mRNA_S-ischiensis_contig9.20568.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20568.1
Unique NamemRNA_S-ischiensis_contig9.20568.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1455753..1459670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size636
Cds size423
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20568.1prot_S-ischiensis_contig9.20568.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1456094..1459670 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817366.1999826-UTR-S-ischiensis_contig9:1455752..14559591622817366.1999826-UTR-S-ischiensis_contig9:1455752..1455959Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1455753..1455959 +
1695741060.0743213-UTR-S-ischiensis_contig9:1455752..14559591695741060.0743213-UTR-S-ischiensis_contig9:1455752..1455959Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1455753..1455959 +
1622817366.2127688-UTR-S-ischiensis_contig9:1456087..14560931622817366.2127688-UTR-S-ischiensis_contig9:1456087..1456093Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1456088..1456093 +
1695741060.08468-UTR-S-ischiensis_contig9:1456087..14560931695741060.08468-UTR-S-ischiensis_contig9:1456087..1456093Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1456088..1456093 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817366.2247877-CDS-S-ischiensis_contig9:1456093..14561591622817366.2247877-CDS-S-ischiensis_contig9:1456093..1456159Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1456094..1456159 +
1695741060.0948966-CDS-S-ischiensis_contig9:1456093..14561591695741060.0948966-CDS-S-ischiensis_contig9:1456093..1456159Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1456094..1456159 +
1622817366.2362192-CDS-S-ischiensis_contig9:1457633..14577371622817366.2362192-CDS-S-ischiensis_contig9:1457633..1457737Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1457634..1457737 +
1695741060.112677-CDS-S-ischiensis_contig9:1457633..14577371695741060.112677-CDS-S-ischiensis_contig9:1457633..1457737Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1457634..1457737 +
1622817366.2488172-CDS-S-ischiensis_contig9:1458817..14589681622817366.2488172-CDS-S-ischiensis_contig9:1458817..1458968Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1458818..1458968 +
1695741060.1272624-CDS-S-ischiensis_contig9:1458817..14589681695741060.1272624-CDS-S-ischiensis_contig9:1458817..1458968Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1458818..1458968 +
1622817366.2603798-CDS-S-ischiensis_contig9:1459568..14596701622817366.2603798-CDS-S-ischiensis_contig9:1459568..1459670Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1459569..1459670 +
1695741060.1380498-CDS-S-ischiensis_contig9:1459568..14596701695741060.1380498-CDS-S-ischiensis_contig9:1459568..1459670Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1459569..1459670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20568.1

>prot_S-ischiensis_contig9.20568.1 ID=prot_S-ischiensis_contig9.20568.1|Name=mRNA_S-ischiensis_contig9.20568.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=141bp
MPPLVKGELKHNLKEQLAKFEEAQRSGVLAGLITADGKPVNGGQHERWPT
RFVRRRRPRATEDGSSGTGNSTPAKRPQPGDPGTLEHFWRCREELQRGRP
VYTGPPRIKPARPLRMLREEIGITRGGGGGGGGGGGSGGFG
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mRNA from alignment at S-ischiensis_contig9:1455753..1459670+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20568.1 ID=mRNA_S-ischiensis_contig9.20568.1|Name=mRNA_S-ischiensis_contig9.20568.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3918bp|location=Sequence derived from alignment at S-ischiensis_contig9:1455753..1459670+ (Schizocladia ischiensis KU_0333)
GCGAAATCGAATTGAGAGCAAACGGCCGCCAACGAGGGAGAGTGCGCTCC
CTGAAGGCTCAACGGGCAGCGAACAGAGGCAGAACGCCTATGCTGTTCAC
CGCTCTTGCCGAGAGAAAGTGAATTCCTGCTATCTGGGAGAGGGTACGTG
TCCCGGCTCCCTGCGCAATTTGGTCCCCGGGTCGTGGCAACGTTCGCATG
AGGCCAGGTACGTTCGCGACCGTTGCGGCAAGTGCCTCACCTTGAGCCGG
ACTCTTCGCTCTAAGTGGACTGACGTCCCGGCAGATGGGATTCGATGTTA
ACAGCCGCAGTCCCCTCCCCTCTCTGACCTTGCAGATCGCTATGCCTCCT
TTGGTCAAGGGCGAGCTCAAGCACAACCTGAAGGAGCAATTGGCCAAATT
TGAGGAGGTACAATCACCAGCGTTTTGATACAAAAGCTGTTTGACGAGCC
ATCCATTGTTCGACATATTGGCATAGGGATAGCATAGCCCACGCCGTACG
CCAAAGGAGCTAGGAAAGTACTTTGGATCGAATGCGTGTCCCTCCGTCAG
GGGACCTGCGGCCCGCTACTCGGTTTCAGGACGGGGGGGGCGGACTGGGG
TCGATATATCGCGCGATAGTGGCTCTGCCATCGCTGTACTTCTTTGACGT
TTCATGTTTTGATGCTGCATTTGAATAATGCGACATCGCAACAGACCTGT
GTGGATCAGCTGTGAACCTCACTGCTTCTATGCTGCAACAAAAAGGGCGG
GGTCCCGGGTATGACTCCCCTCTCATGCCAAAACAAGGTTGGCACGATGC
AGTTGGGGAAGTTTTGCCGGAGCCGACACACTGGGGGGGGCGGGAGGTTC
GGGCCGGGATTGTCGGACCCCCCCCCCTTCCAGGGCTGTGTGTGGCTCCG
GGGGGCGGGGGCACCCCCCTCACCTCGGGACCGACCGAATGGCCGGTTTG
TTGCACTTTAGAAGCAGCGTGCTTCACCGCTGAGCCAGTAGCTATACAGT
GGCTGGGGTGAGATCTAGTGAGTACCGTATACCGCGCTTCATATTGTACT
GTACTACTTCCGGAAGTGCATGTGCACTCGAGCACCCGAGATGAGTTTTT
GAAGGCCAATTTTTTACTAGCTAGGTCGATCGACTGTAGTACTCGACCGT
ACACCAAGTCCTGCACATGCCTCAGCCAATTCAGAATCTATCCTACTGTA
GGGTACCTAATCGTACTCGTAGTACTGTGCTGCACGAGCGCATACTGTAC
TCCAGGTACTCACCTACTGTAGCGTACAAGTTCAGAATAGCACTTCGAAG
TACTTCAAGGTCTTAAGGTCTTGTGCGTCATACATACGGCGTTCGGCAGC
GTTGAAGCGGGACCGCTCCCGATGCGGAAACACGGGTCACCAATAGTCCC
CCCATTTTTTATCTGGAGAGGCGCGCGGTCACGAGGTCTCGGGGACCGCG
TCCAGCTCTGTTGGATGCGAGCGCAGCAAGGCTTCAACGCAATAAATATT
GCTACAGTAGGCGAAATGCAGTACTCGTACACGTCAATGCCGACACCTCA
ACACTGGGCCGCGCTTTGTCACAAAGCGGTGACAAGGAGTCACATCAACA
TATCGGTACGGTATTGCTTCAAAGTACTGTACGACTGTACCTCCTCCTTT
TCTCCCCTTCCCCACACAAGCTTCCCGTGGCGAGCTAGGGAAGGGCCACT
GTTGAGGTCTTTAGTGACGTGGCCTGCACCTCACCCCGTGTTGTTCCTGT
TAGTACTGCCACCCCACCCCGCCGTGTTACTTCAAAGTACTGTACTACTG
TAGTACTTGATCTGCTTAGGGTTTGCATGCGTCCACTGTTGTCCCAACCC
CTGGCCACCCCACCCCGCCGTGTTGGCGCAGGCCCAACGCTCCGGGGTCC
TGGCCGGCCTGATCACAGCGGACGGGAAGCCGGTGAACGGGGGACAGCAC
GAGCGCTGGCCCACCCGCTTCGTCCGCCGCCGCCGGTGGGTGGTGGTGTA
CTTCAAAGTGTTGTGGTTGATTGATGCTTTCGAAGTGTGATGCGACGTGT
GCCCTAGTGCGCTGTGCTGCACAGCAGTTTGAAATCGAAGCCGGTGAAAG
GGGGACAGCACGAGCGCTGGCCCACCCGCTTCGTCCGCCGCCGCCGGTGG
GTGGCGTACTTCGAAGTACTTCAAAGTATTGCGATTGATGGCTTTCGAAG
TGTGATGTGACGTGTACCCTATTGCGCGGTGCTGCACAGCAGTTTTGTAC
AAGACGACAAACAAGCGAGCGGGAAAGAAGAGGTGTCCCTACATATGCGA
GTCAGGGCCCCACCCCCGGAAGCCCTTACTTTCACTCGCCTTCACTCGCA
GTTTGACATCATGTCACATAAAATCGCCGCACGATTGATGCTCTGAAGCG
CTTCCCCCGCGGGTCAGGTTCTTGGGCGAAGCACTAATGTACGTAGCGCG
CGGAATGATATTGCTCGTTTGCGAAAGGAGGACAGCACGAGTGCTGGTCC
ACCCGCTGCGTCCGCCGCCAGTTGTGGGTGACGCGCCGTGATCGATACTT
GTGGTGTGTGATGTGATGTGATGTGATGTGTGCTCTGTGGCGCTATACTG
GAGGTTGATCTCACATCACATCACATCACACCGCATCGCTGTGATGTGAT
GTGATGTGTACTCTGTGGCGCTGTACTGCAGGTTGATATCACATTACATC
ACATCACGCCACATCGCCTCTCCCTGTCGCTACGCAAGGGTGCCCTGCAG
GCCCTGAGGGAAGCGCAGTCCACGAGATGTCGGCTGCAGTGATGGAATAT
CTAAGCAAATCAACCTATGTGTCGACCGTCGGTGATCTATATATCTATCG
ATAGTCGATGTTCGATAGTTTGACCCACACTAAAATCAAGTACATCAAAG
TAAGTAGCTAGTATCGACACCCACAAAATCAGTCGAGCCCGATAACTGTC
TACAGATCGATATTCCATCACTGGTCGGCTGTGCCTAGAAAGTCATCGTC
GCCCCCGGGGCGCCTCTCCCATCCCGCCCCCTCCCCGCCGTTGTTGCCTC
CCCCATCCCGGGCAGGCCGAGGGCAACGGAGGATGGCAGCAGTGGCACCG
GCAACAGCACCCCGGCCAAGAGGCCCCAACCGGGCGATCCGGGCACTCTG
GAGCACTTTTGGCGCTGCCGCGAAGAGCTTCAGCGCGGGCGCCCTGTATA
CACCGGCCCGCCAAGGGTATGTTGTTTGTTTTTTTGGTTTTCTTCATTGT
ACCTGAAGTATTTATGATACTTCTGCCATAGTAAGCACACAGGCCCCCAG
GCCTCGCTGCTTCACTGCCCTCGTCAACGGCGGTAATGAACACCGTTTCA
ACGTGAGACGAGGTACTTCGACACCCCGAACCGCCTGCAGCGGGATGAGT
TGTGTTTGTGTGTGGTGGTGATGGCTTTGGTGTCTGTGTGGTTGGTTGTC
TGGTTGGTGCGTGCGGCAGGTGTATATATTAGGTAGTTGAGGGGTGGTGG
TGGTGGTGGCGGTGGCGGTGGCGGCGGCGGCGGTGATGGCGACGGTGTTG
CTTTGGTAGTGGTGGTGCCAGTGGCGGTCGGGGGTGTTAGTGGGAGAGGT
GGTTTATGCTACAGTGCTGTGCACCCAACTCTCTGTGCGTTTCCGTACAC
GCCGGTCCTTCCAAGTACAGACATGAAAGAATCGCTCCCTTCATGTGCCC
GGCCCAACGTCTAGTCCCAGCCCTTCACCACGCATGCCGGGGGACAGCCC
AAACCGTCGCCCCCCCCCCTGCCCTCCCCCCTTCCTCGTTCTCGCTCCTC
CGCGGCCTTCACTCAGATCAAACCGGCCAGGCCTTTGCGAATGCTCCGAG
AAGAGATCGGCATCACGCGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCAGCGGCGGGTTTGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1455753..1459670+

>mRNA_S-ischiensis_contig9.20568.1 ID=mRNA_S-ischiensis_contig9.20568.1|Name=mRNA_S-ischiensis_contig9.20568.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=846bp|location=Sequence derived from alignment at S-ischiensis_contig9:1455753..1459670+ (Schizocladia ischiensis KU_0333)
ATGCCTCCTTTGGTCAAGGGCGAGCTCAAGCACAACCTGAAGGAGCAATT
GGCCAAATTTGAGGAGATGCCTCCTTTGGTCAAGGGCGAGCTCAAGCACA
ACCTGAAGGAGCAATTGGCCAAATTTGAGGAGGCCCAACGCTCCGGGGTC
CTGGCCGGCCTGATCACAGCGGACGGGAAGCCGGTGAACGGGGGACAGCA
CGAGCGCTGGCCCACCCGCTTCGTCCGCCGCCGCCGGCCCAACGCTCCGG
GGTCCTGGCCGGCCTGATCACAGCGGACGGGAAGCCGGTGAACGGGGGAC
AGCACGAGCGCTGGCCCACCCGCTTCGTCCGCCGCCGCCGGCCGAGGGCA
ACGGAGGATGGCAGCAGTGGCACCGGCAACAGCACCCCGGCCAAGAGGCC
CCAACCGGGCGATCCGGGCACTCTGGAGCACTTTTGGCGCTGCCGCGAAG
AGCTTCAGCGCGGGCGCCCTGTATACACCGGCCCGCCAAGGGCCGAGGGC
AACGGAGGATGGCAGCAGTGGCACCGGCAACAGCACCCCGGCCAAGAGGC
CCCAACCGGGCGATCCGGGCACTCTGGAGCACTTTTGGCGCTGCCGCGAA
GAGCTTCAGCGCGGGCGCCCTGTATACACCGGCCCGCCAAGGATCAAACC
GGCCAGGCCTTTGCGAATGCTCCGAGAAGAGATCGGCATCACGCGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGGTTTGGCATCAAA
CCGGCCAGGCCTTTGCGAATGCTCCGAGAAGAGATCGGCATCACGCGCGG
CGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGCGGGTTTGGC
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