mRNA_S-ischiensis_contig9.20578.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20578.1
Unique NamemRNA_S-ischiensis_contig9.20578.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1581881..1582797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817366.3853004-CDS-S-ischiensis_contig9:1581880..15821971622817366.3853004-CDS-S-ischiensis_contig9:1581880..1582197Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1581881..1582197 -
1695741060.188876-CDS-S-ischiensis_contig9:1581880..15821971695741060.188876-CDS-S-ischiensis_contig9:1581880..1582197Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1581881..1582197 -
1622817366.396822-CDS-S-ischiensis_contig9:1582712..15827971622817366.396822-CDS-S-ischiensis_contig9:1582712..1582797Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1582713..1582797 -
1695741060.2041452-CDS-S-ischiensis_contig9:1582712..15827971695741060.2041452-CDS-S-ischiensis_contig9:1582712..1582797Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1582713..1582797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20578.1prot_S-ischiensis_contig9.20578.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1581881..1582797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20578.1

>prot_S-ischiensis_contig9.20578.1 ID=prot_S-ischiensis_contig9.20578.1|Name=mRNA_S-ischiensis_contig9.20578.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=134bp
VEGRAAAAEWLRRYFLAQPGLQPTMEWDGRVTQGHPSSMPFRHGADTLSH
LHRCLSRHFPRSSSSTPPPPPSPPLAGLDADPYCGHSSRRRRGHHHAWGH
DASPTTQLNGGSDPVVVTVSHCLDWAQRSGARGA
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mRNA from alignment at S-ischiensis_contig9:1581881..1582797-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20578.1 ID=mRNA_S-ischiensis_contig9.20578.1|Name=mRNA_S-ischiensis_contig9.20578.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=917bp|location=Sequence derived from alignment at S-ischiensis_contig9:1581881..1582797- (Schizocladia ischiensis KU_0333)
GTGGAGGGGAGGGCGGCGGCAGCGGAGTGGCTGCGTCGGTATTTCTTGGC
GCAGCCGGGGCTCCAGCCGACGATGGAGTGGGATGGTGGGTCGGGCCGGG
GAGGTTGATTTGTAGAGTACTTCGAAGTATGAGGTATCACTGATAGTATG
ACGCAGTTGGCCTGCTTGAAGTTGTCATCTATTGCGGTGGTGTGGAGGAC
GAAGTGACACCGAACGTACTGTAGTATGATGAAGTTGGCCTGCTTGAAGT
TGTCATCTATATACAGTGGTGGAGGTGGAGGGAGGGTGTCGTGCTCTATA
AGTCGGCGAAGGGTGAGCGCTGCTCGGCTCTGCTGTACAAGTGCCCGTGT
TGGTAGTTCGGCTGGCCGGTGCATGACAACGCGAGGTGACACTGTGTACT
ACGAGTGCTGTACTACTCGAGTACAGTGGTGTAGGTTGATACATGACCGC
AGAGTAAATGCCACGCAGCGTTGGATTCATTCGTGAAGTGCTGAAGCACT
GCCCCTCCCCCCCCTCCTCCTCCTCCCTCCTCCTCCTCCTCCTCCTCCTC
CCCCTCCCCCTCACCCCCCTCCCCCTCCCCCTCCCCCTCCTCCCGCGCAG
GGCGCGTAACACAAGGCCACCCTAGCTCCATGCCCTTCAGGCACGGCGCC
GATACCCTGTCCCACCTCCACCGCTGCCTCTCCAGACACTTCCCTCGCTC
CTCCTCCTCAACTCCGCCGCCGCCGCCATCCCCGCCTTTAGCCGGGCTGG
ACGCCGACCCCTACTGCGGCCATAGCAGCCGCCGCCGCCGCGGCCACCAC
CACGCCTGGGGACACGACGCGTCCCCCACCACGCAGCTCAACGGCGGCAG
CGACCCCGTGGTCGTCACCGTGTCCCACTGCCTCGACTGGGCCCAGCGAA
GCGGGGCTCGCGGCGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1581881..1582797-

>mRNA_S-ischiensis_contig9.20578.1 ID=mRNA_S-ischiensis_contig9.20578.1|Name=mRNA_S-ischiensis_contig9.20578.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=804bp|location=Sequence derived from alignment at S-ischiensis_contig9:1581881..1582797- (Schizocladia ischiensis KU_0333)
GTGGAGGGGAGGGCGGCGGCAGCGGAGTGGCTGCGTCGGTATTTCTTGGC
GCAGCCGGGGCTCCAGCCGACGATGGAGTGGGATGGTGGAGGGGAGGGCG
GCGGCAGCGGAGTGGCTGCGTCGGTATTTCTTGGCGCAGCCGGGGCTCCA
GCCGACGATGGAGTGGGATGGGCGCGTAACACAAGGCCACCCTAGCTCCA
TGCCCTTCAGGCACGGCGCCGATACCCTGTCCCACCTCCACCGCTGCCTC
TCCAGACACTTCCCTCGCTCCTCCTCCTCAACTCCGCCGCCGCCGCCATC
CCCGCCTTTAGCCGGGCTGGACGCCGACCCCTACTGCGGCCATAGCAGCC
GCCGCCGCCGCGGCCACCACCACGCCTGGGGACACGACGCGTCCCCCACC
ACGCAGCTCAACGGCGGCAGCGACCCCGTGGTCGTCACCGTGTCCCACTG
CCTCGACTGGGCCCAGCGAAGCGGGGCTCGCGGCGCGGGCGCGTAACACA
AGGCCACCCTAGCTCCATGCCCTTCAGGCACGGCGCCGATACCCTGTCCC
ACCTCCACCGCTGCCTCTCCAGACACTTCCCTCGCTCCTCCTCCTCAACT
CCGCCGCCGCCGCCATCCCCGCCTTTAGCCGGGCTGGACGCCGACCCCTA
CTGCGGCCATAGCAGCCGCCGCCGCCGCGGCCACCACCACGCCTGGGGAC
ACGACGCGTCCCCCACCACGCAGCTCAACGGCGGCAGCGACCCCGTGGTC
GTCACCGTGTCCCACTGCCTCGACTGGGCCCAGCGAAGCGGGGCTCGCGG
CGCG
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