mRNA_S-ischiensis_contig9.20574.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20574.1
Unique NamemRNA_S-ischiensis_contig9.20574.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20574.1 vs. uniprot
Match: D8LSL3_ECTSI (Phosphoribulokinase/uridine kinase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSL3_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 1.580e-9
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 MTGLAGLGLAAATGAAEVVLTDGNPEAVANQQACVSLNRSAGKFGATDVRATHLLWD 171
            M+GLAGLG+AA + A EVV+TDGNP+A+   + CV LN   G FG T V A  L+WD
Sbjct:  168 MSGLAGLGVAACSDAGEVVITDGNPDALRTLEECVELNAKEGVFGDTRVAARRLVWD 224
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BLAST of mRNA_S-ischiensis_contig9.20574.1 vs. uniprot
Match: A0A7J7E447_TRIWF (Calmodulin-lysine N-methyltransferase n=3 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7E447_TRIWF)

HSP 1 Score: 49.3 bits (116), Expect = 6.140e-5
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    7 GLAGLGLAAATGAAEVVLTDGNPEAVANQQACVSLNRSAGKFGATDVRATHLLWD 171
            GLAGL +AAAT A+EVV+TDGNP+ +   Q   S++ ++G FG T V+A  L WD
Sbjct:  148 GLAGLVIAAATKASEVVITDGNPQVIDYIQR--SIDSNSGVFGGTSVKAMMLHWD 200
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BLAST of mRNA_S-ischiensis_contig9.20574.1 vs. uniprot
Match: A0A2R6WIF9_MARPO (Calmodulin-lysine N-methyltransferase n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WIF9_MARPO)

HSP 1 Score: 48.9 bits (115), Expect = 8.530e-5
Identity = 31/56 (55.36%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    7 GLAGLGLAAATGAAEVVLTDGNPEAVANQQACVSLNRSAGKFGATDVRATHLLWDR 174
            GL GL +AA T AAEVV+TDGNPE V   +  V  NRSA  FG T V ++ L W R
Sbjct:  162 GLGGLAIAACTDAAEVVITDGNPEVVDYIEQNVQTNRSA--FGNTAVSSSTLYWSR 215
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BLAST of mRNA_S-ischiensis_contig9.20574.1 vs. uniprot
Match: A0A176WU23_MARPO (Calmodulin-lysine N-methyltransferase n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176WU23_MARPO)

HSP 1 Score: 48.9 bits (115), Expect = 8.870e-5
Identity = 31/56 (55.36%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    7 GLAGLGLAAATGAAEVVLTDGNPEAVANQQACVSLNRSAGKFGATDVRATHLLWDR 174
            GL GL +AA T AAEVV+TDGNPE V   +  V  NRSA  FG T V ++ L W R
Sbjct:  319 GLGGLAIAACTDAAEVVITDGNPEVVDYIEQNVQTNRSA--FGNTAVSSSTLYWSR 372
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSL3_ECTSI1.580e-956.14Phosphoribulokinase/uridine kinase family protein ... [more]
A0A7J7E447_TRIWF6.140e-552.73Calmodulin-lysine N-methyltransferase n=3 Tax=Trip... [more]
A0A2R6WIF9_MARPO8.530e-555.36Calmodulin-lysine N-methyltransferase n=1 Tax=Marc... [more]
A0A176WU23_MARPO8.870e-555.36Calmodulin-lysine N-methyltransferase n=1 Tax=Marc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1531138..1532842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog2880.D8LSL3
Preferred nameCAMKMT
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K18826,ko:K21804
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006417,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008277,GO:0008757,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0010646,GO:0016043,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0018022,GO:0018025,GO:0018193,GO:0018205,GO:0019222,GO:0019538,GO:0022400,GO:0023051,GO:0031072,GO:0031323,GO:0031326,GO:0032101,GO:0032259,GO:0032268,GO:0032991,GO:0034248,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:1901564,GO:2000112
EggNOG free text desc.calmodulin-lysine N-methyltransferase activity
EggNOG OGsCOG1072@1,KOG2702@2759,KOG3201@1,KOG3201@2759
EC2.1.1.60
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Hectar predicted targeting categorysignal peptide
Exons2
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817386.8208117-CDS-S-ischiensis_contig9:1531137..15312331622817386.8208117-CDS-S-ischiensis_contig9:1531137..1531233Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1531138..1531233 +
1695741075.2115402-CDS-S-ischiensis_contig9:1531137..15312331695741075.2115402-CDS-S-ischiensis_contig9:1531137..1531233Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1531138..1531233 +
1622817386.8359377-CDS-S-ischiensis_contig9:1532698..15328421622817386.8359377-CDS-S-ischiensis_contig9:1532698..1532842Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1532699..1532842 +
1695741075.2263765-CDS-S-ischiensis_contig9:1532698..15328421695741075.2263765-CDS-S-ischiensis_contig9:1532698..1532842Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1532699..1532842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20574.1prot_S-ischiensis_contig9.20574.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1531138..1532842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20574.1

>prot_S-ischiensis_contig9.20574.1 ID=prot_S-ischiensis_contig9.20574.1|Name=mRNA_S-ischiensis_contig9.20574.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=80bp
MTGLAGLGLAAATGAAEVVLTDGNPEAVANQQACVSLNRSAGKFGATDVR
ATHLLWDRHKAAAGSLAALRRGQGGGGGGG
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mRNA from alignment at S-ischiensis_contig9:1531138..1532842+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20574.1 ID=mRNA_S-ischiensis_contig9.20574.1|Name=mRNA_S-ischiensis_contig9.20574.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1705bp|location=Sequence derived from alignment at S-ischiensis_contig9:1531138..1532842+ (Schizocladia ischiensis KU_0333)
ATGACGGGGCTGGCGGGGCTGGGGCTGGCGGCCGCGACAGGCGCGGCCGA
GGTGGTGCTCACGGACGGGAACCCGGAGGCGGTCGCCAACCAGCAGGTGA
GGGAGGTAGGCTTGTACCGTAGTCGTCGGAGAGATTTTGCCCTCGCAGGA
CGATTTTCGGGGGAATGTTTCTCGCCAGGAATGTCCTGGATTGTCCCGAA
AGCCCTTGAAGAAGTTCCCCCAGGTCCTGCAGGCGATTTTCCGAGTTTTC
CTGCGCGAATCCGACCAGTATTCGGCGAGAAAAGCTCTCCCGAACATGGG
CACGGGGGGGCAAGATGTCTCCGACGACTACGGTAGGCCCAGTGAAGGGC
CTACCTCAGGTGGAGGTATGAATGGCCGATAAACGTGGTGGTTGCTGGCT
TGAAGGGCTCTGATTGCCGGGAGCCAGGAGGGGTCATGAACCAGCTGGTG
GTACGTGTTGAGTGGTAGAGTACTGTACTCGTGCAGCACAATGTACTGCA
CGCGGTACTCTTGTACTGTGGGCACTGTTTGTGGGCCACACTACGTACGG
TACAGTACAGAACAGTCCAGTAGTACTGATGCCGGACAAAGTGGTCTGTT
GTGTTGCCTCGTACGGTATACTACTATATGTACTGACGTTGTGGTTGCCG
TAGTCCCGAGACCATTGACCACGCGCCTCGGTCAAGATGGAGCAGGACCC
CTCCCTCCCCTGGCAGAGCCAGGGTGGGAGGGGGTGGCCACCCCCCAGTA
GCAACATTACTCACACGGCACTTGTTCCTCAGTGCTTGCTTCTCTGCTCT
GATCCTGGAAAGCGCGGGTACTCGATACTGACTCTGAGGCCGTGGATGGA
GGCGTGCGCTCACCAGCCGGGTTTCGGGAGCACGGCACCAATGAGACCGG
GCGATTCTGGCCGGGCTGACGCAAGTCATGTGACTTGATGCCATGTGTTT
CTTGCACTAATGTACTCTTGTGAGCTATAAGGAAGGGCCACTGCTGAGGT
CTGTAGTGACATGGCCCGCACCTCGCCCTGTGCTGTTCCTGTTAATACTG
TACCCTTAAGTACTGTTGTTGGGCATCACATCACATCCCTTCACCGCAGC
AGTCTGGGAGCTCATCCATACCCGAACTCCCGAGGATTTGTTATCGTGTT
CATTCGATTTTTGGTGCGCTTGACACGTGTGTCGACTGCGGCCAATCGGT
TCTCATTGGGCCCCCCTAACGTTTACCGTACATACTCTGAAATGATATTT
TTAGTATGCACTGTTCTGCTCCGCCTCGAATGAGGTGCGGGGCCAATGGT
CTCGGGACTACGGCAAGCACCACGTGAGTACATAAAAAAATATGTATACT
GTTCGGTCCAGGGCATGCACACAGACGAGAAACCTCGTCTGACCGTGAGT
GCACACACACTGCTCCGTCTCGACCGAGGCGCATGGTCAGCGGTCTCGGG
ACTACAGCAAGCACAATGTGAGTACTCGTACGTACTACTTAGTATTTATA
CACACACTCAGCCACAGTTCCGTGCCCCTCTCCGGCGAATAATGGTCCCA
ATCATTGCCAGGCGTGCGTGAGCCTCAACCGCTCGGCCGGCAAATTCGGC
GCCACAGACGTGCGGGCGACCCACCTCCTCTGGGACCGGCACAAAGCAGC
CGCTGGGTCCCTTGCCGCGCTACGAAGGGGGCAGGGCGGCGGTGGCGGTG
GTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1531138..1532842+

>mRNA_S-ischiensis_contig9.20574.1 ID=mRNA_S-ischiensis_contig9.20574.1|Name=mRNA_S-ischiensis_contig9.20574.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=480bp|location=Sequence derived from alignment at S-ischiensis_contig9:1531138..1532842+ (Schizocladia ischiensis KU_0333)
ATGACGGGGCTGGCGGGGCTGGGGCTGGCGGCCGCGACAGGCGCGGCCGA
GGTGGTGCTCACGGACGGGAACCCGGAGGCGGTCGCCAACCAGCAGATGA
CGGGGCTGGCGGGGCTGGGGCTGGCGGCCGCGACAGGCGCGGCCGAGGTG
GTGCTCACGGACGGGAACCCGGAGGCGGTCGCCAACCAGCAGGCGTGCGT
GAGCCTCAACCGCTCGGCCGGCAAATTCGGCGCCACAGACGTGCGGGCGA
CCCACCTCCTCTGGGACCGGCACAAAGCAGCCGCTGGGTCCCTTGCCGCG
CTACGAAGGGGGCAGGGCGGCGGTGGCGGTGGTGGCGCGTGCGTGAGCCT
CAACCGCTCGGCCGGCAAATTCGGCGCCACAGACGTGCGGGCGACCCACC
TCCTCTGGGACCGGCACAAAGCAGCCGCTGGGTCCCTTGCCGCGCTACGA
AGGGGGCAGGGCGGCGGTGGCGGTGGTGGC
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