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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Exons | 2 |
| Model size | 577 |
| Cds size | 372 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817366.9234834-CDS-S-ischiensis_contig9:1748488..1748587 | 1622817366.9234834-CDS-S-ischiensis_contig9:1748488..1748587 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 1748489..1748587 - |
| 1695741060.6136174-CDS-S-ischiensis_contig9:1748488..1748587 | 1695741060.6136174-CDS-S-ischiensis_contig9:1748488..1748587 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 1748489..1748587 - |
| 1622817366.9379666-CDS-S-ischiensis_contig9:1749804..1750077 | 1622817366.9379666-CDS-S-ischiensis_contig9:1749804..1750077 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 1749805..1750077 - |
| 1695741060.6234648-CDS-S-ischiensis_contig9:1749804..1750077 | 1695741060.6234648-CDS-S-ischiensis_contig9:1749804..1750077 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 1749805..1750077 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817366.9496057-UTR-S-ischiensis_contig9:1750077..1750280 | 1622817366.9496057-UTR-S-ischiensis_contig9:1750077..1750280 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 1750078..1750280 - |
| 1695741060.633353-UTR-S-ischiensis_contig9:1750077..1750280 | 1695741060.633353-UTR-S-ischiensis_contig9:1750077..1750280 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 1750078..1750280 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20596.1 >prot_S-ischiensis_contig9.20596.1 ID=prot_S-ischiensis_contig9.20596.1|Name=mRNA_S-ischiensis_contig9.20596.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=124bp
MPGFGMRRRRASPEAFCILLAAPFCGGWVVPLGPVRHGQGVAGGASSALG
PRPAGDVSPRAKRLHRTTLGMSQEADGNWGATAARDGRGDEAEEPLPFLP
SDFDGEEWGPETGEDDDEELMGDE back to topmRNA from alignment at S-ischiensis_contig9:1748489..1750280- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig9.20596.1 ID=mRNA_S-ischiensis_contig9.20596.1|Name=mRNA_S-ischiensis_contig9.20596.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1792bp|location=Sequence derived from alignment at S-ischiensis_contig9:1748489..1750280- (Schizocladia ischiensis KU_0333)
TTGCGGCCGCGGCGAGGCTGCTGGTTTCGTCGTGTGAGGCGGCAAGCTAC
AGCCTTTGTGCGGCCCAGACTCCTCTCGAGAAGTCCTTTCCAGGTGTAGC
ACGGGATCCGGCCAGGGGAGGCCCACTGTCTCGAAGACCCGCCCGAGACG
AGCACTTTAAAAAAGGACCAGGTTGAACCGCAATTGAAGGGCAAGCACGC
CGGATGCCAGGCTTTGGGATGCGGCGGAGACGGGCTTCTCCCGAGGCCTT
CTGCATCCTCCTCGCAGCGCCATTTTGCGGCGGATGGGTGGTACCGCTGG
GACCTGTGAGGCATGGTCAGGGCGTGGCCGGTGGTGCATCGTCCGCGCTT
GGCCCCCGCCCGGCCGGGGACGTCAGCCCCCGAGCGAAACGCCTCCACAG
GACGACTCTGGGCATGAGCCAGGAAGCAGACGGGAACTGGGGTGCAACCG
CTGCAAGAGATGGCCGTGGCGATGAGGTGAGCATCAGGGAGCTGGGGGCC
TCCAGTGATGGAATATCGATCAGTAGATAGCTATCGCGCTCGACTGACTT
TGTGGGCGGCGTTACAAACTACTTGGATTTAGTGCGGTTCACTATTGAGT
ATCGACTATCGATAGATATATCGATCAGTACTGTCCAAAAAAGGTTGATT
TGCTTAGATATTCCATCACTGGGGGCCTCGATGTGCTGGCCGTTGGGCGA
AGACAACACTGCTACTTACTTTTCCCCGGCCCCTCTCCTTCTACACCATA
CTCCCCTTCAGCACAGCGTCCCTCATACGACACGGTACAACTGCTGAAGA
TGTTTTTTTTGTTAAGCTAGGCGCATGCTGCTGGTTGGTTTTTGTTCGTT
TCCACGCCGCGCTCGCTCGCACGCCAGTGGGTGTCGGACAAACTTCAACT
GCAGTACTGTGCAGTGCACAGAGAGGGTTTGTTTGACCGCGCAGCTCCCC
TGCAGATTGCCTTTCCTGGTCGAGTGCCACACAACACTATCTGCTCCCAG
GGCTGCAATAGGGCCTGTGACCTTACCTGCTAGGCCCTTTGGGAGGGGGG
GGCTGTGTAAAGCTGTGTACACTTCTGTACAGTCCACACATCTGTGCGCT
GTGGGTCCGGCTCCTGCCGTGTGTCTCATTCACGTAGGCCAGACCCAGCC
ACGTATAAACAGTCCGTCTGCAGCTACTGCAGTATTCCGGCATGAACACT
GGGGTGCCCCCGGGGGCTAAGTATTATCGTGTCGATGTGCCGCGCTACGC
ACCGTGGCGGAAACTCGTGGGGGAGGGGGGAGTCCACTGGCGGGGGGCAG
AGGGTGACGGCCTCCTTGCGTGGCCTTGGTGAGTTGTCTCGTCGAGTCTC
TCTGCTCAGCAGGGAGGGCATAACTTAGCGGCCTACGTGCGTGCCTGCAT
ACATGGCGCTCTTGTCGTTCGTTGTGTCATTTCTGTGGGTGTCTGCCTTC
ATGCCTCCCTCCCTCCCTCCCTGCCTCCCTCCCTGCCACCTCTCCCTCCC
TCTCTCCCACCCACCTCTCTTTGCTGCCCCCCCCCCTCTCTCAAAACCGT
TTCTCTCTTCCCCTTGTCCTTGTACCCCTCCCTCCCTCCTCCCTCCCTCC
CACCTCCCCTTCCTGCCCCCCCCCCTCTCTCCAAACCGTTTCTCTCTTCC
CCTTGTCCTTATATCCCCCCGCCCCCCCCGCCCCCCTCCTCAGGCCGAAG
AACCTTTACCTTTCCTGCCCAGCGACTTCGACGGCGAGGAGTGGGGGCCA
GAGACGGGGGAGGACGACGACGAAGAGCTCATGGGTGACGAG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig9:1748489..1750280- >mRNA_S-ischiensis_contig9.20596.1 ID=mRNA_S-ischiensis_contig9.20596.1|Name=mRNA_S-ischiensis_contig9.20596.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=744bp|location=Sequence derived from alignment at S-ischiensis_contig9:1748489..1750280- (Schizocladia ischiensis KU_0333)
ATGCCAGGCTTTGGGATGCGGCGGAGACGGGCTTCTCCCGAGGCCTTCTG
CATCCTCCTCGCAGCGCCATTTTGCGGCGGATGGGTGGTACCGCTGGGAC
CTGTGAGGCATGGTCAGGGCGTGGCCGGTGGTGCATCGTCCGCGCTTGGC
CCCCGCCCGGCCGGGGACGTCAGCCCCCGAGCGAAACGCCTCCACAGGAC
GACTCTGGGCATGAGCCAGGAAGCAGACGGGAACTGGGGTGCAACCGCTG
CAAGAGATGGCCGTGGCGATGAGATGCCAGGCTTTGGGATGCGGCGGAGA
CGGGCTTCTCCCGAGGCCTTCTGCATCCTCCTCGCAGCGCCATTTTGCGG
CGGATGGGTGGTACCGCTGGGACCTGTGAGGCATGGTCAGGGCGTGGCCG
GTGGTGCATCGTCCGCGCTTGGCCCCCGCCCGGCCGGGGACGTCAGCCCC
CGAGCGAAACGCCTCCACAGGACGACTCTGGGCATGAGCCAGGAAGCAGA
CGGGAACTGGGGTGCAACCGCTGCAAGAGATGGCCGTGGCGATGAGGCCG
AAGAACCTTTACCTTTCCTGCCCAGCGACTTCGACGGCGAGGAGTGGGGG
CCAGAGACGGGGGAGGACGACGACGAAGAGCTCATGGGTGACGAGGCCGA
AGAACCTTTACCTTTCCTGCCCAGCGACTTCGACGGCGAGGAGTGGGGGC
CAGAGACGGGGGAGGACGACGACGAAGAGCTCATGGGTGACGAG back to top
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