mRNA_S-ischiensis_contig9.20586.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20586.1
Unique NamemRNA_S-ischiensis_contig9.20586.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1651021..1652108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size367
Cds size285
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20586.1prot_S-ischiensis_contig9.20586.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1651103..1652108 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817366.645514-UTR-S-ischiensis_contig9:1651020..16511021622817366.645514-UTR-S-ischiensis_contig9:1651020..1651102Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1651021..1651102 +
1695741060.3873682-UTR-S-ischiensis_contig9:1651020..16511021695741060.3873682-UTR-S-ischiensis_contig9:1651020..1651102Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1651021..1651102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817366.6570802-CDS-S-ischiensis_contig9:1651102..16512651622817366.6570802-CDS-S-ischiensis_contig9:1651102..1651265Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1651103..1651265 +
1695741060.3988633-CDS-S-ischiensis_contig9:1651102..16512651695741060.3988633-CDS-S-ischiensis_contig9:1651102..1651265Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1651103..1651265 +
1622817366.6693032-CDS-S-ischiensis_contig9:1651986..16521081622817366.6693032-CDS-S-ischiensis_contig9:1651986..1652108Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1651987..1652108 +
1695741060.4102976-CDS-S-ischiensis_contig9:1651986..16521081695741060.4102976-CDS-S-ischiensis_contig9:1651986..1652108Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1651987..1652108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20586.1

>prot_S-ischiensis_contig9.20586.1 ID=prot_S-ischiensis_contig9.20586.1|Name=mRNA_S-ischiensis_contig9.20586.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=95bp
MSAPQDDPEQPPLRRTVAKRTWPTIGGPLPGLGACGLLPRPEPRLANGVQ
RASRGSPPAALAHPPALAAPVRPEDFYVSSDEGEDASTSRGGEEK
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mRNA from alignment at S-ischiensis_contig9:1651021..1652108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20586.1 ID=mRNA_S-ischiensis_contig9.20586.1|Name=mRNA_S-ischiensis_contig9.20586.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1088bp|location=Sequence derived from alignment at S-ischiensis_contig9:1651021..1652108+ (Schizocladia ischiensis KU_0333)
CTCCATCAGACACGCGTGACCGGGCAGGAGCTCGCAGAGATTGCATGACC
CAGGAGCTGGTTGTACACAGGAGCCAAGCCCCATGAGCGCACCCCAGGAT
GACCCGGAGCAGCCTCCCCTTCGGAGGACAGTTGCAAAGCGAACCTGGCC
CACGATCGGCGGACCGCTGCCAGGGCTGGGGGCCTGCGGGCTGCTGCCCA
GGCCGGAGCCCAGGCTGGCGAATGGAGTACAGCGCGCGTCTCGCGGTGAG
TTGGTTTCAAAGCCGTCCGAAGTCTTGGGCCTATCCCGCTGACCCGGCAC
AGTTTTGCGTCCTAGGGGCTTTGCGCGACTGGGGCGGGATAATTTCGGGC
TTGTGTGGGGCCCTGGGCCAGGCCCAGGCCCAGGCCCCAGGCCCACCCTT
CGATCATCTCTCTTTTGTCGACGGCCTCCGCGCGCACCCCCCGACTCCTC
TTTTCTCCATCTGAGGCCGCCCCACCACAGTCTGGAGCAGGCATGCATTG
TAAAGTTTCCCCCCCGCAGGCGGGGGCACACGGCTTCCCTGGATGACTTG
TCTTCCCGGTCAATTTTTTTTGTCGCCAGAGCGGGCCGCTACACCCCCGG
AGTCCCGCTGGAACGGCTGTATCGTCCTGTCAGCGGGGCTCTGCGCACCC
CCCCCCACTGCGTCTTTCTGGAGCCTGAGGACGCCCCACATGCAGTAGTC
TCGCACGGGGTGTGCACGGATACCCCGTGCATTATTCGGCGGCGTTGACG
GCGCTCCTGGGCACACCTCTGGCGCGCGCCTTCATTGCCAACCCCCCCAA
TATCTGCCCCAACCAGAAAGGCCTACTGTAAGCTCCACAGTTTTCCTCCC
TTCCGCTGTGTGCTTTGGTGACGCGCCTGCTCCGCCCCTCCCCCCCGCCC
GGTCGGGGCCCCGCGCATGGTTTTGACTTGACGCCCCCCCACACGCCTAC
CCCGGTCGATGCCCAGGGAGCCCGCCTGCCGCCCTGGCGCATCCGCCGGC
GCTCGCCGCTCCCGTGAGACCGGAGGACTTTTACGTGTCATCCGACGAGG
GGGAGGATGCCTCAACTTCACGAGGAGGGGAAGAAAAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1651021..1652108+

>mRNA_S-ischiensis_contig9.20586.1 ID=mRNA_S-ischiensis_contig9.20586.1|Name=mRNA_S-ischiensis_contig9.20586.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=570bp|location=Sequence derived from alignment at S-ischiensis_contig9:1651021..1652108+ (Schizocladia ischiensis KU_0333)
ATGAGCGCACCCCAGGATGACCCGGAGCAGCCTCCCCTTCGGAGGACAGT
TGCAAAGCGAACCTGGCCCACGATCGGCGGACCGCTGCCAGGGCTGGGGG
CCTGCGGGCTGCTGCCCAGGCCGGAGCCCAGGCTGGCGAATGGAGTACAG
CGCGCGTCTCGCGATGAGCGCACCCCAGGATGACCCGGAGCAGCCTCCCC
TTCGGAGGACAGTTGCAAAGCGAACCTGGCCCACGATCGGCGGACCGCTG
CCAGGGCTGGGGGCCTGCGGGCTGCTGCCCAGGCCGGAGCCCAGGCTGGC
GAATGGAGTACAGCGCGCGTCTCGCGGGAGCCCGCCTGCCGCCCTGGCGC
ATCCGCCGGCGCTCGCCGCTCCCGTGAGACCGGAGGACTTTTACGTGTCA
TCCGACGAGGGGGAGGATGCCTCAACTTCACGAGGAGGGGAAGAAAAAGG
AGCCCGCCTGCCGCCCTGGCGCATCCGCCGGCGCTCGCCGCTCCCGTGAG
ACCGGAGGACTTTTACGTGTCATCCGACGAGGGGGAGGATGCCTCAACTT
CACGAGGAGGGGAAGAAAAA
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