mRNA_S-ischiensis_contig9.20617.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20617.1 vs. uniprot
Match: D8LLN5_ECTSI (Radical SAM core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLN5_ECTSI) HSP 1 Score: 353 bits (906), Expect = 7.200e-114 Identity = 199/378 (52.65%), Postives = 252/378 (66.67%), Query Frame = 1
Query: 85 RVSYPCARNAWEGGARRPRRCWLADSTAVALEQ-VQPTREGQGVEADLLGRADVERDSQGKIMLKGLCLDEMERLMDDLGIKRQKALVLAKWMYHRGRLARDVEEARGRAGG--------------------ERFCLGEKDLAVLGKVATADGAMELEDVRVARDGTRKVLLRLTSGEGAGKAIEAVIIPMMQGRRQVARYSLCVSSQVGCAMNCQFCNTGRMGLMANLQAAQIVEQVVWARRYLESVGDPTPLTGVVFMGMGEPFDNFQRVMRALSIMTDPREGLRLKGSRVTVSTVGLVPEIHRFCSDPTNPANLAVSLHAPTDHLRGQVVPLNQRYPLTQLIPALEHNFPREAPTRHSHQPG-----ASSTGAPA 1140
+ S C R+ +RPR +A + VA+EQ V +GQ A D E D GK+MLKGL E ++LM+ LG K +A VLA W+YH RL RD+ E G AG + +G+K + +VATADG +ELEDV++A DGTRK++ LTSGEGAGK +E VIIPM++G ++ RY++CVSSQVGCAMNCQFC TGR+GLMANLQAAQIVEQV+ A+RYLE+VGDP+P+TGVVFMGMGEPFDN+ RVMRA+ I+TDPR G+RLK S VTVSTVGLVP+I RFC DP N A+LA+SLH+ D +R +++P+N+RYPL QL L +FPR + G ASS APA
Sbjct: 42 KTSLSCGRSL-----KRPRTDMMASDSLVAVEQPVVDEVDGQATWAK-----DFELDFHGKVMLKGLLFSETQQLMERLGEKAGRAEVLAGWLYHDRRLIRDIAETAGGAGSAEPGGDATNSNTNRSGSLVSSKSRIGKKTRDAVREVATADGGLELEDVQLAADGTRKLVSVLTSGEGAGKKVETVIIPMLRGPQREPRYTVCVSSQVGCAMNCQFCFTGRLGLMANLQAAQIVEQVLVAKRYLETVGDPSPVTGVVFMGMGEPFDNYDRVMRAVKILTDPRAGVRLKASSVTVSTVGLVPQIERFCKDPANGASLAISLHSVVDEVRDKLIPVNRRYPLEQLSETLRTHFPRSSKPAADEPTGVALDHASSAAAPA 409
BLAST of mRNA_S-ischiensis_contig9.20617.1 vs. uniprot
Match: A0A061QU93_9CHLO (23S rRNA (Adenine2503-C2)-methyltransferase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QU93_9CHLO) HSP 1 Score: 249 bits (637), Expect = 6.980e-75 Identity = 138/279 (49.46%), Postives = 180/279 (64.52%), Query Frame = 1
Query: 250 DSQGKIMLKGLCLDEMERLMDDLGIKRQKALVLAKWMYHRGRLARDVEEARGRAGGERFCLGEKDLAVLGKVATADGAMELEDVRVARDGTRKVLLRLTSGEGAGKAIEAVIIPMMQGRRQVARYSLCVSSQVGCAMNCQFCNTGRMGLMANLQAAQIVEQVVWARRYLESVGDPTPLTGVVFMGMGEPFDNFQRVMRALSIMTDPREGLRLKGSRVTVSTVGLVPEIHRFCSDPTNPANLAVSLHAPTDHLRGQVVPLNQRYPLTQLIPALEHNFPRE 1086
D G +MLKGL + +E G K +AL L +WMY+ R E+A AG G + +AT DG +EL DV A DGTRK++ R++ G AG +EAV+IP+++ + R +LCVSSQ+GCAMNCQFC TGRMGL NL AQIVEQ+V ARRYL SVGD TP+T VVFMGMGEP N V+ A SI P GL + ++++VSTVGLVPE+ RFC + + A LAVSLHA TD +R +VP+N+RYP+ +L+ +L FP +
Sbjct: 91 DKNGLLMLKGLTFEGLEEWCVSKGEKPSRALQLWRWMYYDNMWMRCFEDA---AGSSSSSFGRAFRDKVEPLATVDGGLELADVHEASDGTRKLVFRVSEGPAAGGKVEAVLIPILRSSGRKERITLCVSSQLGCAMNCQFCLTGRMGLGGNLLTAQIVEQLVEARRYLASVGDKTPITNVVFMGMGEPLHNLDAVLAATSIFCHPM-GLHMSHNKISVSTVGLVPEMERFCRESS--AQLAVSLHATTDEVRDWIVPVNRRYPIHELMASLRSLFPSQ 363
BLAST of mRNA_S-ischiensis_contig9.20617.1 vs. uniprot
Match: A0A836CLG8_9STRA (Radical SAM core domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLG8_9STRA) HSP 1 Score: 229 bits (585), Expect = 2.360e-69 Identity = 114/184 (61.96%), Postives = 143/184 (77.72%), Query Frame = 1
Query: 508 ARDGTRKVLLRLTSGEGAGKAIEAVIIPMMQGRRQVARYSLCVSSQVGCAMNCQFCNTGRMGLMANLQAAQIVEQVVWARRYLESVGDPTPLTGVVFMGMGEPFDNFQRVMRALSIMTDPR-EGLRLKGSRVTVSTVGLVPEIHRFCSDPTNPANLAVSLHAPTDHLRGQVVPLNQRYPLTQLI 1056
A+DGT K++ + + G G A+E V+IPM+QG +Q RY++CVSSQVGCAMNCQFC+TGRMGL+ANLQAAQIVEQVV A+R+L +GD TP+TGVVFMGMGEPFDN++ V +A+ +MT+ GLRL RVTVSTVG+VP I +FC DP ANLAVSLHA D R +VP+NQR+ L L+
Sbjct: 3 AQDGTIKLVCKASHGTALGGAVETVVIPMLQGPQQKKRYTVCVSSQVGCAMNCQFCHTGRMGLLANLQAAQIVEQVVIAKRHLNEIGDTTPITGVVFMGMGEPFDNYENVSKAVQVMTEKSGTGLRLSAGRVTVSTVGIVPRIRQFCEDPNMRANLAVSLHATEDTTRDWLVPVNQRHDLETLM 186
BLAST of mRNA_S-ischiensis_contig9.20617.1 vs. uniprot
Match: A0A061S7Y6_9CHLO (23S rRNA (Adenine2503-C2)-methyltransferase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S7Y6_9CHLO) HSP 1 Score: 229 bits (584), Expect = 9.970e-69 Identity = 129/257 (50.19%), Postives = 164/257 (63.81%), Query Frame = 1
Query: 250 DSQGKIMLKGLCLDEMERLMDDLGIKRQKALVLAKWMYHRGRLARDVEEARGRAGGERFCLGEKDLAVLGKVATADGAMELEDVRVARDGTRKVLLRLTSGEGAGKAIEAVIIPMMQGRRQVARYSLCVSSQVGCAMNCQFCNTGRMGLMANLQAAQIVEQVVWARRYLESVGDPTPLTGVVFMGMGEPFDNFQRVMRALSIMTDPREGLRLKGSRVTVSTVGLVPEIHRFCSDPTNPANLAVSLHAPTDHLRGQVV 1020
D G +MLKGL + +E G K +AL L +WMY+ R E+A AG G + +AT DG +EL DV A DGTRK++ R++ G AG +EAV+IP+++ + R +LCVSSQ+GCAMNCQFC TGRMGL NL AQIVEQ+V ARRYL SVGD TP+T VVFMGMGEP N V+ A SI P GL + ++++VSTVGLVPE+ RFC + + A LAVSLHA TD +R +V
Sbjct: 91 DKNGLLMLKGLTFEGLEEWCVSQGEKPSRALQLWRWMYYDNMWMRCFEDA---AGSSSSSFGRAFRDKVEPLATVDGGLELADVHEASDGTRKLVFRVSEGPAAGGKVEAVLIPILRSSGRKERITLCVSSQLGCAMNCQFCLTGRMGLGGNLLTAQIVEQLVEARRYLASVGDKTPITNVVFMGMGEPLHNLDAVLAATSIFCHPM-GLHMSHNKISVSTVGLVPEMERFCRESS--AQLAVSLHATTDEVRDWIV 341
BLAST of mRNA_S-ischiensis_contig9.20617.1 vs. uniprot
Match: A0A250XDL1_9CHLO (Radical SAM core domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XDL1_9CHLO) HSP 1 Score: 224 bits (570), Expect = 6.150e-66 Identity = 126/279 (45.16%), Postives = 171/279 (61.29%), Query Frame = 1
Query: 262 KIMLKGLCLDEMERLMDDLGIKRQKALVLAKWMYHRGRLARDVEEARGRAGGERFCLGEKDLAVLGKVATADGAMELEDVRVARDGTRKVLLRLTSGEGAGKAIEAVIIPMMQGRRQVARYSLCVSSQVGCAMNCQFCNTGRMGLMANLQAAQIVEQVVWARRYLESVGDPTPLTGVVFMGMGEPFDNFQRVMRALSIMTDPREGLRLKGSRVTVSTVGLVPEIHRFCSDPTNPANLAVSLHAPTDHLRGQVVPLNQRYPLTQLIPALEHNFPREAPTR 1098
++ LK + E+E +G ++A+ L +WMY G+ ++E+ G G F G D T G +EL++V A+DGTRK+ +LT G G IE V+IP+++ Q R ++C+S+QVGCAMNCQFC TGRMGL+ NL AQ+VEQ+V A+RYL GD TPLT VVFMGMGEP N + V+ A+ IM P GL + ++TVSTVGLVPEI F S + LAVSLHA TD +R +VP+N+R+ L L+ L FP + R
Sbjct: 23 QLKLKSMTYGELEEWCRSVGESAKRAMQLWRWMYADGQWMSNIEDTVGTTTG--FSQGFVDK--FNSKITVSGGLELKEVVTAKDGTRKMAFKLTEGPAKGGVIETVLIPVVREAGQRCRITICLSTQVGCAMNCQFCYTGRMGLLGNLSTAQVVEQIVHAKRYLAEQGDRTPLTNVVFMGMGEPLHNMEVVLNAIEIMKCPL-GLHMSPGKLTVSTVGLVPEIREFVSRSSK-VQLAVSLHATTDEVRDWIVPVNRRHNLESLVSCLGELFPIDGEDR 295
BLAST of mRNA_S-ischiensis_contig9.20617.1 vs. uniprot
Match: A0A0D2MV18_9CHLO (Ribosomal RNA large subunit methyltransferase N n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MV18_9CHLO) HSP 1 Score: 221 bits (563), Expect = 9.760e-65 Identity = 132/291 (45.36%), Postives = 172/291 (59.11%), Query Frame = 1
Query: 268 MLKGLCLDEMERLMDDLGIKRQKALVLAKWMYHRGRLARDVEEARGRAGG--ERFCLGEKDLAVLGKVATADGAMELEDVRVARDGTRKVLLRLTSGEGAGKAIEAVIIPMMQGRRQVARYSLCVSSQ------------VGCAMNCQFCNTGRMGLMANLQAAQIVEQVVWARRYLESVGDPTPLTGVVFMGMGEPFDNFQRVMRALSIMTDPREGLRLKGSRVTVSTVGLVPEIHRFCSDPTNPANLAVSLHAPTDHLRGQVVPLNQRYPLTQLIPALEHNFPREAPTR 1098
MLK L L E++ + +G R++A L +WMY G E+ G G E+FC + LA L DG + L V A+DGTRK++ LT GEG G ++EAV+IP+M+ R +LCVSSQ VGCAM CQFC TG++GL ANL AAQIVEQ+V ARR GDP P+T +VFMGMGEP N V A M P GL + ++VTVSTVGLV ++ F + A LAVSLHA TD +R +VP+N+R+ LT L+ AL ++PR P +
Sbjct: 1 MLKSLTLPELQEWCESIGEDRRRATQLWRWMYADGNWIGAPEDTSGVQNGFSEKFCEKFRQLATL------DGGVRLTSVARAKDGTRKLVFELTEGEGKGGSVEAVLIPVMREAGSKPRITLCVSSQGKRRWQIKEEGAVGCAMACQFCLTGKLGLAANLSAAQIVEQLVEARRLQAREGDPVPITNIVFMGMGEPLHNLDAVAAATEAMNHPL-GLHMSHNKVTVSTVGLVDKLEEFV-ERCGAAQLAVSLHATTDEVRDWIVPVNRRHDLTSLLAALARHYPRGGPLK 283
BLAST of mRNA_S-ischiensis_contig9.20617.1 vs. uniprot
Match: A0A8J4CAH3_9CHLO (Radical SAM core domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4CAH3_9CHLO) HSP 1 Score: 223 bits (568), Expect = 1.900e-64 Identity = 129/283 (45.58%), Postives = 172/283 (60.78%), Query Frame = 1
Query: 250 DSQGKIMLKGLCLDEMERLMDDLGIKRQKALVLAKWMYHRGRLARDVEEARGRAGGERFCLGEKDLAVLGKVATADGAMELEDVRVARDGTRKVLLRLTSGE------GAGKAIEAVIIPMMQGRRQVARYSLCVSSQVGCAMNCQFCNTGRMGLMANLQAAQIVEQVVWARRYLESVGDPTPLTGVVFMGMGEPFDNFQRVMRALSIMTDPREGLRLKGSRVTVSTVGLVPEIHRFCSDPTNPANLAVSLHAPTDHLRGQVVPLNQRYPLTQLIPALEHNFP 1080
D G++MLK L L E+E +G ++A L +W+Y + R++++A G + F K G A+ +G ++L+ + ARDGTRK++ L GE G +E V+IPM Q RY+ C+S+QVGCAMNCQFC TGRMGL+ANL AQIVEQVV ARRYL P + +VFMGMGEP N+ VM A+ I+ GL L +++ VSTVGLVPE+ +F + T A LAVSLHA TD +R +VP N+RYPL QL+ AL FP
Sbjct: 103 DEAGRLMLKNLTLPELEEWCLSIGEPPKRAKQLYRWLYGNRKWIRNLDQADGDP--QAFSSEFKSKVFSG--ASLEGGLQLQSIHTARDGTRKLVFALLEGEHGSPAGGTHGTVETVLIPMTNRSGQNLRYTACLSTQVGCAMNCQFCYTGRMGLLANLATAQIVEQVVEARRYLAEQSVPIRIANIVFMGMGEPLHNYDAVMAAIEILAT---GLELSRNKIIVSTVGLVPEMRKFIAAGT--AKLAVSLHATTDEVRDWIVPTNRRYPLDQLLGALREAFP 376
BLAST of mRNA_S-ischiensis_contig9.20617.1 vs. uniprot
Match: A0A7S0D7C5_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D7C5_MICPS) HSP 1 Score: 219 bits (559), Expect = 2.420e-63 Identity = 129/282 (45.74%), Postives = 171/282 (60.64%), Query Frame = 1
Query: 271 LKGLCLDEMERLMDDLGIKRQKALVLAKWMYHRGRLARDVEEARGRAGGERFCLGEKDLAVLGKVATADGAMELEDVRVARDGTRKVLLRLTSGEGAGKAIEAVIIPMMQGRRQVARYSLCVSSQVGCAMNCQFCNTGRMGLMANLQAAQIVEQVVWARRYL-----ESVGDPTPLTGVVFMGMGEPFDNFQRVMRALSIMTDPREGLRLKGSRVTVSTVGLVPEIHRFCSDPTNPANLAVSLHAPTDHLRGQVVPLNQRYPLTQLIPALEHNFPREAPTRH 1101
LKG+ +E+E + +G + Q+A L WMY RG+L D E + K LG +AT +G +E+E ++ A DGTRKVL RL +G G +E+VIIP G R ++CVSSQ+GCAMNCQFC T +MGL NL AAQIVEQVV ARR V T VVFMGMGEP N V+ A+ ++TDPR GL ++VTVST GLVPEI R+ + + +LAVSL+A TD +R ++P+N++Y L +L+ L NFPR+ RH
Sbjct: 121 LKGMRFEELESWLVSVGERPQRAAQLFSWMYRRGKLVEDFESMED--------VSRKFRDTLGSIATVEGDLEMESIKTATDGTRKVLYRLKNGGGV---VESVIIPSNTGPD--GRTTVCVSSQLGCAMNCQFCFTAKMGLRKNLTAAQIVEQVVHARRLTGGGRGADVRQREETTNVVFMGMGEPLHNVDAVLTAVDVLTDPR-GLAFSRNKVTVSTSGLVPEIERYLKESSG--SLAVSLNATTDEIRSWIMPINRKYNLERLLGTLRENFPRQGAGRH 386
BLAST of mRNA_S-ischiensis_contig9.20617.1 vs. uniprot
Match: A0A4D9CUA2_9STRA (Radical SAM core domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUA2_9STRA) HSP 1 Score: 217 bits (552), Expect = 3.140e-63 Identity = 122/266 (45.86%), Postives = 166/266 (62.41%), Query Frame = 1
Query: 331 QKALVLAKWMYHRGRLARD--VEEARGRAGGERFCLGEKDLAVLGKVATADGAMELEDVRVARDGTRKVLLRLTSGEGAGKAIEAVIIPMMQGRRQVARYSLCVSSQVGCAMNCQFCNTGRMGLMANLQAAQIVEQVVWARRYLE-------------SVGDPTPLTGVVFMGMGEPFDNFQRVMRALSIMTDPREGLRLKGSRVTVSTVGLVPEIHRFCSDPTNPANLAVSLHAPTDHLRGQVVPLNQRYPLTQ-LIPALEHNFP 1080
QKA + KW+YHR + + E A R CL + L VAT D + L + ++A DGT+K+++++T G G G+A+EAV+IPM++G Q R++LCVSSQ GCAM C FC+TG+MGL+ +L A QIV Q V ARR G+ P+ VVFMGMGEPFDN+ V +ALSI+T+ R L L +++TVSTVGLVP I RF + LAVSLHA TD +R +P+N+RYPL+ L+P+L +FP
Sbjct: 21 QKAFAVFKWLYHRDLMLSNSIFEAAASRTNSAACCLSRRLCQALDAVATLDDGLRLLERKIAGDGTQKLVMQVTDGPGKGQAVEAVLIPMVRGPEQRPRFTLCVSSQSGCAMACAFCHTGKMGLLTSLTAGQIVGQWVLARRLXXXXXXXXXXXXXEGETGNERPILRVVFMGMGEPFDNYAEVTKALSILTEQRGKLLLGPNKITVSTVGLVPFIDRFVEETR--CMLAVSLHATTDEVRSSFMPINRRYPLSSSLLPSLRRHFP 284
BLAST of mRNA_S-ischiensis_contig9.20617.1 vs. uniprot
Match: A0A2K3E2V3_CHLRE (Radical SAM core domain-containing protein n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3E2V3_CHLRE) HSP 1 Score: 219 bits (557), Expect = 4.450e-63 Identity = 132/286 (46.15%), Postives = 175/286 (61.19%), Query Frame = 1
Query: 247 RDSQGKIMLKGLCLDEMERLMDDLGIKRQKALVLAKWMYHRGRLARDVEEARGRAGGERFCLGEKDLAVLGKVATADGAMELEDVRVARDGTRKVLLRLTS----GEG-AGKA---IEAVIIPMMQGRRQVARYSLCVSSQVGCAMNCQFCNTGRMGLMANLQAAQIVEQVVWARRYLESVGDPTPLTGVVFMGMGEPFDNFQRVMRALSIMTDPREGLRLKGSRVTVSTVGLVPEIHRFCSDPTNPANLAVSLHAPTDHLRGQVVPLNQRYPLTQLIPALEHNFP 1080
RD+ G++MLK L L E+E +G ++A L +W+Y + R++++A A F K G A+ G ++L+ V ARDGTRK++ L G+G AG A +E V+IPM + Q RY+ C+S+QVGCAMNCQFC TGRMGL+ NL AQIVEQVV ARRYL P+ +VFMGMGEP N+ VM A+ I+ GL L +++ VSTVGLVPE+ RF + + A LAVSLHA TD +R +VP N+RYPL QL+ AL FP
Sbjct: 91 RDAAGRVMLKNLPLPELEEWCASVGEPPKRAKQLYRWLYGNRKWIRNLDQADSDA--SAFSGAFKAKVASG--ASLAGGLQLQSVHTARDGTRKLVFALVGDWEGGDGPAGSARGTVETVLIPMTNRQGQNLRYTACLSTQVGCAMNCQFCYTGRMGLLGNLSTAQIVEQVVEARRYLAEQEVQIPIANIVFMGMGEPLHNYDAVMSAIEILAT---GLELSRNKIIVSTVGLVPEMRRFIA--SGRAKLAVSLHATTDEVRDWIVPTNRRYPLDQLLGALREAFP 367 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20617.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20617.1 >prot_S-ischiensis_contig9.20617.1 ID=prot_S-ischiensis_contig9.20617.1|Name=mRNA_S-ischiensis_contig9.20617.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=384bp MWAVAAGFLACAGAAGAFIGPLQRPGVARVSYPCARNAWEGGARRPRRCWback to top mRNA from alignment at S-ischiensis_contig9:1983419..1991494- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20617.1 ID=mRNA_S-ischiensis_contig9.20617.1|Name=mRNA_S-ischiensis_contig9.20617.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=8076bp|location=Sequence derived from alignment at S-ischiensis_contig9:1983419..1991494- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:1983419..1991494- >mRNA_S-ischiensis_contig9.20617.1 ID=mRNA_S-ischiensis_contig9.20617.1|Name=mRNA_S-ischiensis_contig9.20617.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2304bp|location=Sequence derived from alignment at S-ischiensis_contig9:1983419..1991494- (Schizocladia ischiensis KU_0333)back to top |