mRNA_S-ischiensis_contig9.20599.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20599.1
Unique NamemRNA_S-ischiensis_contig9.20599.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1763802..1764552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size752
Cds size393
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.186218-UTR-S-ischiensis_contig9:1763801..17641591622817372.186218-UTR-S-ischiensis_contig9:1763801..1764159Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1763802..1764159 +
1695741063.7029235-UTR-S-ischiensis_contig9:1763801..17641591695741063.7029235-UTR-S-ischiensis_contig9:1763801..1764159Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1763802..1764159 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817372.1978376-CDS-S-ischiensis_contig9:1764159..17645521622817372.1978376-CDS-S-ischiensis_contig9:1764159..1764552Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1764160..1764552 +
1695741063.714661-CDS-S-ischiensis_contig9:1764159..17645521695741063.714661-CDS-S-ischiensis_contig9:1764159..1764552Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1764160..1764552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20599.1prot_S-ischiensis_contig9.20599.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1764160..1764552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20599.1

>prot_S-ischiensis_contig9.20599.1 ID=prot_S-ischiensis_contig9.20599.1|Name=mRNA_S-ischiensis_contig9.20599.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=131bp
MVEYVVYSSVRTLHIPGRCMTRMPHLHSGSLEHQWHIMYFGSTLKIRSRC
ARKYPYNHLKTPACSPADRQLGCGRACTHALVLSANMSPQLLSLLSGPAA
AMPSRRTSTLCPCACMCLVGKDAAAAALLSG
back to top

mRNA from alignment at S-ischiensis_contig9:1763802..1764552+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20599.1 ID=mRNA_S-ischiensis_contig9.20599.1|Name=mRNA_S-ischiensis_contig9.20599.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=751bp|location=Sequence derived from alignment at S-ischiensis_contig9:1763802..1764552+ (Schizocladia ischiensis KU_0333)
TACGTGTGTGCTCCCCGGGGGGGCCGTGTGGCAGGCCACAGTAATGTAGC
GCACAGTACTACTCCCAGGAAGCAATACTATATGTTGGTACTGTACCAAC
ACATAGAGTCACAGGTAACAGAGGTATCGCCTTGTGAGCCGAGTAAGGCT
TGGTCCGCAAAGTGCTATAAACGGAATCTGTGCGCGCAACTGAGCTCTAC
AGGCTGAGTAGTCGCGTTTTCAGGCCTCCGTGCGCCCTCCACGAGTTGCA
GCGAGCGCTGCCAAGTAGTTGTGGGGGTTAGAGCGCTGCCGCGTACATAC
TAGTAGTAAGTACTTCGAAGTCTTCAAAGTACTTTGAAGTACAGCAGCTC
CCATTGGCATGGTAGAGTATGTAGTGTACAGCAGTGTACGTACACTGCAC
ATCCCAGGGCGCTGTATGACTCGGATGCCGCACTTACACTCAGGCTCCCT
GGAGCACCAGTGGCATATTATGTACTTTGGAAGTACTTTGAAGATACGAA
GTAGGTGTGCTCGGAAGTACCCCTACAACCACTTGAAAACCCCGGCATGC
AGCCCCGCCGACCGGCAGTTGGGGTGTGGGCGCGCGTGCACGCATGCATT
AGTCTTGTCAGCAAACATGTCGCCGCAGCTGCTCAGCTTGCTGAGTGGAC
CTGCAGCTGCAATGCCGTCACGTCGCACTTCGACTCTGTGCCCATGTGCG
TGCATGTGTCTTGTTGGCAAAGATGCTGCCGCAGCAGCTTTGCTGTCTGG
A
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:1763802..1764552+

>mRNA_S-ischiensis_contig9.20599.1 ID=mRNA_S-ischiensis_contig9.20599.1|Name=mRNA_S-ischiensis_contig9.20599.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=786bp|location=Sequence derived from alignment at S-ischiensis_contig9:1763802..1764552+ (Schizocladia ischiensis KU_0333)
ATGGTAGAGTATGTAGTGTACAGCAGTGTACGTACACTGCACATCCCAGG
GCGCTGTATGACTCGGATGCCGCACTTACACTCAGGCTCCCTGGAGCACC
AGTGGCATATTATGTACTTTGGAAGTACTTTGAAGATACGAAGTAGGTGT
GCTCGGAAGTACCCCTACAACCACTTGAAAACCCCGGCATGCAGCCCCGC
CGACCGGCAGTTGGGGTGTGGGCGCGCGTGCACGCATGCATTAGTCTTGT
CAGCAAACATGTCGCCGCAGCTGCTCAGCTTGCTGAGTGGACCTGCAGCT
GCAATGCCGTCACGTCGCACTTCGACTCTGTGCCCATGTGCGTGCATGTG
TCTTGTTGGCAAAGATGCTGCCGCAGCAGCTTTGCTGTCTGGAATGGTAG
AGTATGTAGTGTACAGCAGTGTACGTACACTGCACATCCCAGGGCGCTGT
ATGACTCGGATGCCGCACTTACACTCAGGCTCCCTGGAGCACCAGTGGCA
TATTATGTACTTTGGAAGTACTTTGAAGATACGAAGTAGGTGTGCTCGGA
AGTACCCCTACAACCACTTGAAAACCCCGGCATGCAGCCCCGCCGACCGG
CAGTTGGGGTGTGGGCGCGCGTGCACGCATGCATTAGTCTTGTCAGCAAA
CATGTCGCCGCAGCTGCTCAGCTTGCTGAGTGGACCTGCAGCTGCAATGC
CGTCACGTCGCACTTCGACTCTGTGCCCATGTGCGTGCATGTGTCTTGTT
GGCAAAGATGCTGCCGCAGCAGCTTTGCTGTCTGGA
back to top