mRNA_S-ischiensis_contig9.20619.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20619.1
Unique NamemRNA_S-ischiensis_contig9.20619.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig9.20619.1 vs. uniprot
Match: A0A6H5KGL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL2_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 4.180e-54
Identity = 106/187 (56.68%), Postives = 128/187 (68.45%), Query Frame = 1
Query:   37 FELMVLDVAALGGLDLALQLGIPYMFNSPSLAFDLSGKQAGAVLPAWGTGLSRRMRLMQRCMNVMFPRLLSVALTPPFMSMNKAQREIGLEPFHTQDDVFRGARLLVNTAFGLEYRHPVSPLTVMTGPLLPPDIARELHLSPPPWAASTPANASSSSSSYPGAGSVLATPYPIASWLEGKMSLVAPG 597
            F+L+VLD+ +LGGLD A +LGIPYMFNSPSL FDLSG+   A LPAWGTG++RRM L  R  N + PR LSV LTP F++MNKA+RE GLEPF+ QDDVF GAR+LVNTAFG EY + V+PL  MTGPLLPP +AR L                   S+     +V A P+ I +WL G  +LVAPG
Sbjct:  336 FDLVVLDMGSLGGLDFAQKLGIPYMFNSPSLLFDLSGRHVTATLPAWGTGMARRMSLGDRLQNAISPRALSVFLTPAFIAMNKARREQGLEPFYAQDDVFHGARVLVNTAFGFEYPYGVNPLVEMTGPLLPPRVARAL-------------------SAKRELAAVGALPFLIRTWLGGTGALVAPG 503          
BLAST of mRNA_S-ischiensis_contig9.20619.1 vs. uniprot
Match: D8LNA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNA0_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 1.800e-51
Identity = 88/131 (67.18%), Postives = 102/131 (77.86%), Query Frame = 1
Query:   58 VAALGGLDLALQLGIPYMFNSPSLAFDLSGKQAGAVLPAWGTGLSRRMRLMQRCMNVMFPRLLSVALTPPFMSMNKAQREIGLEPFHTQDDVFRGARLLVNTAFGLEYRHPVSPLTVMTGPLLPPDIAREL 450
            + +LGGLD A +LGIPYMFNSPSL FDLSG+   A LPAWGTG++RRM L  R  N + PR LSV LTP F++MNKA+RE GLEPF  QDDVF GAR+LVNTAFG EY + V+PL  MTGPLLPP +AR L
Sbjct:    1 MGSLGGLDFAQKLGIPYMFNSPSLLFDLSGRHVTATLPAWGTGMARRMSLGDRLQNAISPRALSVFLTPAFIAMNKARREQGLEPFLAQDDVFHGARVLVNTAFGFEYPYGVNPLVEMTGPLLPPRVARAL 131          
BLAST of mRNA_S-ischiensis_contig9.20619.1 vs. uniprot
Match: A0A1V9ZKP0_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZKP0_9STRA)

HSP 1 Score: 166 bits (419), Expect = 4.850e-45
Identity = 81/136 (59.56%), Postives = 103/136 (75.74%), Query Frame = 1
Query:   22 APPPSFELMVLDVAALGGLDLALQLGIPYMFNSPSLAFDLSGKQAGAVLPAWGTGLSRRMRLMQRCMNVMFPRLLSVALTPPFMSMNKAQREIGLEPFHTQDDVFRGARLLVNTAFGLEYRHPVSPLTVMTGPLLP 429
            A PP  +L+V+D+A +GG DL  +L +PY+ NSPS+ FD+ G  +   +PAWGTG S  M L  RCMN++FPRLLSVALTPPFM +NKA+ E+ L PF +Q D+F+GAR+LVNTAFGLEY  P+SPL  M GPLLP
Sbjct:  150 ASPP--DLVVVDIATIGGHDLVHKLNLPYLVNSPSILFDMGGTPS--YVPAWGTGFSIHMSLWNRCMNLLFPRLLSVALTPPFMQVNKARWELNLPPFRSQHDIFKGARVLVNTAFGLEYARPLSPLVEMVGPLLP 281          
BLAST of mRNA_S-ischiensis_contig9.20619.1 vs. uniprot
Match: A0A6A4Z0Q8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z0Q8_9STRA)

HSP 1 Score: 160 bits (404), Expect = 8.720e-45
Identity = 78/140 (55.71%), Postives = 104/140 (74.29%), Query Frame = 1
Query:   28 PPSFELMVLDVAALGGLDLALQLGIPYMFNSPSLAFDLSGKQAGAVLPAWGTGLSRRMRLMQRCMNVMFPRLLSVALTPPFMSMNKAQREIGLEPFHTQDDVFRGARLLVNTAFGLEYRHPVSPLTVMTGPLLPPDIARE 447
            PP  +L+V+D+A +GG DL  +LG+PY+ NSPS+ FD+ G  +   +PAWGTG S  M L  RCMN++FPRLLSVALTPPFM +NKA+ E+ L P+ +Q D+F+GAR+LVNTA GLEY  P+SPL  + GP++P D   E
Sbjct:  155 PP--DLVVVDIATIGGHDLVHKLGLPYLVNSPSILFDIGGTPS--YVPAWGTGFSIHMSLWNRCMNLLFPRLLSVALTPPFMQINKARWELQLTPYRSQHDMFKGARVLVNTAVGLEYPRPLSPLVELVGPIIPLDAFNE 290          
BLAST of mRNA_S-ischiensis_contig9.20619.1 vs. uniprot
Match: A0A067C9X2_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C9X2_SAPPC)

HSP 1 Score: 164 bits (415), Expect = 2.240e-44
Identity = 79/130 (60.77%), Postives = 100/130 (76.92%), Query Frame = 1
Query:   40 ELMVLDVAALGGLDLALQLGIPYMFNSPSLAFDLSGKQAGAVLPAWGTGLSRRMRLMQRCMNVMFPRLLSVALTPPFMSMNKAQREIGLEPFHTQDDVFRGARLLVNTAFGLEYRHPVSPLTVMTGPLLP 429
            +L+VLD+A +GG DL  +L +PY+ NSPS+ FD+ G  +   +PAWGTG S  M L  RCMN++FPRLLSVALTPPFM +NKA+ E+ L PF +Q D+F+GAR+LVNTAFGLEY  P+SPL  M GPLLP
Sbjct:  158 DLVVLDIATIGGHDLVHKLQLPYLVNSPSILFDMGGTPS--YVPAWGTGFSIHMSLWNRCMNLLFPRLLSVALTPPFMQVNKARWELDLAPFRSQHDIFKGARILVNTAFGLEYARPLSPLIEMVGPLLP 285          
BLAST of mRNA_S-ischiensis_contig9.20619.1 vs. uniprot
Match: D0N6P0_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0N6P0_PHYIT)

HSP 1 Score: 159 bits (402), Expect = 2.570e-44
Identity = 78/139 (56.12%), Postives = 103/139 (74.10%), Query Frame = 1
Query:   13 GTGAPPPSFELMVLDVAALGGLDLALQLGIPYMFNSPSLAFDLSGKQAGAVLPAWGTGLSRRMRLMQRCMNVMFPRLLSVALTPPFMSMNKAQREIGLEPFHTQDDVFRGARLLVNTAFGLEYRHPVSPLTVMTGPLLP 429
            GT A  P  +++V+D+A +G  DLA +L IPY+ NSPSL FDL G  A + +PAWGTG S  M L  RCMN++FPRLLSVALTPPFM +NK + E+ L PF +Q D+F+GAR+++NTAFGLE+  P+SPL    GP++P
Sbjct:  194 GTNANAP--DILVMDIATVGAQDLAHKLKIPYILNSPSLLFDLGG--APSYVPAWGTGFSENMSLWNRCMNILFPRLLSVALTPPFMELNKMRYELDLPPFRSQHDLFKGARVILNTAFGLEHPQPLSPLVDAVGPIMP 328          
BLAST of mRNA_S-ischiensis_contig9.20619.1 vs. uniprot
Match: A0A421GHT4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GHT4_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.050e-43
Identity = 75/130 (57.69%), Postives = 100/130 (76.92%), Query Frame = 1
Query:   40 ELMVLDVAALGGLDLALQLGIPYMFNSPSLAFDLSGKQAGAVLPAWGTGLSRRMRLMQRCMNVMFPRLLSVALTPPFMSMNKAQREIGLEPFHTQDDVFRGARLLVNTAFGLEYRHPVSPLTVMTGPLLP 429
            +L+VLD+A +G  DLA +L +PY+ NSPSL FDL G  A + +PAWGTG S+ M L  RCMN++FPRLLSVALTPPFM +NK + E+ L PF +Q D+F+GAR+++NTAFGLE+  P+SPL    GP++P
Sbjct:   45 DLVVLDIATVGAQDLAHKLKVPYILNSPSLLFDLGG--APSYVPAWGTGFSKNMSLWNRCMNILFPRLLSVALTPPFMELNKMRYELDLPPFRSQHDLFKGARVILNTAFGLEHAQPLSPLVDAVGPIMP 172          
BLAST of mRNA_S-ischiensis_contig9.20619.1 vs. uniprot
Match: D0NPG9_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NPG9_PHYIT)

HSP 1 Score: 159 bits (402), Expect = 6.340e-43
Identity = 78/139 (56.12%), Postives = 103/139 (74.10%), Query Frame = 1
Query:   13 GTGAPPPSFELMVLDVAALGGLDLALQLGIPYMFNSPSLAFDLSGKQAGAVLPAWGTGLSRRMRLMQRCMNVMFPRLLSVALTPPFMSMNKAQREIGLEPFHTQDDVFRGARLLVNTAFGLEYRHPVSPLTVMTGPLLP 429
            GT A  P  +++V+D+A +G  DLA +L IPY+ NSPSL FDL G  A + +PAWGTG S  M L  RCMN++FPRLLSVALTPPFM +NK + E+ L PF +Q D+F+GAR+++NTAFGLE+  P+SPL    GP++P
Sbjct:   84 GTNANAP--DILVMDIATVGAQDLAHKLKIPYILNSPSLLFDLGG--APSYVPAWGTGFSENMSLWNRCMNILFPRLLSVALTPPFMELNKMRYELDLPPFRSQHDLFKGARVILNTAFGLEHPQPLSPLVDAVGPIMP 218          
BLAST of mRNA_S-ischiensis_contig9.20619.1 vs. uniprot
Match: A0A6G0XBW6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XBW6_9STRA)

HSP 1 Score: 160 bits (405), Expect = 9.060e-43
Identity = 78/136 (57.35%), Postives = 103/136 (75.74%), Query Frame = 1
Query:   22 APPPSFELMVLDVAALGGLDLALQLGIPYMFNSPSLAFDLSGKQAGAVLPAWGTGLSRRMRLMQRCMNVMFPRLLSVALTPPFMSMNKAQREIGLEPFHTQDDVFRGARLLVNTAFGLEYRHPVSPLTVMTGPLLP 429
            A PP  +L+V+D+A LGG DL  +L +PY+ NSPS+ FD+ G  +   +PAWGTG S  M L  RCMN++FPRLLSVALTPPFM +NKA+ E+ L PF +Q D+F+GAR+LVNTA+GLEY  P+SPL  + GP++P
Sbjct:  163 ANPP--DLVVVDIATLGGQDLVHKLQLPYVINSPSILFDIGGTPS--YVPAWGTGFSLHMSLWNRCMNLLFPRLLSVALTPPFMQINKARWELQLTPFRSQHDLFKGARILVNTAYGLEYPRPLSPLVDLVGPMIP 294          
BLAST of mRNA_S-ischiensis_contig9.20619.1 vs. uniprot
Match: A0A024TBU4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TBU4_9STRA)

HSP 1 Score: 160 bits (405), Expect = 1.050e-42
Identity = 77/136 (56.62%), Postives = 101/136 (74.26%), Query Frame = 1
Query:   40 ELMVLDVAALGGLDLALQLGIPYMFNSPSLAFDLSGKQAGAVLPAWGTGLSRRMRLMQRCMNVMFPRLLSVALTPPFMSMNKAQREIGLEPFHTQDDVFRGARLLVNTAFGLEYRHPVSPLTVMTGPLLPPDIARE 447
             L+V+D+A +GG DL  +LG+PY+ NSPS+ FD+ G  +   +PAWGTG S  M L  RCMN++FPRLLSVALTPPFM +NKA+ E+ L P+ +Q D+F+GAR+LVNTA GLEY  P+SPL  + GP+LP D   E
Sbjct:  171 HLVVVDIATIGGHDLVHKLGLPYVVNSPSILFDIGGTPS--YVPAWGTGFSIHMSLWNRCMNLLFPRLLSVALTPPFMQINKARWELQLTPYRSQHDIFKGARILVNTAVGLEYPRPLSPLVELVGPILPLDAFNE 304          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGL2_9PHAE4.180e-5456.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LNA0_ECTSI1.800e-5167.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9ZKP0_9STRA4.850e-4559.56Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6A4Z0Q8_9STRA8.720e-4555.71Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A067C9X2_SAPPC2.240e-4460.77Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
D0N6P0_PHYIT2.570e-4456.12Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A421GHT4_9STRA1.050e-4357.69Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
D0NPG9_PHYIT6.340e-4356.12Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A6G0XBW6_9STRA9.060e-4357.35Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024TBU4_9STRA1.050e-4256.62Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1996525..2000169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.0
Seed ortholog evalue1.7e-41
Seed eggNOG ortholog2880.D8LNA0
EggNOG free text desc.transferase activity, transferring hexosyl groups
EggNOG OGsKOG1192@1,KOG1192@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size602
Cds size600
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20619.1prot_S-ischiensis_contig9.20619.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1996525..2000167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817390.199415-CDS-S-ischiensis_contig9:1996524..19966491622817390.199415-CDS-S-ischiensis_contig9:1996524..1996649Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1996525..1996649 +
1695741077.937757-CDS-S-ischiensis_contig9:1996524..19966491695741077.937757-CDS-S-ischiensis_contig9:1996524..1996649Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1996525..1996649 +
1622817390.2108042-CDS-S-ischiensis_contig9:1997931..19980911622817390.2108042-CDS-S-ischiensis_contig9:1997931..1998091Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1997932..1998091 +
1695741077.9552362-CDS-S-ischiensis_contig9:1997931..19980911695741077.9552362-CDS-S-ischiensis_contig9:1997931..1998091Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1997932..1998091 +
1622817390.2241585-CDS-S-ischiensis_contig9:1999852..20001671622817390.2241585-CDS-S-ischiensis_contig9:1999852..2000167Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1999853..2000167 +
1695741077.9711995-CDS-S-ischiensis_contig9:1999852..20001671695741077.9711995-CDS-S-ischiensis_contig9:1999852..2000167Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1999853..2000167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20619.1

>prot_S-ischiensis_contig9.20619.1 ID=prot_S-ischiensis_contig9.20619.1|Name=mRNA_S-ischiensis_contig9.20619.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=200bp
GSSAGTGAPPPSFELMVLDVAALGGLDLALQLGIPYMFNSPSLAFDLSGK
QAGAVLPAWGTGLSRRMRLMQRCMNVMFPRLLSVALTPPFMSMNKAQREI
GLEPFHTQDDVFRGARLLVNTAFGLEYRHPVSPLTVMTGPLLPPDIAREL
HLSPPPWAASTPANASSSSSSYPGAGSVLATPYPIASWLEGKMSLVAPGH
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mRNA from alignment at S-ischiensis_contig9:1996525..2000169+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20619.1 ID=mRNA_S-ischiensis_contig9.20619.1|Name=mRNA_S-ischiensis_contig9.20619.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3645bp|location=Sequence derived from alignment at S-ischiensis_contig9:1996525..2000169+ (Schizocladia ischiensis KU_0333)
GGCTCGTCCGCCGGGACGGGTGCGCCGCCACCATCGTTCGAGCTCATGGT CCTTGATGTGGCTGCGTTGGGGGGCTTAGACCTGGCCCTGCAGCTGGGGA TCCCCTACATGTTCAACTCGCCCAGGTGCGTAAGTGTTGATGTGATGTGA TGTGATGTGATGTGAACACTAGAGTACAAGCCACATCATATCACATCGTA TAAGTAACATCATTTCCATTGTTGAGGTCTTGCGTGACGTAGCCTGAACC TACTATATATATATATGTACGCACGTTGAGCTTGCTGTAGTCCCGATACC TTGACCACCTGTATATGTACTCACGTTGTGCTTGTCGTCGTCCCAGTCAA CTCGCCCATGTGCGTATTGATAGCCTACGAGTACGAGGGGAATCGGAGAG GACGGACTGCTGTGTTGGACTGTACTGTACGGTACTGTGCTGCGCTGCGG TGTGCTGTGCTGTGCTTTGCTGTGCTGTGCTGTGCTGTACTGGACTGTAG TGCACTGTACTGTACTGTACTGTACTGTGTTGTACTGTACTGTACTGTAC TGTGCTGTGCTGTATTTCACTGTACGGTACGGTACTGCACTCTACTGCAC TGTACTGCACTCTACTGTACTGCACTGTACTGTACTGTACTGTACTGGAC TGTGCTGTGCTATGCTGCGCTGTGCTGTGCTGTGCACAACGTGATTCTGT GCTGCTGTAGAGCCCAAACACTTTGTTGGCGTGCCCAAGGGGCCGCCCGC CAAGTTTTGTGGTGAACTGTACGAGTGCTGTACATACTGTACTCGAGTAC AGTAACGTGGCATCTTTGCGAGCGCCCAGGAACAAACGTTTCTACTGTAC TGATTCTGTAGTGAAGGAAGTACTTCAAAGTACCTCAGTACAGTCACTGT GACTGCTCACGATCCCCTCCCGTCCGATGAGTGTGTCGTGTGCAATACCG CCTGTGAGCCGCCCATGCCCATCCTCCCCCGAGCCCGCCCTCCCTTCCTA CGCCCTTCCCACACTCTCCCCGCCTCCCTCCCTCCCTCCTCCCTCCCTCC CCCCCTCCCCCCCCCTCCCTCCCGCCCCCCCCTCCCTCCCTCCCCCCCCC TCCCTCCCTCCCCCCTCCCTCCCTCGCTGCGTGCCTTCTCGTTCACTCGC ACTGCTGTCCTGTCCCTCCTCCCTCACTACCTATCCCCTCCACCCTCCCA GCTTGGCGTTCGACCGCTCGGGCAAGCAAGCGTTAAAAAGCACCTGTTCA TTCTGTTCTCTTTACGAAGTATAATTTAGTTGTAAGTTGTTTTATTTTGT CGTAAATTTTAATTCTCTCTAGAACAGGCCCAGTTACATAGACACGAAAC ACTCAAATGTTTTGCCCTTCTCTCCTCCCTCGCTACCCATCCCCTCCGCC CTTCCAGCTTGGCCTTCGACCTCTCGGGCAAGCAGGCGGGCGCGGTCCTG CCGGCGTGGGGGACGGGCCTGTCGCGGCGCATGCGCCTCATGCAGCGGTG CATGAACGTTATGTTCCCCAGGCTGCTGTCCGTGGCGCTCACGCCACCCT TCATGAGCATGAACAAGGTGTGTGCGTGTGTGATATGATGTGATGTGATG CGATGTCAACTGAAAAACACTGTAGTTTGACATCACATCACTTGTGTCAT CGGTGTATGTTGTCCGTGGCGCTCACGCCGCCCTTCGTGAGCATGACAAG GTATGTGCGTGTGTGATGTGATGTGATGTGATGCAATGTCAACTCAAAAA CACTGTAGTTTGACATCACATCACATCACATCACATTGTGTCATCAGTGT ATGTTGTCCGTGGCGCTCACGCCGCCCTTCATGAGCATGAACAAGGTGTG TGCGTGTGTGATGTGATGCGATGTCAACTAAAAAACACTGTAGTTTGACA TCACATCACATCACAACAGACCATCGGTTCGCCAGGATGCTGCCCGTGGC GCTCACGCTGCCCTTGATGAGCATGGACAAGTTGTGTGTGTGTGATGTGA TGTGATGTGCACACAAAAGCACTGTAGTTTGACATCATATAACATCACAA GAAACCATCGGTGTGTGTGTGTGTATGTACTTCGAAGCGCGTGTGTGTGT ATGTGTGCACCCGCACTTCATGAGCATGAACCAGGTGTGTGTATGTGTGA TGTGGTGTGAGGCGATGTGCACACAATAGCACTGTAGTTTGACATCACAT CACGTCGCAAAAACCATCGGTGTGTGTGTGTGTGTGTGTGCGCGCGCGTG TGTCGTGTGAGCCCGTGTGTAGGCCGCCTGTTTGCCCCTTGTCTGGGTGA GCGTACCTACCATGCATGCACCGGCTAAAACTGTTGAACCCCCTTTCCCC TCCCCCGCCCCCCCCTAGCCCCCCCCCCCCAACCTCCGCGACGTCCCCCT GTCCCCTGCACCAGTGATAGAATATCTATGCAAAGCAACCTATTTATCGA CAACACTGCTCTACTTTGAGTGGTAGATAAGCGGCGAGTTCCAGGCCCCG TGCCAAAAGGCTCGTCCCGAAACGGGACTCAACGAAGCCCTTCTTCCCCT CGCAGGGCAAACAGAAAACAAATATAAAGAAGGAAAAGGCTACATATCTA TCGATAGTGGATGTTCGATAGTTTGACCCACACTATATCCAAGTAGTCTG ACGACTGCAGCACAAGCAGTACTTCGAAGCACTCGAGTGCTACAGTAATA CGGAGTAGCAGGTGAGCAGATACAGCGCCTTTGAGTCACGGTAGAGGCAG CCTATCCAAGTAGTTTTTGGCATGCGGACAGAACGCGAGTGGAAAAGAGG AGGTGTTCCTACTTGCGCGAGTTCAGGGCCCCCTTCCCCCGGAAGCCCGT GTTTTCACTCGCGTTCACTCACAGGGCACATAGAGCAGGAAAACAAACAG AAAAACAAAGGGGGAAGAGGGCGGGAAGGAACAACAGCGGAGGAAGGCAA GTAGTTAGTGACGCCACCCACCAAATCAGTCGAGCCCGATAACTATCTAC TGATCGATGTTCCATCACTGCCCTGCGCAGGCCCAGCGGGAGATTGGCCT GGAGCCCTTCCACACCCAGGACGACGCCTTCCGAGGCGCACGCCTCCTCG TGAACACGACTAAAACTGTTGAACCCCCTTTCCCCTCCACCACCCCCCCT ACCCCCCTAGTATAAGAACACTCAATTCTTAAATGGGACAACTACTCCTA TGAGAACACGCAATCTCACACACGTGCGATTGTACCTCGTTGCTTCATAC TTTGAAGTACAATTTATATTAATCACCCCCTACCCCCCCCCCCCACCTCC GCGACCTCCCCTTTCCCCCTGCTTACAGGCCCAGCGGGAGATTGGGTTGG AGCCCTTCCACACCCAGGACGACGTATTCCGAGGCGCACGCCTCCTCGTA AACACTGCCTTCGGCCTCGAGTACCGGCACCCGGTCAGCCCCCTCACCGT CATGACGGGGCCCCTCCTCCCCCCCGACATCGCCCGCGAGCTGCACCTCT CCCCGCCTCCTTGGGCGGCATCCACGCCCGCGAACGCCTCCTCCTCCTCC TCCTCGTACCCCGGGGCGGGCAGCGTGCTGGCCACCCCGTACCCCATCGC CAGTTGGCTGGAAGGGAAGATGAGCCTGGTGGCACCGGGACACCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1996525..2000169+

>mRNA_S-ischiensis_contig9.20619.1 ID=mRNA_S-ischiensis_contig9.20619.1|Name=mRNA_S-ischiensis_contig9.20619.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1200bp|location=Sequence derived from alignment at S-ischiensis_contig9:1996525..2000169+ (Schizocladia ischiensis KU_0333)
GGCTCGTCCGCCGGGACGGGTGCGCCGCCACCATCGTTCGAGCTCATGGT
CCTTGATGTGGCTGCGTTGGGGGGCTTAGACCTGGCCCTGCAGCTGGGGA
TCCCCTACATGTTCAACTCGCCCAGGGCTCGTCCGCCGGGACGGGTGCGC
CGCCACCATCGTTCGAGCTCATGGTCCTTGATGTGGCTGCGTTGGGGGGC
TTAGACCTGGCCCTGCAGCTGGGGATCCCCTACATGTTCAACTCGCCCAG
CTTGGCCTTCGACCTCTCGGGCAAGCAGGCGGGCGCGGTCCTGCCGGCGT
GGGGGACGGGCCTGTCGCGGCGCATGCGCCTCATGCAGCGGTGCATGAAC
GTTATGTTCCCCAGGCTGCTGTCCGTGGCGCTCACGCCACCCTTCATGAG
CATGAACAAGCTTGGCCTTCGACCTCTCGGGCAAGCAGGCGGGCGCGGTC
CTGCCGGCGTGGGGGACGGGCCTGTCGCGGCGCATGCGCCTCATGCAGCG
GTGCATGAACGTTATGTTCCCCAGGCTGCTGTCCGTGGCGCTCACGCCAC
CCTTCATGAGCATGAACAAGGCCCAGCGGGAGATTGGGTTGGAGCCCTTC
CACACCCAGGACGACGTATTCCGAGGCGCACGCCTCCTCGTAAACACTGC
CTTCGGCCTCGAGTACCGGCACCCGGTCAGCCCCCTCACCGTCATGACGG
GGCCCCTCCTCCCCCCCGACATCGCCCGCGAGCTGCACCTCTCCCCGCCT
CCTTGGGCGGCATCCACGCCCGCGAACGCCTCCTCCTCCTCCTCCTCGTA
CCCCGGGGCGGGCAGCGTGCTGGCCACCCCGTACCCCATCGCCAGTTGGC
TGGAAGGGAAGATGAGCCTGGTGGCACCGGGACACGCCCAGCGGGAGATT
GGGTTGGAGCCCTTCCACACCCAGGACGACGTATTCCGAGGCGCACGCCT
CCTCGTAAACACTGCCTTCGGCCTCGAGTACCGGCACCCGGTCAGCCCCC
TCACCGTCATGACGGGGCCCCTCCTCCCCCCCGACATCGCCCGCGAGCTG
CACCTCTCCCCGCCTCCTTGGGCGGCATCCACGCCCGCGAACGCCTCCTC
CTCCTCCTCCTCGTACCCCGGGGCGGGCAGCGTGCTGGCCACCCCGTACC
CCATCGCCAGTTGGCTGGAAGGGAAGATGAGCCTGGTGGCACCGGGACAC
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