mRNA_S-ischiensis_contig9.20593.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20593.1
Unique NamemRNA_S-ischiensis_contig9.20593.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20593.1 vs. uniprot
Match: D7FMW6_ECTSI (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW6_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 2.040e-77
Identity = 152/255 (59.61%), Postives = 180/255 (70.59%), Query Frame = 3 
Query:    9 SLVALSALAGARAFIAP---TVRSAASSQRSARLSPHC------APAWTPGMAARRALTARMSTEVGSTAETEAEAPPK-PTGELTELARLEVRVGKIVEIGPHPDADTLYVEKVDVG---EEEPRTIVSGLAKFCSQEDLLGRSVVVLCNLKPVSMRGVLSAGMLLCASNEDHTEVSPLTPPEACAPGELVTFEGHLGGAFVDPGNRAGKAWKKVAKTLAVNDDMVAAFTGETLPATFQTTSGPITASLKGGIS 734
            SLV+LSALA + AF+AP    +R A++ + +A ++  C        +  P  A RR    R    +   A TE EA P  PTGELTELARLE+R+GKIVEI  HPDAD+LYVEKVD+G   EE PRTIVSGL  FC + DLLGR VVVLCNLKPV+M+GV SAGMLLC+SNEDH++V PL PPE    GELVTF+GHL    VD GNRAGKAWK+ +KTLAV+D   A FTGE LPATF T+ GPIT+ L G IS
Sbjct:    6 SLVSLSALATSSAFVAPGGNAIR-ASTGKTNAAMALRCLSRARLTSSVRPQAALRRPTAVRTMMMMSDAAVTEEEAAPAAPTGELTELARLEIRIGKIVEIARHPDADSLYVEKVDLGQGEEEGPRTIVSGLVNFCEESDLLGRDVVVLCNLKPVNMKGVTSAGMLLCSSNEDHSKVEPLCPPEGVPLGELVTFDGHLPSP-VDAGNRAGKAWKRASKTLAVDDSEEAKFTGEKLPATFMTSKGPITSPLPGSIS 258
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BLAST of mRNA_S-ischiensis_contig9.20593.1 vs. uniprot
Match: A0A835YNH3_9STRA (Endothelial monocyte-activating polypeptide II pro-EMAP II family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH3_9STRA)

HSP 1 Score: 236 bits (601), Expect = 1.250e-70
Identity = 144/242 (59.50%), Postives = 171/242 (70.66%), Query Frame = 3 
Query:   18 ALSALAGARAFIAPTVRSAASSQ-RSA-RLSPHCAPAWTPGMAARRALTARMSTEVGSTAETEAEAPPKPTGELTELARLEVRVGKIVEIGPHPDADTLYVEKVDVGEEE-PRTIVSGLAKFCSQEDLLGRSVVVLCNLKPVSMRGVLSAGMLLCASNEDHTEVSPLTPPEACAPGELVTFEGHLGGAFVDPGNRAGKAWKKVAKTLAVNDDMVAAFTGETLPATFQTTSGPITASLKGGIS 734
            ALSALAGA AF    V  AA ++ RS   +  H A +   G A +  ++   STE G+ A  E   P  P G+LTELARLE+RVG+IVEIG HPDAD LYVEK+D+GE   PRTIVSGL  +CS+ DLL R VV+L NLKPV+MRGV SAGM+LC+SN DHT+V+PL PPE    GELVTFEGHL  A V+ GNRA KAWKKVAKT+AV +D VA FT E LPA F T+ G +T+ L G IS
Sbjct:    9 ALSALAGASAFAPAAVSRAAMARGRSCYHVQHHLARSVNKGWAMQ--MSTEASTEEGAAAAAE---PAAPVGQLTELARLEMRVGRIVEIGRHPDADGLYVEKIDIGEPAGPRTIVSGLVAYCSEADLLNRDVVILANLKPVNMRGVESAGMVLCSSNADHTQVAPLVPPEGTPLGELVTFEGHLA-APVEAGNRAVKAWKKVAKTVAVGEDGVARFTDEALPAAFATSKGVVTSPLPGNIS 244
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BLAST of mRNA_S-ischiensis_contig9.20593.1 vs. uniprot
Match: A0A7S2V4I0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4I0_9STRA)

HSP 1 Score: 205 bits (521), Expect = 8.370e-59
Identity = 112/188 (59.57%), Postives = 136/188 (72.34%), Query Frame = 3 
Query:  174 EVGSTAETEA-EAPPKPTGELTELARLEVRVGKIVEIGPHPDADTLYVEKVDVGEEEPRTIVSGLAKFCSQEDLLGRSVVVLCNLKPVSMRGVLSAGMLLCASNEDHTEVSPLTPPEACAPGELVTFEGHLGGAFVDPGNRAGKAWKKVAKTLAVNDDMVAAFTGETLPATFQTTSGPITASLKGGIS 734
            EV    +T+A E    P GEL E +RLE+RVGKIV++  HPDAD LYVEK+D GE+EPRTIVSGL K+   EDLL RSVVVL NLKP +MRG+ S GMLLCASNEDH++V PL+PPE+  PGEL+T EG L     +P NRA KA+ KVAK L VNDD+ A F G+     F T +GP T+++KG IS
Sbjct:   63 EVSEPVDTDAKEEAAAPAGELNEFSRLEIRVGKIVDVSVHPDADGLYVEKIDCGEDEPRTIVSGLVKYLKAEDLLDRSVVVLANLKPRAMRGITSHGMLLCASNEDHSQVVPLSPPESSVPGELITVEGTLSQPL-EPCNRASKAFDKVAKDLYVNDDLQATFDGKP----FLTPNGPCTSTMKGAIS 245
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BLAST of mRNA_S-ischiensis_contig9.20593.1 vs. uniprot
Match: A0A7S0FZY8_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0FZY8_9RHOD)

HSP 1 Score: 196 bits (498), Expect = 7.570e-55
Identity = 111/200 (55.50%), Postives = 140/200 (70.00%), Query Frame = 3 
Query:  147 RALTARMSTEVGSTA--ETEAEAPPKPTGELTELARLEVRVGKIVEIGPHPDADTLYVEKVDVGEEEPRTIVSGLAKFCSQEDLLGRSVVVLCNLKPVSMRGVLSAGMLLCASNEDHTEVSPLTPPEACAPGELVTFEGHLGGAFVDPGNRAGKAWKKVAKTLAVNDDMVAAFTGETLPATFQTTSGPITASLK--GGIS 734
            RA    MS E   +A  E+E +A   P   LTEL+RLE+R G +V+   HP+ADTLYVE +DVGE+EPRTIVSGL KF S+E+L GR VVVLCNLKP +MRG++S GMLLCASN DH+EV PL+PPE C  GEL+TF+GH   A +DPGNRA KA+ +VA  L+ N+D +A +      A F+T  GP  +  K  GG+S
Sbjct:   99 RASFTTMSAETPESAGAESEKQAEDLP---LTELSRLEIRAGTVVQCKKHPEADTLYVETIDVGEQEPRTIVSGLVKFLSEEELTGRRVVVLCNLKPRTMRGIISQGMLLCASNADHSEVDPLSPPEECGNGELITFDGHKS-APIDPGNRATKAFDRVADDLSTNEDGIAQYQD----AAFKTPFGPCYSPRKLVGGVS 290
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BLAST of mRNA_S-ischiensis_contig9.20593.1 vs. uniprot
Match: W7U6C4_9STRA (Endothelial monocyte-activating polypeptide ii pro-emap ii family protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6C4_9STRA)

HSP 1 Score: 196 bits (498), Expect = 5.300e-54
Identity = 103/173 (59.54%), Postives = 130/173 (75.14%), Query Frame = 3 
Query:  219 PTGELTELARLEVRVGKIVEIGPHPDADTLYVEKVDVGEEE-PRTIVSGLAKFCSQEDLLGRSVVVLCNLKPVSMRGVLSAGMLLCASNEDHTEVSPLTPPEACAPGELVTFEGHLGGAFVDPGNRAGKAWKKVAKTLAVNDDMVAAFTGETLPATFQTTSGPITASLKGGIS 734
            P GELTEL+RLE+R GKI+EI  HP+AD LYVEK+D+GE + PRTIVSGL K+ ++E+LLGR VVVL NLKP +++G+ S GMLLCASNEDHT V PL+PP   A GEL+TFEGH   A   PGNRAGKA+ +VA+ L   +DM+A + G  +P  F T+ GP+T  + G IS
Sbjct:  193 PKGELTELSRLEIRTGKILEISRHPEADGLYVEKIDLGEADGPRTIVSGLVKYQTEEELLGREVVVLANLKPRALKGITSHGMLLCASNEDHTVVKPLSPPPGVALGELITFEGHRA-APEPPGNRAGKAFDRVAEELGAGEDMIATYKG--IP--FMTSKGPVTTGMAGSIS 360
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BLAST of mRNA_S-ischiensis_contig9.20593.1 vs. uniprot
Match: A0A2V3IUX7_9FLOR (Putative methionine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUX7_9FLOR)

HSP 1 Score: 188 bits (478), Expect = 4.510e-52
Identity = 104/158 (65.82%), Postives = 120/158 (75.95%), Query Frame = 3 
Query:  231 LTELARLEVRVGKIVEIGPHPDADTLYVEKVDVGEEEPRTIVSGLAKFCSQEDLLGRSVVVLCNLKPVSMRGVLSAGMLLCASNEDHTEVSPLTPPEACAPGELVTFEGHLGGAFVDPGNRAGKAWKKVAKTLAVNDDMVAAFTGETLPATFQTTSGP 704
            LTEL+RLE+RVGKI+E   HPDADTLYVEKVDVGEEEPRTIVSGL K+   E ++GRSVVVLCNLKP +MRGV S GMLLCASNEDHT V PL  P+    GELVTFEGH   A +DP NRA KA+ +VA  L+ N+  VA F  E +P  F T++GP
Sbjct:  115 LTELSRLEIRVGKIIECEKHPDADTLYVEKVDVGEEEPRTIVSGLVKYIPLEKMVGRSVVVLCNLKPRAMRGVTSHGMLLCASNEDHTVVDPLCAPQDTPIGELVTFEGHKS-APIDPSNRATKAFDRVADGLSTNEAGVAMF--EDVP--FSTSAGP 267
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BLAST of mRNA_S-ischiensis_contig9.20593.1 vs. uniprot
Match: A0A7S0ZE83_9RHOD (Hypothetical protein n=2 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE83_9RHOD)

HSP 1 Score: 186 bits (472), Expect = 8.350e-52
Identity = 103/170 (60.59%), Postives = 121/170 (71.18%), Query Frame = 3 
Query:  231 LTELARLEVRVGKIVEIGPHPDADTLYVEKVDVGEEEPRTIVSGLAKFCSQEDLLGRSVVVLCNLKPVSMRGVLSAGMLLCASNEDHTEVSPLTPPEACAPGELVTFEGHLGGAFVDPGNRAGKAWKKVAKTLAVNDDMVAAFTGETLPATFQTTSGPI--TASLKGGIS 734
            LTEL+RLE+RVGK+VE   HPDADTLYVEKVDVGE+EPRTIVSGL  F SQE+L GR+V+VLCNLKP +MRG+ S GMLLCASNEDHT+V PLT P   A G L+TFEGH   A +D GNRA KA+ KVA     + D +A F        F T +G     A L+G +S
Sbjct:   68 LTELSRLEIRVGKVVECERHPDADTLYVEKVDVGEDEPRTIVSGLVNFMSQEELNGRTVIVLCNLKPRAMRGIKSHGMLLCASNEDHTKVDPLTAPPDAAIGSLITFEGHRA-APMDAGNRASKAFDKVASEFNTDADGIARFNATP----FMTEAGACYSPAKLQGSVS 232
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BLAST of mRNA_S-ischiensis_contig9.20593.1 vs. uniprot
Match: A0A7S2R5F0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5F0_9STRA)

HSP 1 Score: 182 bits (462), Expect = 2.950e-50
Identity = 95/172 (55.23%), Postives = 124/172 (72.09%), Query Frame = 3 
Query:  219 PTGELTELARLEVRVGKIVEIGPHPDADTLYVEKVDVGEEEPRTIVSGLAKFCSQEDLLGRSVVVLCNLKPVSMRGVLSAGMLLCASNEDHTEVSPLTPPEACAPGELVTFEGHLGGAFVDPGNRAGKAWKKVAKTLAVNDDMVAAFTGETLPAT-FQTTSGPITASLKGGI 731
            P GE+TEL+RLE+RVGKI+E+  HP  + ++VEK+DVGE+EPRTI SGL  +  ++DLL +  +VLCNLKP  + GV S GM+LCAS+ +HT+V  + PP   A GELVTF+GHL  A VD GNRA KA+KKVA     +D   A FTGE  PA+ FQT+SGP T+ +  G+
Sbjct:   69 PVGEMTELSRLEIRVGKILEVAVHPTKEKIFVEKIDVGEDEPRTICSGLRDYLKEDDLLNKDCIVLCNLKPRDLDGVPSNGMVLCASDAEHTDVQLVVPPAGVAAGELVTFDGHLA-APVDAGNRAVKAFKKVAGLFKTDDSGAAVFTGE--PASSFQTSSGPCTSPISNGV 237
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BLAST of mRNA_S-ischiensis_contig9.20593.1 vs. uniprot
Match: A0A7S0XDL6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDL6_9STRA)

HSP 1 Score: 177 bits (450), Expect = 7.920e-49
Identity = 94/170 (55.29%), Postives = 126/170 (74.12%), Query Frame = 3 
Query:  228 ELTELARLEVRVGKIVEIGPHPDADTLYVEKVDVGEEE-PRTIVSGLAKFCSQEDLLGRSVVVLCNLKPVSMRGVLSAGMLLCASNEDHTEVSPLTPPEACAPGELVTFEGHLGGAFVDPGNRAGKAWKKVAKTLAVNDDMVAAFTGETLPATFQTTSGPITASLKGGIS 734
            ELTEL+RLE+RVGKIVE+G HP+AD LYVEK+D+GE   PRTIVSGL +FC+ + LL  +V+VLCNLKP +++G+ S GM+LC +++D T+V PL PP     G+L+TFEGHL    V+PGNRA KA+ K+A    VN+  VA + G  +P  F T +GP+T++L G IS
Sbjct:   51 ELTELSRLEIRVGKIVEVGRHPEADGLYVEKIDLGEPTGPRTIVSGLVQFCTVDRLLNNNVIVLCNLKPRALKGITSNGMVLCTTSKDETKVDPLIPPPDAPIGQLITFEGHLSEP-VEPGNRATKAFTKIADGFYVNEQGVATYNG--IP--FSTPNGPVTSTLIGKIS 215
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BLAST of mRNA_S-ischiensis_contig9.20593.1 vs. uniprot
Match: A0A0G4FLN6_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FLN6_9ALVE)

HSP 1 Score: 177 bits (450), Expect = 5.060e-48
Identity = 100/179 (55.87%), Postives = 121/179 (67.60%), Query Frame = 3 
Query:  192 ETEAEAPPKPTGELTELARLEVRVGKIVEIGPHPDADTLYVEKVDVGEEEPRTIVSGLAKFCSQEDLLGRSVVVLCNLKPVSMRGVLSAGMLLCASNEDHTEVSPLTPPEACAPGELVTFEGHLGGAFVDPGNRAGKAWKKVAKTLAVNDDMVAAFTGETLPATFQTTSGPITASLKGG 728
            ET    P    G LTEL+RLEVR G+IV +  HP+AD+LYVE +DVGEE+PRTIVSGL KFC+ E+L  R VVVLCNLKP +MRGV+SAGMLLCAS+E  ++V PL PP    PGELV FEG        PG+RAG+A++KVA  L  +D  VA    +T    F     P+T SL GG
Sbjct:   91 ETAISTPADNQGALTELSRLEVRAGRIVSVEAHPNADSLYVETIDVGEEKPRTIVSGLRKFCTLEELQNREVVVLCNLKPRAMRGVVSAGMLLCASDEGKSKVEPLAPPPGTKPGELVMFEGSSSRPCT-PGDRAGRAFEKVAAGLVTDDKGVAR--AKTTGGPFGELEEPVTFSLPGG 266
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMW6_ECTSI2.040e-7759.61Endothelial monocyte-activating polypeptide II pro... [more]
A0A835YNH3_9STRA1.250e-7059.50Endothelial monocyte-activating polypeptide II pro... [more]
A0A7S2V4I0_9STRA8.370e-5959.57Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0FZY8_9RHOD7.570e-5555.50Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
W7U6C4_9STRA5.300e-5459.54Endothelial monocyte-activating polypeptide ii pro... [more]
A0A2V3IUX7_9FLOR4.510e-5265.82Putative methionine--tRNA ligase n=1 Tax=Gracilari... [more]
A0A7S0ZE83_9RHOD8.350e-5260.59Hypothetical protein n=2 Tax=Timspurckia oligopyre... [more]
A0A7S2R5F0_9STRA2.950e-5055.23Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0XDL6_9STRA7.920e-4955.29Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A0G4FLN6_9ALVE5.060e-4855.87Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1712122..1718463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score250.0
Seed ortholog evalue9.5e-64
Seed eggNOG ortholog2880.D7FMW6
Preferred nameYARS
KEGG rclassRC00055,RC00523
KEGG koko:K01866
KEGG ReactionR02918
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000049,GO:0001664,GO:0002682,GO:0002685,GO:0002688,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004812,GO:0004831,GO:0005102,GO:0005126,GO:0005153,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006437,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0006915,GO:0006935,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009605,GO:0009966,GO:0009987,GO:0010467,GO:0010469,GO:0010646,GO:0010758,GO:0012501,GO:0016070,GO:0016604,GO:0016874,GO:0016875,GO:0017101,GO:0017102,GO:0019538,GO:0019752,GO:0023051,GO:0030334,GO:0030545,GO:0031974,GO:0031981,GO:0032101,GO:0032879,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034660,GO:0040011,GO:0040012,GO:0042056,GO:0042221,GO:0042330,GO:0042379,GO:0043038,GO:0043039,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045236,GO:0046483,GO:0048018,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0050918,GO:0050920,GO:0051270,GO:0051716,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0098772,GO:0140098,GO:0140101,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1905521,GO:2000145
EggNOG free text desc.tRNA binding
EggNOG OGsCOG0143@1,KOG2241@2759
EC6.1.1.1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleic acid-binding, OB-fold
Ec32 orthologEc-09_002760.1
Exons6
Model size1669
Cds size603
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20593.1prot_S-ischiensis_contig9.20593.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1712710..1717531 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817387.7590976-UTR-S-ischiensis_contig9:1712121..17121811622817387.7590976-UTR-S-ischiensis_contig9:1712121..1712181Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1712122..1712181 +
1695741075.984129-UTR-S-ischiensis_contig9:1712121..17121811695741075.984129-UTR-S-ischiensis_contig9:1712121..1712181Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1712122..1712181 +
1622817387.7721295-UTR-S-ischiensis_contig9:1712635..17127091622817387.7721295-UTR-S-ischiensis_contig9:1712635..1712709Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1712636..1712709 +
1695741075.998216-UTR-S-ischiensis_contig9:1712635..17127091695741075.998216-UTR-S-ischiensis_contig9:1712635..1712709Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1712636..1712709 +
1622817387.852641-UTR-S-ischiensis_contig9:1717531..17184631622817387.852641-UTR-S-ischiensis_contig9:1717531..1718463Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1717532..1718463 +
1695741076.0732203-UTR-S-ischiensis_contig9:1717531..17184631695741076.0732203-UTR-S-ischiensis_contig9:1717531..1718463Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1717532..1718463 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817387.7841659-CDS-S-ischiensis_contig9:1712709..17128531622817387.7841659-CDS-S-ischiensis_contig9:1712709..1712853Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1712710..1712853 +
1695741076.0187278-CDS-S-ischiensis_contig9:1712709..17128531695741076.0187278-CDS-S-ischiensis_contig9:1712709..1712853Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1712710..1712853 +
1622817387.7991693-CDS-S-ischiensis_contig9:1713611..17137761622817387.7991693-CDS-S-ischiensis_contig9:1713611..1713776Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1713612..1713776 +
1695741076.031945-CDS-S-ischiensis_contig9:1713611..17137761695741076.031945-CDS-S-ischiensis_contig9:1713611..1713776Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1713612..1713776 +
1622817387.8124652-CDS-S-ischiensis_contig9:1714679..17147331622817387.8124652-CDS-S-ischiensis_contig9:1714679..1714733Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1714680..1714733 +
1695741076.044391-CDS-S-ischiensis_contig9:1714679..17147331695741076.044391-CDS-S-ischiensis_contig9:1714679..1714733Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1714680..1714733 +
1622817387.8238788-CDS-S-ischiensis_contig9:1716570..17167201622817387.8238788-CDS-S-ischiensis_contig9:1716570..1716720Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1716571..1716720 +
1695741076.0558536-CDS-S-ischiensis_contig9:1716570..17167201695741076.0558536-CDS-S-ischiensis_contig9:1716570..1716720Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1716571..1716720 +
1622817387.8383489-CDS-S-ischiensis_contig9:1717441..17175311622817387.8383489-CDS-S-ischiensis_contig9:1717441..1717531Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1717442..1717531 +
1695741076.064383-CDS-S-ischiensis_contig9:1717441..17175311695741076.064383-CDS-S-ischiensis_contig9:1717441..1717531Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1717442..1717531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20593.1

>prot_S-ischiensis_contig9.20593.1 ID=prot_S-ischiensis_contig9.20593.1|Name=mRNA_S-ischiensis_contig9.20593.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=201bp
MAARRALTARMSTEVGSTAETEAEAPPKPTGELTELARLEVRVGKIVEIG
PHPDADTLYVEKVDVGEEEPRTIVSGLAKFCSQEDLLGRSVVVLCNLKPV
SMRGVLSAGMLLCASNEDHTEVSPLTPPEACAPGELVTFEGHLGGAFVDP
GNRAGKAWKKVAKTLAVNDDMVAAFTGETLPATFQTTSGPITASLKGGIS
*
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mRNA from alignment at S-ischiensis_contig9:1712122..1718463+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20593.1 ID=mRNA_S-ischiensis_contig9.20593.1|Name=mRNA_S-ischiensis_contig9.20593.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6342bp|location=Sequence derived from alignment at S-ischiensis_contig9:1712122..1718463+ (Schizocladia ischiensis KU_0333)
TGCGCCCATCTCTTGTGGCTTTGTCCGCCTTGGCGGGCGCACGCGCCTTC
ATCGCGCCAAGTAAGTGACTTGTGCTCATCGCAGGACGTGGTAATCGCGG
CTTGCATGCAAAGTTGCAGTAATTTTGCTCTGCACGTGTACTTACTGTAG
TTGATGCGCCGTACCCAGGACGCGTATTCGGCTTGAGGCTTGACGAGCTC
CGGCGAGGGACCAACAGGACGAGACGCACGAATCGGGGCGACATCAAATC
TAAGTCCTTGTGCCACAGTTGTCTGCAACTTGATCCATAGGGCACGCCCG
GACACAGCATGAGCACAAGGTGCTCGCCATTGCCCACGACAGAGGGGTTC
GCTAATACGAGTGGACTAGCGTGGATGCCATAGCTCGATTCCCCCCCCAG
GGTGTACCATCAGAGCCCCCCTGAGCCCATGAGGACATAAATAGCCCTCT
TGTTCCTCACGAACACAGGCCCTTACTTCCCACCTCGCCGGCAATGTCTT
GCGCGACACGGCAGCCGTCCGGTCCGCCGCCTCCTCGCAGCGCTCCGCAC
GGCTGTCACCGCACTGCGCGCCGGCGTGGACGCCTGGCATGGCGGCAAGG
CGGGCATTGACGGCAAGGATGTCGACGGAGGTGGGGAGCACGGCCGAGAC
GGAGGCCGAAGCGCCACCAAAGCCGACGGGCGAGCTAACGGAGCTGGCAC
GCCTGGAGGTCCGCGTGGGGAAGATAGTCGAGGTGCGTGATTCGTTTAAA
TTGTAACTGTTCCTCCTTGGGTTTCCTTTATTTTCTGCTATATTGGCCCT
GCGAGTGAAGGCGAATGAAAAGACGGTGGGGGCCCCTGAACTCGCGTAAG
TAGGAACACCTCTCCTCTCCCACTCGCTTGTTTATCTTCGAGCCAAAATT
GTAACGAGGTACAATCGCACGTGTGTGACATTGACTGTTCTCGTATTAGT
AGTTTTCCCATTTAAGAATCAAGTGTTCTTGTATTACAGTAGTGATTATC
ACATAGTCGAGGTGCGTTCGTCCTCGGCCAAGTCACACAGGCATTTCGGG
CGGGTCTGCTTTCAGTTTGCCATCGATACTTGAGCCCTGACGCCGGTGAA
CTCAAGCAGTGTTGGTGAGTTGGGCGAGTCCCCTGTTGCATGCATGGGTG
TTCAAGTACTACGGTACTCATTGTGCGTGCGTTGCACGTGTGAGTACCCA
AGCGTGCGGCCACCCTCGCACCCAGCGATTAAAACCCACTCTCTCCTTCC
CTGCCTCCCTCCCTGCCTCCCTTGCTTGCTCTCTTTCCCCCCCCCCCACA
CACCCGTTCTCTCTCCCTCTCTTCCTCTCCTCCCTCTCTCCCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCCCTCTCCTGTCTCTCCTGTCTCTCTCTCTC
CCTCTCCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCCCTCC
CTCCCTCCCTCTCCCTCTCCCTCTCCTCCATCTCTTTCAGATTGGGCCCC
ATCCCGACGCAGACACCCTGTACGTGGAGAAGGTGGATGTGGGCGAGGAG
GAGCCCAGGACCATTGTCTCCGGGCTGGCCAAGTTCTGCTCGCAAGAAGA
CCTCCTGGGCCGCAGTGTGGTGGTGCTGTGCAACCTCAAGCCCGTCAGTA
TGCGGGTGAGTGGAATCACCAAAGTGCTGGTGCAAGTTGGGAGCAGTACA
GTAGTGTTTGTAATGGCAGTACTCAGCACAGTGTAGCAGAGCACGACGCA
GTGGACATACTTTGAAGTAATACACACTGGGCCGCAGTGCGGTGGTGCTG
TGCAACCTCAAGCCTGTCAGTATGCGGGTGAGTGGAATCACCAAAAATCA
ACAGTCAATCTCACGCACGTGCGATTGTACCTCGTTACTTCGAAGTACAA
CGTATACGAATCACCGAAACTTGCATCACAGAGGTCTGGGCCACAGTGTG
GCGGTGCTGTGCACCCTCAAGCCCGTCGGCATGCGGGTGAGTATATATGT
GTACTCACGTGGTGCTTGCCGTAGTCCCGAGACCATTGACCAATACGCGG
GGGAGTGGAATCACCAAAACTTCCTTGATGTGATAGTCACTAATATGAGG
ACACTCAATTCTTAAGTGGGACAACTACTGTACTGTAAGTTCTAATACGA
GAACAGTCAATCTCACACACGTGCGATTGTACCTCGTTACAATTTATATG
AATCACCAAAACTTCCTTAAAAGAAGGCTAAGTATCGTGGATGGGTGAGG
TCCGTGCGGCTACAGTATGGCAAAAGCAACTCACGACGACGACCCCCGGC
ATGGGCACGCCCACCATCACCACCACCGCCATCACCACCGCCACAAGCAC
TACTGCCGCTGCCGCCACCGTTGCCACCGCCACCACCACCACCATCACCA
TCACAACTACCACCACCACCACACACCACCACCACCACCACCACCACCCC
CACTGCCGCAGACCCCATGCGGACCGCTACCCTACCGCCCCTGCTCACTA
CCGTTGTGCCCTGTGCCCGCGTGGTTGTTGTCTGGGCTGCCTTGGCAAAC
TCGTGCAGGGGGTCTTGTCTGCGGGCATGCTTCTGTGCGCCAGCAACGAG
GACCACACGGAGGTGGGTACAGCACTGCACGTTTTTTAAACTCTTTTACA
AGTAGCCCTGGGGTCCGTATATTCATAGGGTTTTTGGTGTGTAAGTCCAA
TTTAGTAGGGGTAAAAGGGTTAAGGCCGTTCTTGAACTGTCTGGGATTGG
CTTGACCGCTGCAAGTCTTTGAGGCCTCCAAGTCCTTGGATGTAGGTCCT
GTACTGTAGTATTAGCAAGAACAACACAGGGCGAGGTGCAGGCCACGTCA
CCAAAGACGTCAGCAGTGGCCCTTCCTTATAGCTCGCCAGGGGAAATTGA
GTGGGGAAGGGGAGAAAAGGAGGAGGGGGAGGTGGACGGGGAGGAGGAGG
AGGAGGAGGATGTAAGTAGTAGAGTAGTGCTTGGCAGTGAGGATGTCCCA
GACGCACGATAGGTATGCATGGTGCTTGTTTGCCCTTGGGGGGCTACAAG
TACTGTGGCGGCGTTCTTAGTGCCCGCTTGTCTCTGATGCTGTCATTCAT
GTTCGTCTGGAAGTTATCAAGAACCGCCTTCCGTGAACAGACACAGTATA
CTTGTACTCACGCTGTGCTTGCTGTAGTCCCGAGACCATTGACCACGCGC
CTCGGTCGAGAGGGAGCAGGACAGACACAGTAGAGTACATTGATGAATAC
ACAAGCATGGTGGAGACCGTGCTTTATAGTACGAAGTGCATAGGATCTCA
GTGGTGGAGCTTCCCCTATTCATAAGCAGCAGAGACTTGAATGGAGGGGT
GAGGGGCGGGGGATAGGAAGATGGAGTAGAAAGAGGAGGAGGACAACACA
TGTGTATGTGTGCTTCGAAGTACTGCATAGTAGAGTACACTAGCTGTTTG
TTCAGGAGGGCAAGCCTGGGAAAATGTCGGGTTGCCGGCCATGCGCGCAA
GGGCAATACACGCCTTCCAGTTTACAAGCGTATATGTATACTACGTACTT
CCTCAAGTACTACATAGTATATATGCTGTGGTCAATGGTTTCGGGACTAC
GGCAAGCACAACGTGAGTACATACAAGTATATGCTAGTGCTGTGGTCAAT
GGTCTTGGGACCACGGCAAGCACAACGTGAGCACATATGCGCTAGTACTC
GTATGAGAGAATGCTCCGCCGTCAACGGCATGTGGTCAATGGTCTCGGGA
CTACGGCAAGCACAACGTGGGTACATATATGAGTACATATATGCTAGTAC
AAGTGATTGCTCCGTCGTCAACGGCGTGTGGTCAATGGTCTCGGGACTAC
GGAAAGTACAACGTGAGTACACGTGTACGGGTACGAGTATACTTCGAGGT
ATACATACAAGTATACACACATTCCGAAGTAGGTAGTCTCTATGTGCTTC
GAAGTATATCATGTTGGTGTACTTGGAAATACAACTGCACGGAGCCGCAT
GTGTACTGACATTGTGCTTGCTATAGGCCCGAGACCATTTGACCACGCGC
CTCCAGGGGCTGAAATGGGACAGCAACCCAGCAACGAGTACTCGTACGTA
GATGGCACAGCTACCCAGCAATGAGTACTCGTACGTAGTACTCTAGGCCC
CTTGCAATGCCCTTGATGTGATAATCACTAGTATAAGAACACTCCATTCT
TAAATGGGATCACTACTACTCGTACAGTACAAGTACTACGAGAACACCTA
TTCTCACACACGTGCGATTGTACCTCGTTACAATTTATACGAATCACTGC
CCTCGACAGGTGTCACCCCTCACGCCAGCGGAGGCGTGCGCGCCGGGGGA
GTTGGTGACCTTTGAGGGCGTTTGTGGAACAGTAACCGAGTAACGAGTAC
TCGTACGTACTCGAGTAGTTATCTAAGCCCCTTCCATTGCCCTCAACAGG
TGTCGCCCCTCACGCCGCCAGAGGCGTGCGCGCCGGGGGAGTTGGTGACC
TTTGAGGGGCACCTTGGGGGGGCGTTTGTGGACCCGGGGAACCGCGCCGG
CAAGGCCTGGAAGAAGGTCGCCAAGACCTTGGCGGTGAATGATGACATGG
TGGGTTCAGTGATGGAATATCGATAAGTAGATAGCGACCGGGCCCGACTG
AAATTGTGGGTGGCGTTGCAACTACTGTACTTGGATTTGGAGGGGGTCAA
ATTATCGAATATCGACTATTGATCTATGGCCCGGAACTCGCATGCCATCA
GAATAATTTAAAAGATCAGTACTGTCGATAAATAGGTTGATTTGCTTAGA
TATTCCATCACTGGGTGGGTTCACTTCCTGCAGTCACCCACTCGCTTGCT
TCACTGTAACGTGTGCAGGCTTGCCACAATTGAGTAGTTGAAATACGGGC
TGCAGTATACTATACTTGTAGGTACTTTGAAGTATATGTCTGTGTGTTGC
TCCGAGGTGCCAGGCAGAGTCAAGGGCATGTGGCCAGTGGCCTTTGGGCT
ACGGCGGGCACAAGGCCATTGCTGCACATGCATGCTCCACTTCTCTACTA
GCAAGTGTGTACTTCGAAGTACTTGGTAGCGGTGTGCAATGCGCCCGAGT
ATTGTGTACAAGTATTCTTAGAAAATGATGAGTCGACACACACACACACA
CACGTAAACCCGAAAGCAAGAGCAACAAACACAGGCGCGCGCGCGCGCAC
ACACACACACACACCACTACACGCTCACTCAGCACTCAAATCTCGCTTTT
CGCCGCCACATCTTCTCACGTGCACCACCCCACTGCCCGCCCCTCCGTCC
TTCCTTCATTCCCTTGACAGGTGGCCGCATTCACGGGCGAGACCCTGCCC
GCCACATTCCAGACCACCTCCGGCCCCATCACCGCCTCTCTCAAGGGTGG
CATTTCATGAGCCTACCATTGTACAAGCGTCCTCTCAGGGTGGCATTGCA
CACGCTTTCGTGAGGCCCTACCCGCCAACTTCCAGACCAAGTCCGGCCCC
ATCACCGCCTCTCTCAAGGGTGGCATTTCGTGAGCCTACCATTGTACGCG
CCCGCCTCAAGAAAAACCCTGGCTGCGTCTGGATTGCCCCCCTTTGCGGC
CAAGTGGAGAGGCGTGCAATCGTCTGAGGCTATGGCCTCCTTATTCGCCC
CGGCCTGCAGCAGACACCTGGGACCAATACAGTGCAAGCGTGGCCTGACT
GGGGGGGGTGACTGTGGGCGCTTTGGTGGCCCGCCCGCAGGGGAGAGGAG
TTTTTTTCCGGTGGTCGCACACCATAGCGGCTCGGGGTTGGACGAGGTGT
GGACGGGTGTGAGTCTTGATGGTACATCTACTCAGAAATAGCAGCAGCAG
GAGTAGTTTTTTGTGAGAAGACAAGCACGCGAGCGGGAAAGAAGAGGTGT
TGCTACTTACGCGGGTTAAGGCCCCCACCCCCGGAAGCAAGAAGATAAAC
AAGCGAGTGGCAAAGGAGAGGTGTTCCCACTTACGCGAGTTCGGGGCCCC
ACCCCCGGAAGCAAGAATACAAACATGTGAGTGGGAAAGAAGAGATGTTC
CGTATGCGAGTTCGGGGCCCCCCATCCCCGGAAGCCCTTCCTTTCGCTCG
CCTTCACTCTTGTATGGCTTGAGAGCTCCCGGACTCTGCTTGGATGGTGG
TGTGACCGGTCCGGACGTGCAGTTCCAGGGGATAGACTGCGTGTGCCCAG
TGCTTGTCAGAACTTGCAGCACCTGCTCCTGGAGCGCTGTTGGGGTGACT
GTTATATCCGTGGACCGGGACTCGGTCTGCAGTGCTTTGAGGCACTTCGT
AGCAAACAAGATTTAACTTTATATGAATTTCGCACAAGTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1712122..1718463+

>mRNA_S-ischiensis_contig9.20593.1 ID=mRNA_S-ischiensis_contig9.20593.1|Name=mRNA_S-ischiensis_contig9.20593.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1206bp|location=Sequence derived from alignment at S-ischiensis_contig9:1712122..1718463+ (Schizocladia ischiensis KU_0333)
ATGGCGGCAAGGCGGGCATTGACGGCAAGGATGTCGACGGAGGTGGGGAG
CACGGCCGAGACGGAGGCCGAAGCGCCACCAAAGCCGACGGGCGAGCTAA
CGGAGCTGGCACGCCTGGAGGTCCGCGTGGGGAAGATAGTCGAGATGGCG
GCAAGGCGGGCATTGACGGCAAGGATGTCGACGGAGGTGGGGAGCACGGC
CGAGACGGAGGCCGAAGCGCCACCAAAGCCGACGGGCGAGCTAACGGAGC
TGGCACGCCTGGAGGTCCGCGTGGGGAAGATAGTCGAGATTGGGCCCCAT
CCCGACGCAGACACCCTGTACGTGGAGAAGGTGGATGTGGGCGAGGAGGA
GCCCAGGACCATTGTCTCCGGGCTGGCCAAGTTCTGCTCGCAAGAAGACC
TCCTGGGCCGCAGTGTGGTGGTGCTGTGCAACCTCAAGCCCGTCAGTATG
CGGATTGGGCCCCATCCCGACGCAGACACCCTGTACGTGGAGAAGGTGGA
TGTGGGCGAGGAGGAGCCCAGGACCATTGTCTCCGGGCTGGCCAAGTTCT
GCTCGCAAGAAGACCTCCTGGGCCGCAGTGTGGTGGTGCTGTGCAACCTC
AAGCCCGTCAGTATGCGGGGGGTCTTGTCTGCGGGCATGCTTCTGTGCGC
CAGCAACGAGGACCACACGGAGGGGGTCTTGTCTGCGGGCATGCTTCTGT
GCGCCAGCAACGAGGACCACACGGAGGTGTCGCCCCTCACGCCGCCAGAG
GCGTGCGCGCCGGGGGAGTTGGTGACCTTTGAGGGGCACCTTGGGGGGGC
GTTTGTGGACCCGGGGAACCGCGCCGGCAAGGCCTGGAAGAAGGTCGCCA
AGACCTTGGCGGTGAATGATGACATGGTGTCGCCCCTCACGCCGCCAGAG
GCGTGCGCGCCGGGGGAGTTGGTGACCTTTGAGGGGCACCTTGGGGGGGC
GTTTGTGGACCCGGGGAACCGCGCCGGCAAGGCCTGGAAGAAGGTCGCCA
AGACCTTGGCGGTGAATGATGACATGGTGGCCGCATTCACGGGCGAGACC
CTGCCCGCCACATTCCAGACCACCTCCGGCCCCATCACCGCCTCTCTCAA
GGGTGGCATTTCATGAGTGGCCGCATTCACGGGCGAGACCCTGCCCGCCA
CATTCCAGACCACCTCCGGCCCCATCACCGCCTCTCTCAAGGGTGGCATT
TCATGA
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