HYPSF) HSP 1 Score: 146 bits (368), Expect = 1.660e-40 Identity = 76/124 (61.29%), Postives = 88/124 (70.97%), Query Frame = 1
Query: 1 VKVGHGGTLDPMATGVLVIGVGKGCKQLESYLKGTKAYRAEALLGIETDTQDSEGTETEAAPWDHITLEAVEAALGKFRGEIMQVPPMYSALKRDGKNLYELARKGITVEREARPRFV--HRLE 366
VK+G GGTLDP+A GVLVIGVGKG K+L +L TK Y LLG ETDT DSEG APW H++ E VEAAL +F+GEI Q+PP++SALK DGK LYE ARKGI + R PR V H LE
Sbjct: 68 VKIGQGGTLDPLADGVLVIGVGKGTKKLNDFLNCTKEYETTCLLGCETDTYDSEGVRVRLAPWQHVSREKVEAALPQFQGEITQIPPIFSALKMDGKPLYEYARKGIPLPRPIEPRSVTVHSLE 191 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20626.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20626.1 >prot_S-ischiensis_contig9.20626.1 ID=prot_S-ischiensis_contig9.20626.1|Name=mRNA_S-ischiensis_contig9.20626.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=122bp VKVGHGGTLDPMATGVLVIGVGKGCKQLESYLKGTKAYRAEALLGIETDTback to top mRNA from alignment at S-ischiensis_contig9:2034025..2036028+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20626.1 ID=mRNA_S-ischiensis_contig9.20626.1|Name=mRNA_S-ischiensis_contig9.20626.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2004bp|location=Sequence derived from alignment at S-ischiensis_contig9:2034025..2036028+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:2034025..2036028+ >mRNA_S-ischiensis_contig9.20626.1 ID=mRNA_S-ischiensis_contig9.20626.1|Name=mRNA_S-ischiensis_contig9.20626.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=732bp|location=Sequence derived from alignment at S-ischiensis_contig9:2034025..2036028+ (Schizocladia ischiensis KU_0333)back to top |