mRNA_S-ischiensis_contig9.20597.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20597.1
Unique NamemRNA_S-ischiensis_contig9.20597.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1750398..1751499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size338
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817366.987357-CDS-S-ischiensis_contig9:1750397..17506881622817366.987357-CDS-S-ischiensis_contig9:1750397..1750688Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1750398..1750688 +
1695741060.6446753-CDS-S-ischiensis_contig9:1750397..17506881695741060.6446753-CDS-S-ischiensis_contig9:1750397..1750688Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1750398..1750688 +
1622817366.9991856-CDS-S-ischiensis_contig9:1751453..17514981622817366.9991856-CDS-S-ischiensis_contig9:1751453..1751498Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1751454..1751498 +
1695741060.656354-CDS-S-ischiensis_contig9:1751453..17514981695741060.656354-CDS-S-ischiensis_contig9:1751453..1751498Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1751454..1751498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20597.1prot_S-ischiensis_contig9.20597.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1750398..1751498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20597.1

>prot_S-ischiensis_contig9.20597.1 ID=prot_S-ischiensis_contig9.20597.1|Name=mRNA_S-ischiensis_contig9.20597.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=112bp
RRYASAAAGAAHAHDRMVRWLVRAAAGVACCLACATSASPGAERLGFAAP
AAPAPRCCWRPNRLTMAAGKKKGPTPFLKKGKGKKNRKVEVAAPLKENPR
EAQKERVSRLNW
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mRNA from alignment at S-ischiensis_contig9:1750398..1751499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20597.1 ID=mRNA_S-ischiensis_contig9.20597.1|Name=mRNA_S-ischiensis_contig9.20597.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1102bp|location=Sequence derived from alignment at S-ischiensis_contig9:1750398..1751499+ (Schizocladia ischiensis KU_0333)
CGGAGGTACGCCTCTGCTGCAGCTGGAGCAGCTCACGCTCACGACAGGAT
GGTAAGGTGGCTCGTGCGAGCCGCAGCCGGTGTAGCATGCTGCTTGGCAT
GCGCGACTTCGGCGTCTCCGGGGGCCGAGCGACTGGGTTTTGCCGCCCCG
GCAGCGCCCGCCCCCCGGTGTTGCTGGAGACCTAACAGACTGACCATGGC
CGCGGGAAAGAAGAAGGGACCCACCCCTTTCTTAAAGAAAGGGAAGGGCA
AGAAGAACCGCAAGGTGGAAGTTGCGGCGCCTCTCAAGGAGGTGCGTGGG
GGCTGCCTTGAACTGTTGATGTACTGTGCCATGTGTGTCATGGTGTCACG
GGGCTGCCCTGTGGGCTAAGAACAACCGGTATGCGATCCAATGAATGCAT
TGCACCGTCCGCCATGAAAACATGCCGAGGTGCATGAAACCCTACAATAG
CCCGGCCGTTCTTGGGTGCAGCGCAAGCCCCCAATAGCTGCTGGGTTGGT
GGCAACCTGCAGTCAGAACCACACAGAGCCCTATACAAGCTCTGAAAAGC
GTCCGAGACAATTATCCCACAAACAAAGCAACCCGTCGCAAAACCCATGG
GTATGCCTCCAATTACTTGCTGCCAATTCTATTCGGGCCGGCCCAATGGT
GCCCCAACGACAACAGCTGCAACAATGGGCTTTACCCAACTTGTACTTGG
TACAGGCGCCAACACGACCCCCCCCCCTCCCGGTGCTGACCTTGTCAGCG
CTGAGGGAGAGGGAGCCTTTGTCTTATGCACCGCCGCCGCTGGCACCACA
GCCACTCTCACGGCCACTGCCACTGCCCTTCGCCCCGCCCCCCCCCTTCT
TCCCCCCCCCCTTCCCCCCCCCCTCCTTATTCTTAGTTCCTTGATTTGAT
AATCACTAATATAGGAACACTCAATGTTAAATGGGACAACTACTAATACG
AGCACGGTCAATCTCACACACGGGCGATTTAACCTCGTTACAATGTATAT
GAATCGCTGCCCTGACCGCCATCGCCACCGCCCTCCCCCGCCGTTCCCAC
CACCAGAACCCTCGCGAGGCGCAGAAGGAGCGTGTGTCGAGGCTGAACTG
GG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1750398..1751499+

>mRNA_S-ischiensis_contig9.20597.1 ID=mRNA_S-ischiensis_contig9.20597.1|Name=mRNA_S-ischiensis_contig9.20597.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=672bp|location=Sequence derived from alignment at S-ischiensis_contig9:1750398..1751499+ (Schizocladia ischiensis KU_0333)
CGGAGGTACGCCTCTGCTGCAGCTGGAGCAGCTCACGCTCACGACAGGAT
GGTAAGGTGGCTCGTGCGAGCCGCAGCCGGTGTAGCATGCTGCTTGGCAT
GCGCGACTTCGGCGTCTCCGGGGGCCGAGCGACTGGGTTTTGCCGCCCCG
GCAGCGCCCGCCCCCCGGTGTTGCTGGAGACCTAACAGACTGACCATGGC
CGCGGGAAAGAAGAAGGGACCCACCCCTTTCTTAAAGAAAGGGAAGGGCA
AGAAGAACCGCAAGGTGGAAGTTGCGGCGCCTCTCAAGGAGCGGAGGTAC
GCCTCTGCTGCAGCTGGAGCAGCTCACGCTCACGACAGGATGGTAAGGTG
GCTCGTGCGAGCCGCAGCCGGTGTAGCATGCTGCTTGGCATGCGCGACTT
CGGCGTCTCCGGGGGCCGAGCGACTGGGTTTTGCCGCCCCGGCAGCGCCC
GCCCCCCGGTGTTGCTGGAGACCTAACAGACTGACCATGGCCGCGGGAAA
GAAGAAGGGACCCACCCCTTTCTTAAAGAAAGGGAAGGGCAAGAAGAACC
GCAAGGTGGAAGTTGCGGCGCCTCTCAAGGAGAACCCTCGCGAGGCGCAG
AAGGAGCGTGTGTCGAGGCTGAACTGGAACCCTCGCGAGGCGCAGAAGGA
GCGTGTGTCGAGGCTGAACTGG
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