mRNA_S-ischiensis_contig9.20590.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20590.1
Unique NamemRNA_S-ischiensis_contig9.20590.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1686953..1688040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size666
Cds size378
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20590.1prot_S-ischiensis_contig9.20590.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1687240..1688040 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817366.7795694-UTR-S-ischiensis_contig9:1686952..16872391622817366.7795694-UTR-S-ischiensis_contig9:1686952..1687239Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1686953..1687239 +
1695741060.4870799-UTR-S-ischiensis_contig9:1686952..16872391695741060.4870799-UTR-S-ischiensis_contig9:1686952..1687239Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1686953..1687239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817366.7915082-CDS-S-ischiensis_contig9:1687239..16874521622817366.7915082-CDS-S-ischiensis_contig9:1687239..1687452Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1687240..1687452 +
1695741060.4982474-CDS-S-ischiensis_contig9:1687239..16874521695741060.4982474-CDS-S-ischiensis_contig9:1687239..1687452Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1687240..1687452 +
1622817366.8050802-CDS-S-ischiensis_contig9:1687875..16880401622817366.8050802-CDS-S-ischiensis_contig9:1687875..1688040Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1687876..1688040 +
1695741060.5095394-CDS-S-ischiensis_contig9:1687875..16880401695741060.5095394-CDS-S-ischiensis_contig9:1687875..1688040Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1687876..1688040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20590.1

>prot_S-ischiensis_contig9.20590.1 ID=prot_S-ischiensis_contig9.20590.1|Name=mRNA_S-ischiensis_contig9.20590.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=126bp
MPRGRRVQLPPLPVAVGPCYQYFPSQERFPAVFPLMPTVVGGVPLWGDGR
VLHWSRNGEDEDSVAEDLPVAAGRSHHSRNGRGGGTAPGLAPVPAEPTAA
ALLMWAPDTLAVVRAGCSPEQWTKWL
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mRNA from alignment at S-ischiensis_contig9:1686953..1688040+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20590.1 ID=mRNA_S-ischiensis_contig9.20590.1|Name=mRNA_S-ischiensis_contig9.20590.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1088bp|location=Sequence derived from alignment at S-ischiensis_contig9:1686953..1688040+ (Schizocladia ischiensis KU_0333)
GCGAGAGTGGAAGCGACCCGAAAGCCCAACAGGACGAGGGACTGTAGGGC
TCTGGGGGTTTTTGTGGAGGGTTGTTGCGCAATCGAAGGGGTCGGACCCC
CATGTTTTTTTTAGCGGCTAGCCGGTGGGAGGGGACAGCGCCGACACGCC
CCCACCGCCAACACCTGGGGGCACCCCCACCGCCGCAGCCGCCGCCACAG
CCTCAATACCACCACCGCCATCCCGTCATCACCGTCACCACCAGCACCTC
TTACTTTCCCCACAACCCGTGACCGACGGCCGCCGTGATGCCTCGTGGAA
GAAGGGTGCAGCTGCCCCCCCTGCCAGTTGCCGTCGGCCCGTGCTACCAG
TATTTTCCCTCTCAAGAGCGCTTCCCGGCTGTGTTCCCGCTTATGCCCAC
TGTCGTGGGCGGCGTGCCGTTATGGGGGGACGGCCGCGTCTTGCACTGGA
GCCGCAACGGCGAGGACGAGGATAGCGTGGCCGAGGACCTGCCAGTGGCG
GTGAGTCTCTCATTGCGATTTATGTCCATGGTGGGCCCGACTTGTTGAAC
AAGCACGACCAAATACAATGCGGCTCCGGCGCTCCAAACCTGTGGAAACC
GGTCTCGGTGAGCGGCACCGCAGCCATTTTGGAGGCCAGGGGTGTGCACG
GCTTGCTCTCCTTCGCACCCACAACGACCGGACAACTGGTCAGCGCCCGG
CACGGCGTGGGCGTTTGAAGCCCATGCTCTCATGCCCAGAGATGTGTGCA
GGGCTCTCGTGCGCACTCACCCCTCCCTTCTGTCTGCCCCTCGCCGATGA
GCTCGGGCCTCCACCAGAGCAGCTACTATGGACCCCCTTTCAGCCTCTGG
ACGCCTATATGCACATGTGCACCTGTCTTTCTTGTTGCTTACACAACATG
CCCCCCCCCCCCACCACCATCAGGCTGGCCGCTCCCACCACAGCCGAAAC
GGCCGCGGCGGCGGCACGGCCCCAGGCCTGGCCCCCGTGCCGGCGGAACC
CACGGCCGCCGCCCTCCTCATGTGGGCACCGGACACCCTGGCTGTGGTGC
GGGCTGGCTGCAGCCCCGAGCAGTGGACCAAGTGGCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1686953..1688040+

>mRNA_S-ischiensis_contig9.20590.1 ID=mRNA_S-ischiensis_contig9.20590.1|Name=mRNA_S-ischiensis_contig9.20590.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=756bp|location=Sequence derived from alignment at S-ischiensis_contig9:1686953..1688040+ (Schizocladia ischiensis KU_0333)
ATGCCTCGTGGAAGAAGGGTGCAGCTGCCCCCCCTGCCAGTTGCCGTCGG
CCCGTGCTACCAGTATTTTCCCTCTCAAGAGCGCTTCCCGGCTGTGTTCC
CGCTTATGCCCACTGTCGTGGGCGGCGTGCCGTTATGGGGGGACGGCCGC
GTCTTGCACTGGAGCCGCAACGGCGAGGACGAGGATAGCGTGGCCGAGGA
CCTGCCAGTGGCGATGCCTCGTGGAAGAAGGGTGCAGCTGCCCCCCCTGC
CAGTTGCCGTCGGCCCGTGCTACCAGTATTTTCCCTCTCAAGAGCGCTTC
CCGGCTGTGTTCCCGCTTATGCCCACTGTCGTGGGCGGCGTGCCGTTATG
GGGGGACGGCCGCGTCTTGCACTGGAGCCGCAACGGCGAGGACGAGGATA
GCGTGGCCGAGGACCTGCCAGTGGCGGCTGGCCGCTCCCACCACAGCCGA
AACGGCCGCGGCGGCGGCACGGCCCCAGGCCTGGCCCCCGTGCCGGCGGA
ACCCACGGCCGCCGCCCTCCTCATGTGGGCACCGGACACCCTGGCTGTGG
TGCGGGCTGGCTGCAGCCCCGAGCAGTGGACCAAGTGGCTGGCTGGCCGC
TCCCACCACAGCCGAAACGGCCGCGGCGGCGGCACGGCCCCAGGCCTGGC
CCCCGTGCCGGCGGAACCCACGGCCGCCGCCCTCCTCATGTGGGCACCGG
ACACCCTGGCTGTGGTGCGGGCTGGCTGCAGCCCCGAGCAGTGGACCAAG
TGGCTG
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