mRNA_S-ischiensis_contig9.20616.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20616.1
Unique NamemRNA_S-ischiensis_contig9.20616.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20616.1 vs. uniprot
Match: D8LLN5_ECTSI (Radical SAM core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLN5_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.380e-18
Identity = 49/80 (61.25%), Postives = 58/80 (72.50%), Query Frame = 3 
Query:    3 RMLSLEYTLLQGVNDSLGDAGRLAELLAGVHGVINLIGFNPHPGTPFAPSSPEAARAFQEVRSSSGGISEQINLFMDGTG 242
            R+L++EYTLL GVNDSLGDAGRLAE L GV  V+NLI FN H GTPF+PSSPEAA AF+   ++ G    Q+  F D  G
Sbjct:  484 RILAVEYTLLGGVNDSLGDAGRLAEWLEGVACVVNLITFNAHAGTPFSPSSPEAAEAFRRALAARG----QLCTFRDSRG 559
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BLAST of mRNA_S-ischiensis_contig9.20616.1 vs. uniprot
Match: A0A661KYT2_9DELT (Dual-specificity RNA methyltransferase RlmN n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661KYT2_9DELT)

HSP 1 Score: 70.1 bits (170), Expect = 8.360e-12
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 3 
Query:    3 RMLSLEYTLLQGVNDSLGDAGRLAELLAGVHGVINLIGFNPHPGTPFAPSSPEAARAFQEV 185
            RM++ EY L++G+NDSL DA RL +LL G+   +NLI FNPHPG  F PS  E    FQEV
Sbjct:  260 RMITFEYILIKGINDSLEDARRLVKLLKGLRAKVNLIPFNPHPGVDFRPSPMERILQFQEV 320
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BLAST of mRNA_S-ischiensis_contig9.20616.1 vs. uniprot
Match: A0A653AB57_9DELT (Dual-specificity RNA methyltransferase RlmN n=2 Tax=Desulfatiglans TaxID=1549126 RepID=A0A653AB57_9DELT)

HSP 1 Score: 70.1 bits (170), Expect = 8.420e-12
Identity = 36/61 (59.02%), Postives = 42/61 (68.85%), Query Frame = 3 
Query:    3 RMLSLEYTLLQGVNDSLGDAGRLAELLAGVHGVINLIGFNPHPGTPFAPSSPEAARAFQEV 185
            RM++ EY L++GVNDS  DA RLA LL G+   INLI  NPHP +PF PSS E    FQEV
Sbjct:  250 RMITFEYILMEGVNDSDRDAERLASLLRGIRAKINLIPLNPHPESPFKPSSMERILQFQEV 310
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BLAST of mRNA_S-ischiensis_contig9.20616.1 vs. uniprot
Match: T0YEY8_9ZZZZ (Radical SAM enzyme, Cfr family protein (Fragment) n=1 Tax=mine drainage metagenome TaxID=410659 RepID=T0YEY8_9ZZZZ)

HSP 1 Score: 67.4 bits (163), Expect = 1.010e-11
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 3 
Query:    3 RMLSLEYTLLQGVNDSLGDAGRLAELLAGVHGVINLIGFNPHPGTPFAPSSPEAARAFQEVRSSSG 200
            R ++ EY +L+GVNDS  DA  L  L+AG+   +NLI FNP PG+ FAPS+P A R F E+  ++G
Sbjct:   73 RRITFEYVMLRGVNDSEADARELVRLIAGLPAKVNLIPFNPWPGSQFAPSTPGAIRRFAEIVMNAG 138
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BLAST of mRNA_S-ischiensis_contig9.20616.1 vs. uniprot
Match: A0A3M7L2M4_AUXPR (Radical SAM core domain-containing protein (Fragment) n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A3M7L2M4_AUXPR)

HSP 1 Score: 69.3 bits (168), Expect = 1.750e-11
Identity = 36/61 (59.02%), Postives = 43/61 (70.49%), Query Frame = 3 
Query:    3 RMLSLEYTLLQGVNDSLGDAGRLAELLAGVHGVINLIGFNPHPGTPFAPSSPEAARAFQEV 185
            R + ++Y LL+GVND   DA RLA+LLA V   +NLIGFNPHPGT FAPS   A +AF  V
Sbjct:  309 RHVLVQYVLLRGVNDGEADAYRLADLLARVRCKVNLIGFNPHPGTRFAPSGERATQAFLAV 369
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BLAST of mRNA_S-ischiensis_contig9.20616.1 vs. uniprot
Match: A0A8J6MBA1_9PROT (Dual-specificity RNA methyltransferase RlmN n=1 Tax=Rubritepida sp. TaxID=2497596 RepID=A0A8J6MBA1_9PROT)

HSP 1 Score: 68.9 bits (167), Expect = 2.410e-11
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:    3 RMLSLEYTLLQGVNDSLGDAGRLAELLAGVHGVINLIGFNPHPGTPFAPSSPEAARAFQEVRSSSG 200
            R ++ EY +L+GVNDS+ +A  L  LL G+   +NLI FNP PG+P+  S+PEA R F EV +++G
Sbjct:  298 RRITFEYVMLRGVNDSIAEAHELVHLLEGIPAKVNLIPFNPWPGSPYKTSTPEALRGFAEVLNAAG 363
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BLAST of mRNA_S-ischiensis_contig9.20616.1 vs. uniprot
Match: A0A1J5HZT5_9DELT (Dual-specificity RNA methyltransferase RlmN n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A1J5HZT5_9DELT)

HSP 1 Score: 67.0 bits (162), Expect = 1.050e-10
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:    3 RMLSLEYTLLQGVNDSLGDAGRLAELLAGVHGVINLIGFNPHPGTPFAPSSPEAARAFQEV 185
            RML+ EY L+ GVNDS  DA +LA LL G+   +NLI FN  PG P+   +PEA  AFQ+V
Sbjct:  253 RMLTFEYILMAGVNDSPADAEKLARLLGGIRCKLNLIAFNEFPGAPYRTPTPEAVSAFQQV 313
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BLAST of mRNA_S-ischiensis_contig9.20616.1 vs. uniprot
Match: A0A451C738_9GAMM (Dual-specificity RNA methyltransferase RlmN n=1 Tax=Candidatus Kentron sp. G TaxID=2126341 RepID=A0A451C738_9GAMM)

HSP 1 Score: 67.0 bits (162), Expect = 1.090e-10
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 3 
Query:    9 LSLEYTLLQGVNDSLGDAGRLAELLAGVHGVINLIGFNPHPGTPFAPSSPEAARAFQEV 185
            ++ EY LL GVND  GDAGRLA LL GV   +NLI FNP PGTP+    P A   F++V
Sbjct:  268 ITFEYVLLGGVNDGPGDAGRLARLLGGVPAKVNLIPFNPFPGTPYRRPLPAAVETFRDV 326
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BLAST of mRNA_S-ischiensis_contig9.20616.1 vs. uniprot
Match: A0A845V0M6_9GAMM (Dual-specificity RNA methyltransferase RlmN n=1 Tax=Wenzhouxiangella limi TaxID=2707351 RepID=A0A845V0M6_9GAMM)

HSP 1 Score: 67.0 bits (162), Expect = 1.110e-10
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 3 
Query:    3 RMLSLEYTLLQGVNDSLGDAGRLAELLAGVHGVINLIGFNPHPGTPFAPSSPEAARAFQEVRSSSG 200
            R ++ EYT++ GVNDS  +A  L  LL G+   +NLI FNP PGTPF PSSP+A   FQ+V  ++G
Sbjct:  262 RSITFEYTMMAGVNDSRREARGLVRLLNGLPCKLNLIPFNPFPGTPFLPSSPDAIYEFQKVTRAAG 327
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BLAST of mRNA_S-ischiensis_contig9.20616.1 vs. uniprot
Match: UPI000E0E0879 (23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN n=1 Tax=Acidibrevibacterium fodinaquatile TaxID=1969806 RepID=UPI000E0E0879)

HSP 1 Score: 67.0 bits (162), Expect = 1.140e-10
Identity = 33/66 (50.00%), Postives = 44/66 (66.67%), Query Frame = 3 
Query:    3 RMLSLEYTLLQGVNDSLGDAGRLAELLAGVHGVINLIGFNPHPGTPFAPSSPEAARAFQEVRSSSG 200
            R ++ EY +L+GVNDS  DA  L  L+AG+   +NLI FNP PG+ FAPS+P A R F E+   +G
Sbjct:  295 RRITFEYVMLRGVNDSEADARELVRLIAGLPAKVNLIPFNPWPGSAFAPSTPVAIRRFAEIVMDAG 360
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLN5_ECTSI1.380e-1861.25Radical SAM core domain-containing protein n=2 Tax... [more]
A0A661KYT2_9DELT8.360e-1255.74Dual-specificity RNA methyltransferase RlmN n=1 Ta... [more]
A0A653AB57_9DELT8.420e-1259.02Dual-specificity RNA methyltransferase RlmN n=2 Ta... [more]
T0YEY8_9ZZZZ1.010e-1150.00Radical SAM enzyme, Cfr family protein (Fragment) ... [more]
A0A3M7L2M4_AUXPR1.750e-1159.02Radical SAM core domain-containing protein (Fragme... [more]
A0A8J6MBA1_9PROT2.410e-1148.48Dual-specificity RNA methyltransferase RlmN n=1 Ta... [more]
A0A1J5HZT5_9DELT1.050e-1054.10Dual-specificity RNA methyltransferase RlmN n=2 Ta... [more]
A0A451C738_9GAMM1.090e-1055.93Dual-specificity RNA methyltransferase RlmN n=1 Ta... [more]
A0A845V0M6_9GAMM1.110e-1051.52Dual-specificity RNA methyltransferase RlmN n=1 Ta... [more]
UPI000E0E08791.140e-1050.0023S rRNA (adenine(2503)-C(2))-methyltransferase Rl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1981648..1983090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.7
Seed ortholog evalue7.3e-16
Seed eggNOG ortholog2880.D8LLN5
KEGG koko:K06941
EggNOG free text desc.Radical SAM superfamily
EggNOG OGs2QV91@2759,COG0820@1
EC2.1.1.192
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size342
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20616.1prot_S-ischiensis_contig9.20616.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1981718..1983085 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817389.9465945-UTR-S-ischiensis_contig9:1981647..19817171622817389.9465945-UTR-S-ischiensis_contig9:1981647..1981717Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1981648..1981717 -
1695741077.7498064-UTR-S-ischiensis_contig9:1981647..19817171695741077.7498064-UTR-S-ischiensis_contig9:1981647..1981717Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1981648..1981717 -
1622817389.9942255-UTR-S-ischiensis_contig9:1983085..19830901622817389.9942255-UTR-S-ischiensis_contig9:1983085..1983090Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1983086..1983090 -
1695741077.7872984-UTR-S-ischiensis_contig9:1983085..19830901695741077.7872984-UTR-S-ischiensis_contig9:1983085..1983090Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1983086..1983090 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817389.9634597-CDS-S-ischiensis_contig9:1981717..19819511622817389.9634597-CDS-S-ischiensis_contig9:1981717..1981951Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1981718..1981951 -
1695741077.7625904-CDS-S-ischiensis_contig9:1981717..19819511695741077.7625904-CDS-S-ischiensis_contig9:1981717..1981951Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1981718..1981951 -
1622817389.977777-CDS-S-ischiensis_contig9:1983052..19830851622817389.977777-CDS-S-ischiensis_contig9:1983052..1983085Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1983053..1983085 -
1695741077.7754114-CDS-S-ischiensis_contig9:1983052..19830851695741077.7754114-CDS-S-ischiensis_contig9:1983052..1983085Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1983053..1983085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20616.1

>prot_S-ischiensis_contig9.20616.1 ID=prot_S-ischiensis_contig9.20616.1|Name=mRNA_S-ischiensis_contig9.20616.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=89bp
MLSLEYTLLQGVNDSLGDAGRLAELLAGVHGVINLIGFNPHPGTPFAPSS
PEAARAFQEVRSSSGGISEQINLFMDGTGLHLSIVDIR*
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mRNA from alignment at S-ischiensis_contig9:1981648..1983090-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20616.1 ID=mRNA_S-ischiensis_contig9.20616.1|Name=mRNA_S-ischiensis_contig9.20616.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1443bp|location=Sequence derived from alignment at S-ischiensis_contig9:1981648..1983090- (Schizocladia ischiensis KU_0333)
GGCGGATGCTGTCGCTGGAGTACACGCTGTTGCAGGGGGTGGGTGCAGTA
TGGCGAGTCTTGTGTACAACGTGGTATATATGTTTCCTGACTATTTCCAA
GTTCAAGCCAATGAGTACATATATAGAGCTATATTTCCAAGTGCTAAATA
GGTACTGCTGTCGGAGGGCGAACCCGAAGTTTTTTTTGCTCGGGGCTGTC
GGCACAGCACCCAAGATTCTGTCGCAAGACGAGCCAGTGAGTCCGTACAC
TGGTATGTATATATGCGGACGACATATTCCGCACACCATTTACCTACTCG
GAAGTACCCTGCTTCTTACCGCTTGGCGTCACTTTCAAGTGCATGACATG
CCTACGGACGAAGCGAGGTTGCGCCCATGTCACCAACGACCTCGACACAA
GGACCCCGCTCTTCTCGCAAAGCAGGAGGCGGTCGGCTCTTGCCGTACGG
TACGATTTAACCCTTTTACCCCTGGGGTCCGTATAGTCACAGGATTTTAG
TGTGTATGTCCAATGTACCAGGGGTAAAAGGGTTAAGCTTAACCACTCCG
TTGTCTCGACGATGCGTGTACCTCTGCTAGGTGAACGACTCGCTGGGGGA
TGCAGCGTGACTGGCACGATTTAACCCCTCTGTTGCCTCGACGATGCGTG
TACCTCTGCTGCAGTAGGTTAATGACTCGCCGGGGCACAATTTAACCCCT
CTATTGTCTCGACGATGCGTATACCTCTGCTACGGTAGGTTAATGATTCG
CCGGGGAACCATTTATCCCCGCCATTGTCTCGGCGATGTGTGCACTGTAC
CTCTGCTAGGTTAGTGACTCGCCGGGGGACGCGGCGCGCCTGGCACGATT
TAGCCTCTCCGTTGTCTGGACGATGTGTGTGCCTCTGCTAGGTTAATGAC
TCTTTAACCACTCCATTGTCTCGACGATGTGTGTGCTGTACCTCTGCTAG
GTTAATAGCTCACCGGGGGACGCGCGTGACTGGCACGATTGAACCACTCC
GTTGTCTCGACGATGTGTGTACCTCTGCTAGGTTAATGACTCTTTAATCA
CTCCGTTGTCTCGACGATGTGTGTACCTCGGCTAGGTTAATGACTCTTGA
ACCACTCCGTTGTCTCGACGATGTGTGTGCCTCTGCTAGGTCAATGACTC
GCTGGGGGACGCGGGGAGACTGGCGGAGCTCCTGGCAGGCGTTCACGGGG
TGATCAATCTCATCGGATTTAACCCGCACCCAGGGACGCCGTTCGCCCCC
TCTTCGCCCGAGGCTGCCCGGGCGTTCCAGGAGGTGAGGAGCAGCAGTGG
TGGAATATCTGAGCAAATCAACCTATTCATGGACGGCACTGGTCTACATC
TATCGATAGTCGATATTCGATAGTTTCACCCACGTTTAATGCAAGTACTT
CGAAGTAGTTTGTAGCGCCACCCACAAAATCAGTCGAGCCCGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1981648..1983090-

>mRNA_S-ischiensis_contig9.20616.1 ID=mRNA_S-ischiensis_contig9.20616.1|Name=mRNA_S-ischiensis_contig9.20616.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=534bp|location=Sequence derived from alignment at S-ischiensis_contig9:1981648..1983090- (Schizocladia ischiensis KU_0333)
ATGCTGTCGCTGGAGTACACGCTGTTGCAGGGGATGCTGTCGCTGGAGTA
CACGCTGTTGCAGGGGGTCAATGACTCGCTGGGGGACGCGGGGAGACTGG
CGGAGCTCCTGGCAGGCGTTCACGGGGTGATCAATCTCATCGGATTTAAC
CCGCACCCAGGGACGCCGTTCGCCCCCTCTTCGCCCGAGGCTGCCCGGGC
GTTCCAGGAGGTGAGGAGCAGCAGTGGTGGAATATCTGAGCAAATCAACC
TATTCATGGACGGCACTGGTCTACATCTATCGATAGTCGATATTCGATAG
GTCAATGACTCGCTGGGGGACGCGGGGAGACTGGCGGAGCTCCTGGCAGG
CGTTCACGGGGTGATCAATCTCATCGGATTTAACCCGCACCCAGGGACGC
CGTTCGCCCCCTCTTCGCCCGAGGCTGCCCGGGCGTTCCAGGAGGTGAGG
AGCAGCAGTGGTGGAATATCTGAGCAAATCAACCTATTCATGGACGGCAC
TGGTCTACATCTATCGATAGTCGATATTCGATAG
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