mRNA_S-ischiensis_contig9.20564.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20564.1
Unique NamemRNA_S-ischiensis_contig9.20564.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig9.20564.1 vs. uniprot
Match: A0A6H5KKK8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK8_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 8.240e-35
Identity = 96/228 (42.11%), Postives = 126/228 (55.26%), Query Frame = 1
Query:   61 YVTQEDVHAAELTPREALEFAAKLRMGRGSSRAEHTACVDAVLRRLALLPCADQRIGDALARGVSGGQRKRLSIGCGIIGLADLRLLFLDEPTTGLDSGAALRVLQTVRALARAPAGSGPGIPGPGSVGPLGGPGFSAGPAPGPGGRXXXXXXXXXPPQLVVLATVHQPSPELFALFDRVLVLAEGRQVYYGPAGAAAADYFSGPALGHLFRCPPGRNPAEFVLSVAQ 744
            YVTQ+D H AELT RE+L FA +L MG G  R +  A V+ +L  L L  CAD R+G+ L RG+SGG+ +RLS+G G+  L  +RLL LDEPTTGLDS +A  V+   R LA                                              + VV+A+VHQPS E+F+LFD+VLV+  GRQ ++G A + AAD  S P LG +    PG+N AEF+L  A+
Sbjct:  266 YVTQDDFHVAELTVRESLAFAVRLSMG-GRER-DRRARVEELLDVLGLRACADVRVGNPLERGISGGEARRLSMGIGVAALESVRLLLLDEPTTGLDSSSAAEVMLLARKLAS------------------------------------------RRDRRVVVASVHQPSAEMFSLFDKVLVMVGGRQAFFGSA-SKAADILSRPELGIMPT--PGQNSAEFILLAAK 446          
BLAST of mRNA_S-ischiensis_contig9.20564.1 vs. uniprot
Match: W7TLH8_9STRA (Abc transporter g family member 29 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLH8_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.230e-31
Identity = 92/230 (40.00%), Postives = 118/230 (51.30%), Query Frame = 1
Query:   61 YVTQEDVHAAELTPREALEFAAKLRMGRGSSRAEHTACVDAVLRRLALLPCADQRIGDALARGVSGGQRKRLSIGCGIIGLADLRLLFLDEPTTGLDSGAALRVLQTVRALARAPAGSGPGIPGPGSVGPLGGPGFSAGPAPGPGGRXXXXXXXXXPPQLVVLATVHQPSPELFALFDRVLVLAEGRQVYYGPAGAAAADYFSGPALGHLFRCPPGRNPAEFVLSVAQGA 750
            YVTQ++VH    T RE L FAA LR+  G   A+    VD VL  L L   AD  +GD+L +G+SGGQ +RL+IG  II L  +  +FLDEPTTGLDS  +  V+  VR LA                                                 V  T+HQPS E+FALFD+++++A+G QVY+G A   A  YFS PAL   F    G NPAEFV+S + G+
Sbjct:  737 YVTQDNVHIGCFTVRETLHFAALLRIKEGVRPAQREKMVDDVLGMLGLDSVADVMVGDSLRKGISGGQARRLTIGVEIINLPGM--IFLDEPTTGLDSNISYEVMAAVRNLANQ--------------------------------------------NRTVCCTIHQPSIEVFALFDKLILMAKGEQVYFG-ATHEAVKYFSSPALDFAFS--KGVNPAEFVMSASSGS 917          
BLAST of mRNA_S-ischiensis_contig9.20564.1 vs. uniprot
Match: A0A5A7RGC2_STRAF (ABC transporter family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7RGC2_STRAF)

HSP 1 Score: 127 bits (318), Expect = 2.840e-30
Identity = 97/252 (38.49%), Postives = 129/252 (51.19%), Query Frame = 1
Query:    1 GGVLVDGRAPSAAFLRERAAYVTQEDVHAAELTPREALEFAAKLRMGRGSSRAEHTACVDAVLRRLALLPCADQRIGDALARGVSGGQRKRLSIGCGIIGLADLRLLFLDEPTTGLDSGAALRVLQTVRALARAPAGSGPGIPGPGSVGPLGGPGFSAGPAPGPGGRXXXXXXXXXPPQLVVLATVHQPSPELFALFDRVLVLAEGRQVYYGPAGAAAADYFSGPALGHLFRCPPGRNPAEFVLSVAQGAEP 756
            G V  +GR P +  +R R  +V+Q+DV    LT  E L F A LR+ +  S A      D V+  L L  C +  IG  L RG+SGG+RKR+SIG  +  L D  LL LDEPT+GLDS  A R+L TV+ LA                                GGR              V+ T+HQPS  L+ +FD++++L+EGR +YYG A AAA DYFS  ++G  F      NPA+F+L +A G  P
Sbjct:  102 GKVTYNGR-PFSGPIRRRTGFVSQDDVLYPHLTVFETLLFTALLRLPQSLSPAHKAHQADRVVAELGLARCRNSIIGGPLLRGISGGERKRVSIGQEL--LIDPSLLLLDEPTSGLDSTTAHRILATVKGLAA-------------------------------GGR-------------TVITTIHQPSSRLYHMFDKLVLLSEGRPIYYG-AAAAALDYFS--SVG--FSVSVAVNPADFLLDLANGIGP 301          
BLAST of mRNA_S-ischiensis_contig9.20564.1 vs. uniprot
Match: A0A7J6NSQ2_PEROL (ABC transporter domain-containing protein n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6NSQ2_PEROL)

HSP 1 Score: 123 bits (309), Expect = 8.370e-30
Identity = 87/250 (34.80%), Postives = 121/250 (48.40%), Query Frame = 1
Query:    1 GGVLVDGRAPSAAFLRERAAYVTQEDVHAAELTPREALEFAAKLRMGRGSSRAEHTACVDAVLRRLALLPCADQRIGDALARGVSGGQRKRLSIGCGIIGLADLRLLFLDEPTTGLDSGAALRVLQTVRALARAPAGSGPGIPGPGSVGPLGGPGFSAGPAPGPGGRXXXXXXXXXPPQLVVLATVHQPSPELFALFDRVLVLAEGRQVYYGPAGAAAADYFSGPALGHLFRCPPGRNPAEFVLSVAQGA 750
            G V  +G+       R   AYV Q+D   A  TPRE LE +A+LRM       E  A V  +L  L L PC D  +G+ + +G+SGG+RKR S+G  +I  +  +++FLDEP +GLDS AA+  ++ ++ LAR+                                             + V+ TVHQPS E+F++FD  LV+  G  VY GP      D+F   A     +CPP  NPA+FVLS  Q A
Sbjct:  101 GEVSFNGKVQDPVNFRSHIAYVMQDDHLTATATPREVLEMSARLRM-HDQDEKEIQALVTDLLDSLKLTPCKDTVVGNGVIKGISGGERKRTSVGMELI--SKPQMIFLDEPLSGLDSYAAVTTMKVLKELARS--------------------------------------------GVAVMVTVHQPSSEIFSMFDNTLVICSGMMVYQGPT-TDLKDFFQDNAS---IKCPPDYNPADFVLSELQTA 299          
BLAST of mRNA_S-ischiensis_contig9.20564.1 vs. uniprot
Match: A0A1X6N8G3_9APHY (Uncharacterized protein n=2 Tax=Postia placenta TaxID=104341 RepID=A0A1X6N8G3_9APHY)

HSP 1 Score: 128 bits (321), Expect = 8.450e-30
Identity = 88/237 (37.13%), Postives = 124/237 (52.32%), Query Frame = 1
Query:   52 RAAYVTQEDVHAAELTPREALEFAAKLRMGRGSSRAEHTACVDAVLRRLALLPCADQRIGDALARGVSGGQRKRLSIGCGIIGLADLRLLFLDEPTTGLDSGAALRVLQTVRALARAPAGSGPGIPGPGSVGPLGGPGFSAGPAPGPGGRXXXXXXXXXPPQLVVLATVHQPSPELFALFDRVLVLAEGRQVYYGPAGAAAADYFSGPALGHLFRCPPGRNPAEFVLSVAQGAEPPL 762
            R  +V Q+D+    L+ REAL FAA+LR+      AE  A VDAV+ +L L    D  IGD   RG+SGG+ +R+SIG  ++   D+  L LDEPT+GLDS +A +V + + ALA  P                                              V+A++HQPS +LF  FDR+L+LA GR +YYG  G A A++FSG  + +    P G N A+++L VA  ++PPL
Sbjct:  445 RVGFVPQQDILPHTLSVREALLFAAELRLPESIPHAEKLARVDAVIDQLGLSHIRDMHIGDGEKRGISGGEMRRVSIGLELVARPDI--LILDEPTSGLDSVSAKKVTEVLAALAHDPQNP-----------------------------------------TAVIASIHQPSSQLFQTFDRILLLAHGRALYYGKGGLAPAEHFSGQGIPY----PNGYNVADYLLDVA--SDPPL 632          
BLAST of mRNA_S-ischiensis_contig9.20564.1 vs. uniprot
Match: A0A2K3CSN3_CHLRE (ABC transporter domain-containing protein n=5 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3CSN3_CHLRE)

HSP 1 Score: 126 bits (316), Expect = 2.670e-29
Identity = 94/256 (36.72%), Postives = 125/256 (48.83%), Query Frame = 1
Query:    1 GGVLVDGRAPSAAFLRERAAYVTQEDVHAAELTPREALEFAAKLRMGRGSSRAEHTACVDAVLRRLALLPCADQRIGDALARGVSGGQRKRLSIGCGIIGLADLRLLFLDEPTTGLDSGAALRVLQTVRALARAPAGSGPGIPGPGSVGPLGGPGFSAGPAPGPGGRXXXXXXXXXPPQLVVLATVHQPSPELFALFDRVLVLAEGRQVYYGPAGAAAADYFSGPALGHLFR-----CPPGRNPAEFVLSVAQGAE 753
            G +   G  PSAA+ R+   YV Q D     LT RE L + A+L+   G   A+  A VD +L  LAL  CA  RIG   ARG+SGGQ KR +I   +I   D R+LFLDEPTTGLDS  A  V+ TV+ALAR                               GG             + V+AT+H P+   F+LFD+++++A GR VY+G   A+A  YF       L +       PG N AEF++ +   A+
Sbjct:  103 GELRFSGVRPSAAYQRKHTGYVEQFDTLLPILTVREMLLYTAELKRPLGEPLADKKAAVDQLLDALALTRCAGVRIGSPEARGISGGQAKRTNIAIALI--TDPRVLFLDEPTTGLDSYTANEVMLTVQALAR-------------------------------GG-------------VTVVATIHSPTAFCFSLFDKLMMMASGRTVYFGAQDASAVSYFQRTCTSVLGQDVEALAGPGSNSAEFLVDIITEAD 312          
BLAST of mRNA_S-ischiensis_contig9.20564.1 vs. uniprot
Match: A0A7S4DHM8_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DHM8_9EUKA)

HSP 1 Score: 123 bits (309), Expect = 2.820e-29
Identity = 86/251 (34.26%), Postives = 125/251 (49.80%), Query Frame = 1
Query:    1 GGVLVDGRAPSAAFLRERAAYVTQEDVHAAELTPREALEFAAKLRMGRGSSRAEHTACVDAVLRRLALLPCADQRIGDALARGVSGGQRKRLSIGCGIIGLADLRLLFLDEPTTGLDSGAALRVLQTVRALARAPAGSGPGIPGPGSVGPLGGPGFSAGPAPGPGGRXXXXXXXXXPPQLVVLATVHQPSPELFALFDRVLVLAEGRQVYYGPAGAAAADYFSGPALGHLFRCPPGRNPAEFVLSVAQGAE 753
            G VL +G+A + A   +  AYV QE+   A  TPREAL F+A +R+ + +S  E    V+ +L  L L  CAD  IG  L +G+SGG++KR SIG  +I     +++FLDEPT+GLD+ +A    + ++ L +                     G S                        V+ T+HQPS E+F LFD+ L++  G  VY+G      A YF   +LG  + CPP  NPA+ V+ + Q  E
Sbjct:  117 GSVLANGQAVNPAKFAKNIAYVMQEEALFATATPREALHFSAAMRLPQNTSIEERNELVEGLLMDLDLTKCADTLIGSVLIQGISGGEKKRTSIGVELI--TQPKIIFLDEPTSGLDTYSAFNACEILKKLCKR--------------------GCS------------------------VVCTIHQPSSEIFHLFDKTLLIQSGYIVYHGAVNDMPA-YFD--SLGEKYACPPNYNPADHVMFLMQAKE 318          
BLAST of mRNA_S-ischiensis_contig9.20564.1 vs. uniprot
Match: A0A833VF75_9POAL (ABC transporter G family member 11-like protein n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833VF75_9POAL)

HSP 1 Score: 125 bits (315), Expect = 4.290e-29
Identity = 93/244 (38.11%), Postives = 126/244 (51.64%), Query Frame = 1
Query:    1 GGVLVDGRAPSAAFLRERAAYVTQEDVHAAELTPREALEFAAKLRMGRGSSRAEHTACVDAVLRRLALLPCADQRIGDALARGVSGGQRKRLSIGCGIIGLADLRLLFLDEPTTGLDSGAALRVLQTVRALARAPAGSGPGIPGPGSVGPLGGPGFSAGPAPGPGGRXXXXXXXXXPPQLVVLATVHQPSPELFALFDRVLVLAEGRQVYYGPAGAAAADYFSGPALGHLFRCPPGRNPAEFVL 732
            G VL++GR    +F    AAYVTQ+D     LT RE + ++A+LR+    S  E  A V+  +  + L  CAD  IG+   RGVSGG+++R+SI   I  L   RLLFLDEPT+GLDS +A  V QT+RALAR                                GR              V+A+VHQPS E+F LFD + +L+ G+ VY+G A + A ++F        F CPP RNP++  L
Sbjct:  102 GSVLLNGRKTKLSF--GTAAYVTQDDTLIGTLTVREMISYSARLRLSNKMSCEEKRALVEGTISEMGLQDCADTMIGNWHLRGVSGGEKRRVSIALEI--LMRPRLLFLDEPTSGLDSASAFFVTQTLRALAR-------------------------------DGR-------------TVIASVHQPSSEVFELFDHLYLLSGGKSVYFGQA-SEACEFFDQAG----FPCPPLRNPSDHFL 292          
BLAST of mRNA_S-ischiensis_contig9.20564.1 vs. uniprot
Match: A0A7J6R577_PEROL (Nitric oxide associated protein 1 n=2 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6R577_PEROL)

HSP 1 Score: 126 bits (316), Expect = 4.460e-29
Identity = 92/254 (36.22%), Postives = 128/254 (50.39%), Query Frame = 1
Query:    1 GGVLVDGRAPSAAFLRERAAYVTQEDVHAAELTPREALEFAAKLRMGRGSSRAEHTACVDAVLRRLALLPCADQRIGDALARGVSGGQRKRLSIGCGIIGLADLRLLFLDEPTTGLDSGAALRVLQTVRALARAPAGSGPGIPGPGSVGPLGGPGFSAGPAPGPGGRXXXXXXXXXPPQLVVLATVHQPSPELFALFDRVLVLAEGRQVYYGPAGAAAADYFSGPALGHL-FRCPPGRNPAEFVLSVAQGAEPP 759
            G V++DG+  + +  RE  AYV QED   +  TPRE LEF+A L++ +G  + E    VD +L  L L  C +  +G+ L RG+SGG+RKR SIG  +I      ++FLDEP TGLDS AA+   + +R LA+                                              + VL TVHQPS E+F LFDRV+++ EG+  Y+GP  A+ +D+F    + H    CPP  N  +F L   Q  EPP
Sbjct: 1694 GVVMLDGQPMAPSKFRESIAYVMQEDALVSTSTPREILEFSATLKLNKG--KREIKTIVDDMLEYLRLSSCQNTMVGNQLTRGISGGERKRTSIGVELI--TQPSMIFLDEPLTGLDSYAAVTTSRVLRGLAKR--------------------------------------------GVTVLMTVHQPSSEVFELFDRVMIINEGQIAYHGPR-ASLSDFF----VKHAGLNCPPHHNFGDFALYTLQ-TEPP 1893          
BLAST of mRNA_S-ischiensis_contig9.20564.1 vs. uniprot
Match: A0A7J6S7V5_PEROL (ABC transporter domain-containing protein (Fragment) n=4 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6S7V5_PEROL)

HSP 1 Score: 125 bits (313), Expect = 4.490e-29
Identity = 88/250 (35.20%), Postives = 122/250 (48.80%), Query Frame = 1
Query:    1 GGVLVDGRAPSAAFLRERAAYVTQEDVHAAELTPREALEFAAKLRMGRGSSRAEHTACVDAVLRRLALLPCADQRIGDALARGVSGGQRKRLSIGCGIIGLADLRLLFLDEPTTGLDSGAALRVLQTVRALARAPAGSGPGIPGPGSVGPLGGPGFSAGPAPGPGGRXXXXXXXXXPPQLVVLATVHQPSPELFALFDRVLVLAEGRQVYYGPAGAAAADYFSGPALGHLFRCPPGRNPAEFVLSVAQGA 750
            G V  +G+       R   AYV Q+D   A  TPRE LE +A+LRM       E  A V  +L  L L PC D  +G+ + +G+SGG+RKR S+G  +I  +  +++FLDEP +GLDS AA+  ++ ++ LAR+                                             + V+ TVHQPS E+F++FD  LV+  G  VY GP  A   D+F   A     +CPP  NPA+FVLS  Q A
Sbjct:  101 GEVSFNGKVQDPVNFRSHIAYVMQDDHLTATATPREVLEMSARLRM-HDQDEKEIQALVTDLLDSLKLTPCKDTVVGNGVIKGISGGERKRTSVGMELI--SKPQMIFLDEPLSGLDSYAAVTTMKVLKELARS--------------------------------------------GVAVMVTVHQPSSEIFSMFDNTLVICSGMMVYQGPT-ADLKDFFQDNAS---IKCPPDYNPADFVLSELQTA 299          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKK8_9PHAE8.240e-3542.11ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
W7TLH8_9STRA1.230e-3140.00Abc transporter g family member 29 n=2 Tax=Monodop... [more]
A0A5A7RGC2_STRAF2.840e-3038.49ABC transporter family protein n=1 Tax=Striga asia... [more]
A0A7J6NSQ2_PEROL8.370e-3034.80ABC transporter domain-containing protein n=2 Tax=... [more]
A0A1X6N8G3_9APHY8.450e-3037.13Uncharacterized protein n=2 Tax=Postia placenta Ta... [more]
A0A2K3CSN3_CHLRE2.670e-2936.72ABC transporter domain-containing protein n=5 Tax=... [more]
A0A7S4DHM8_9EUKA2.820e-2934.26Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A833VF75_9POAL4.290e-2938.11ABC transporter G family member 11-like protein n=... [more]
A0A7J6R577_PEROL4.460e-2936.22Nitric oxide associated protein 1 n=2 Tax=Perkinsu... [more]
A0A7J6S7V5_PEROL4.490e-2935.20ABC transporter domain-containing protein (Fragmen... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1428191..1432838 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score140.2
Seed ortholog evalue1.4e-30
Seed eggNOG ortholog40149.OMERI02G28630.1
GOsGO:0001101,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005623,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0008150,GO:0009719,GO:0009725,GO:0009737,GO:0010033,GO:0010876,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015850,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0031224,GO:0033036,GO:0033993,GO:0042221,GO:0042623,GO:0042626,GO:0043492,GO:0044425,GO:0044464,GO:0046864,GO:0046865,GO:0046942,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071944,GO:0080168,GO:0097305,GO:1901700
EggNOG free text desc.ABC-2 type transporter
EggNOG OGs37SCS@33090,3GGG8@35493,3IC07@38820,3KWU0@4447,COG1131@1,KOG0061@2759
COG Functional cat.Q
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size799
Cds size798
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20564.1prot_S-ischiensis_contig9.20564.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1428191..1432838 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817385.9065583-CDS-S-ischiensis_contig9:1428190..14283641622817385.9065583-CDS-S-ischiensis_contig9:1428190..1428364Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1428191..1428364 -
1695741074.3783758-CDS-S-ischiensis_contig9:1428190..14283641695741074.3783758-CDS-S-ischiensis_contig9:1428190..1428364Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1428191..1428364 -
1622817385.920028-CDS-S-ischiensis_contig9:1429547..14300191622817385.920028-CDS-S-ischiensis_contig9:1429547..1430019Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1429548..1430019 -
1695741074.3944364-CDS-S-ischiensis_contig9:1429547..14300191695741074.3944364-CDS-S-ischiensis_contig9:1429547..1430019Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1429548..1430019 -
1622817385.934616-CDS-S-ischiensis_contig9:1431129..14312091622817385.934616-CDS-S-ischiensis_contig9:1431129..1431209Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1431130..1431209 -
1695741074.4090664-CDS-S-ischiensis_contig9:1431129..14312091695741074.4090664-CDS-S-ischiensis_contig9:1431129..1431209Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1431130..1431209 -
1622817385.948599-CDS-S-ischiensis_contig9:1432766..14328381622817385.948599-CDS-S-ischiensis_contig9:1432766..1432838Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1432767..1432838 -
1695741074.4208913-CDS-S-ischiensis_contig9:1432766..14328381695741074.4208913-CDS-S-ischiensis_contig9:1432766..1432838Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1432767..1432838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20564.1

>prot_S-ischiensis_contig9.20564.1 ID=prot_S-ischiensis_contig9.20564.1|Name=mRNA_S-ischiensis_contig9.20564.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=266bp
GGVLVDGRAPSAAFLRERAAYVTQEDVHAAELTPREALEFAAKLRMGRGS
SRAEHTACVDAVLRRLALLPCADQRIGDALARGVSGGQRKRLSIGCGIIG
LADLRLLFLDEPTTGLDSGAALRVLQTVRALARAPAGSGPGIPGPGSVGP
LGGPGFSAGPAPGPGGRRRRGGGRGGPPQLVVLATVHQPSPELFALFDRV
LVLAEGRQVYYGPAGAAAADYFSGPALGHLFRCPPGRNPAEFVLSVAQGA
EPPLPPSARGKTRGGE
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mRNA from alignment at S-ischiensis_contig9:1428191..1432838-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20564.1 ID=mRNA_S-ischiensis_contig9.20564.1|Name=mRNA_S-ischiensis_contig9.20564.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4648bp|location=Sequence derived from alignment at S-ischiensis_contig9:1428191..1432838- (Schizocladia ischiensis KU_0333)
GGAGGGGTGCTGGTCGACGGGCGAGCGCCCAGCGCGGCCTTCCTGCGCGA GCGGGCGGCGTACGTGACGCAGGCAGGTCCACTCCCGTGATGGAATATTG ATCAGTACTGTAGATAGTTTTCGGGCTCAACTGATTTTGTGGGTGACGTT ACTAGCTACTTGGATTTAGCATGGGTCAAACTATCAAGTATCGACTATCG ATAAACTAAAATCAGTACTGTCGATAAATCGGTCAATTTGCTTAGATATT CCATCACTGACGCAGGCAGGTCCACCACTCCCGTCTCCAACAGTGTGATG TGATGTGATGTCAAACTACAGTACATTAGAGTAGGGACCGCATCATCACA TCACACCCTTTCAGTATGATGTGATGTGAGGAAACAAGTAGTCTCTCAGG AGCTAGCAGCATCGGTAGCTTGGCAGAGAGACCCAGAAGGCTAGTCGTAG CTGCAGGGGAGCCAAAAGAAGTGGCCCATCATGCAAATGGCTCGACAATG TGATGTGTATCCCAAAGCGCTGTGCTGTGCAATTGTTTGTTGTCGAGAAG CATGAAATCGTGAGTGCGGCCTTTGCTGCGTGAGCGGCCGGGGTAGGTAC GGGGCGCGGGCGGGCGTGTGTCCGTCCGTCTCCACGGGCGTGTGGCGTGA TGCGATGTGATGCGATGTGATGTGATGCGATGTGATGTGATGTGATGTGA TGCGGTGTGATGCGATGTGATGTGATGTGGTGTGATGCGATGTGATGTGA TGCGGTGTGATGTGATGTGATGCGATGTGACGTGATGTGATGCGGTGCGG TGCGGTGCGGGGCGATTCCAGAGGGCAGCTGTATCGTCACGTCACATCGA GCCAGTTTTTACGTCATCATGCAAACGTGACGGGATGCGTACCGTACTCT CAGCTTTCTTGTGAGTGAGTACTTGACATCGCATCAATTCGACGTCATGA TGTGGCCTGCACGTTGAGAAATGGCCACAACCTACAATCGGGTGTCTCCC AAAAGACGTCTCCGGGGACATCCTAGCCTACGTGTACTCTCCAGCACCAA CAACGTGAAACATAGGACTGTTTGGCATACTTCGAAGTACATGTATATAT GTACTCACGTGGTGCTTGCCGTAGTCCCGAGACCGTTGACCCCGCGCCTC GTTCGAGGCGGAGCAGGACCCCTCCCTCCCCTGGCAAAGCCAGGGTGGGA GAGGGTCTAACAGGAAGTAAAGATCAACCCAACACGAGGATTCCGTCCCG CAACCTGGCAAAAGAGACCGCCCCCACCTACTGTTTTTCCCCTGCGAGTG AAAGACCGCGTAAATTAGCTTCCGTGAGGTTTCCAAGTTTGGGTACGGGG CCCGCAACGCGCTTGTGTGCTTTCGCCGCAAACACTATACTCCGAAGCAC TTGAGTACTCGAGTACCGTAGTCACTAGTACGAGAACACTCCAATCCTTA AATGGGACTAGTACTGTACTAATATGAGAACAGTCAATCTCACATACGTG CGATTGTACCTCGTTACAATTTATGCGAATCACTACTGTAGTCTGATGTC GCATAGCATCACATCACTTGGCAACGCATTGCATTGCATCACATTGCATC GCATCGCATCGCCCGTGACGAACGAGCAGGAGGACGTGCACGCGGCGGAG CTAACCCCGCGCGAGGCGCTAGAGTTCGCCGCAAAGCTGAGGATGGGCCG GGGCTCCAGGTGCGTGATTCATATCAATTGTTACAAGGTACAATCTCACG TGTGTGAGATTGACTGTTCTCGTATTAGTAGTAGTCCCATTTCAGGATTG GATGTTCTCGTATTAGTTTTGTTAGAGTTCGCCGTCAAGCTGAGGATGGG CCGGGGCTTCAGGTGAGGCTTGATGGAATATCTAAGCAAATCAACCCATT TATCGACAGTTCTGATCTATACATCTATCGATAGAGCTCTAGCCGATATT CGATAGTTTGACCAGCACCACATCCGAGTAGGTAGTAACGCCGCCCACAA ATCCAGTCGAGCGCGAGAACTATCTACTGACCGATATTCCATCACTTCAG GTGAGGCGTGCGCGTGGGCGGGCGGAACAGAACAGAGGGCTGGAACCCAC ACCGCACACGCAAGACCCAACCTTCCTTCTTTAGCTATTGTGATGGTATT CGAGTTCCGGGCCCCATCCCGACAACCTAAGGGGGGGACCTCACCAGCAG CCCTTCTTTTCATCCTTTTTTGACGCCTCCATCAATCAAAGTTTTGTTCC TGCCAACCCCCCAGGCCCCGCCCCCCGCAGCCGCAGGGAGCTGAAACCCC CCTGCATGGATGCCTTCTTACACTTGGCCCGTCGTCGACCCATATCTTCC GCCCGCCAAACCCTTCCCTGGAGGCAAATGCGCTCCGCCTGCCCCGTCGC CAACTGGCCACAGAACTCGCCGAGCCCTCCCGGCCAATAAGAAAACTCAG TAATTAAATGGGATAACTACTAGTACGAGAACACTCATTCTCGCACGTGC GATTGTACGTCGTTACAATTTATATGAATCACCGCCGAAACCGTCCGCCC GGTCAATTCAACCCCCCGCAGCGGCGCGGAACACGCCGCCTGCGTGGACG CCGTCCTGCGCCGGCTCGCCCTCTTCCGGCCAGTGAGCTGCGCCGAAACC GTCCCGCCCAATCAATTCAACCCCCTCCCCCTCCCGCAGCCGCGCGGAAC ACGCCGCCTGCGTGGGCGCCGTCCTCCGCCCGGCTCGCCCTCTCCCGGCC AATGAGCTTCGCCCGCCCAAACCGTCCGACCAATAACATTGAACGCCACC CCCCCCCCCCCCTCCTCAGCCGCGCGGAACACACCGCCTGCGTGGACGCC GTGCTCCGCCGGCTGGCCCTCCTCCCCTGCGCCGACCAGCGCATCGGCGA TGCCCTCGCCCGCGGCGTCAGCGGCGGCCAGCGCAAACGCCTGTCCATCG GCTGTGGCATCATTGGCCTCGCCGACCTCCGCCTCCTCTTCCTCGACGAG CCCACCACCGGCCTGGACTCCGGGGCCGCCCTCCGCGTGCTGCAGACCGT CCGGGCCCTGGCCCGCGCCCCGGCCGGCAGTGGGCCCGGGATACCTGGGC CCGGGTCTGTGGGCCCACTTGGTGGGCCCGGGTTTTCCGCGGGCCCAGCA CCCGGGCCCGGGGGAAGAAGGCGTAGGGGTGGGGGGCGGGGCGGGCCACC GCAGCTGGTGGTGCTGGCGACGGTGCACCAGCCGTCCCCGGAGCTGTTTG CGCTGTTTGATCGGGTGCTTGTGCTTGCGGAGGGGAGGCAGGCGAGTGGG AAGGCGTTTGGGGGCATGAGTGAGTGGGTTGGTCGGGGCGTTGGGGGCCA TCCATATGATTGTTGGTCGAGGCGATTGTAGGGGTTCAGATGGGTGGACA CGCTGTTGAGGGGCGTGCGTGGCGCTAGAGTGGTGAGTGGCTCGTCTGCC GTGGCCACATATACCATTGGCACTTAACCCCTAAGTGGTGCCCTTTTAGG CCCTTAATTAGAGGTTATTAGGGGCACAGCAATTTGACCTGAAATGAAGG CTAATTAGGCCCTGATTAGCCTCTAAGTGCCAACCCTGTTCTCCCCCTCT TCTTCCTCCCGCTCCTCCTCTAACTAGGGGTAATTTGGCGTAAAATGAAG GCTAGCTACTGCAGGCCCTATTTAGCCCCTAAGTGCCAACCCTGCCGCCA GGTGTAATAGGGGTAATTAGACCAAAAATGAAGGTTAATTCGGCCCTAGT TAGCCTCCAAGTGCCAACCCTGCTGTACCGCCAGGTGTACTACGGCCCTA TATATGTATAGATAGAGGTCATTAGGGGCAATTAGACCAAGAATGAAGGC TGATTAGGCCCTAGTTAACCTCCAAGTGCCAACCCTGCTGTACCGCCAGG TGTACTATGGCCCTATATATGTATAGGTAGAGGTCATTAGGGGTAATTAG ACCAGACATGAAGGCTATTTAGGCCCTAGCTAACCTCCAAGTGCCAACCC TGCTGTACCGCCAGGTGTACTACGGCCCTATATATGTATAGGTAGAGGTC ATTAGGGGTAATTAGACCAGACATGTAGGCTAGTTAGGCCCCAGTTAACC TCCAAATGCCAACCCTGCTGTACCGCCAGGTGTACTACGGCCCTATATAT GTATAGGTAGAGGTCACTAGGGGTAATTAGACCAAAAATGAAGGCTGATT TGGCCCTAGTTAACCTCCAAGTGCCAACCCTGCTGTACCGCCAGGTGCAC TACGGCCCTATATATATATAGGTAGAGGTCATTAGGGGTAATTAGACCAG ACACGAAGGCTAGTTAGGCCCTAGTTAACCTCCAAGTGCCAACCCTGCTG TACCGCCAGGTGTACTACGGCCCTATATATGTATAGGTAGAGGTCACTAG GGGTAATTAGACCAAAAATGAAGGCTGATTTGACCCTAGTTAACCTCCAA GTGCCAACCCTGCTGTACCGCCAGGTGTACTACGGCCCTGCGGGCGCCGC GGCCGCGGACTACTTCTCCGGACCGGCCCTGGGTCACCTCTTCCGCTGCC CCCCGGGCCGCAACCCTGCCGAGTTCGTGCTGTCCGTGGCGCAGGGGGCC GAGCCGCCCCTCCCGCCTTCCGCCCGAGGGAAAACCAGGGGAGGCGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1428191..1432838-

>mRNA_S-ischiensis_contig9.20564.1 ID=mRNA_S-ischiensis_contig9.20564.1|Name=mRNA_S-ischiensis_contig9.20564.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1596bp|location=Sequence derived from alignment at S-ischiensis_contig9:1428191..1432838- (Schizocladia ischiensis KU_0333)
GGAGGGGTGCTGGTCGACGGGCGAGCGCCCAGCGCGGCCTTCCTGCGCGA
GCGGGCGGCGTACGTGACGCAGGGAGGGGTGCTGGTCGACGGGCGAGCGC
CCAGCGCGGCCTTCCTGCGCGAGCGGGCGGCGTACGTGACGCAGGAGGAC
GTGCACGCGGCGGAGCTAACCCCGCGCGAGGCGCTAGAGTTCGCCGCAAA
GCTGAGGATGGGCCGGGGCTCCAGGAGGACGTGCACGCGGCGGAGCTAAC
CCCGCGCGAGGCGCTAGAGTTCGCCGCAAAGCTGAGGATGGGCCGGGGCT
CCAGCCGCGCGGAACACACCGCCTGCGTGGACGCCGTGCTCCGCCGGCTG
GCCCTCCTCCCCTGCGCCGACCAGCGCATCGGCGATGCCCTCGCCCGCGG
CGTCAGCGGCGGCCAGCGCAAACGCCTGTCCATCGGCTGTGGCATCATTG
GCCTCGCCGACCTCCGCCTCCTCTTCCTCGACGAGCCCACCACCGGCCTG
GACTCCGGGGCCGCCCTCCGCGTGCTGCAGACCGTCCGGGCCCTGGCCCG
CGCCCCGGCCGGCAGTGGGCCCGGGATACCTGGGCCCGGGTCTGTGGGCC
CACTTGGTGGGCCCGGGTTTTCCGCGGGCCCAGCACCCGGGCCCGGGGGA
AGAAGGCGTAGGGGTGGGGGGCGGGGCGGGCCACCGCAGCTGGTGGTGCT
GGCGACGGTGCACCAGCCGTCCCCGGAGCTGTTTGCGCTGTTTGATCGGG
TGCTTGTGCTTGCGGAGGGGAGGCAGCCGCGCGGAACACACCGCCTGCGT
GGACGCCGTGCTCCGCCGGCTGGCCCTCCTCCCCTGCGCCGACCAGCGCA
TCGGCGATGCCCTCGCCCGCGGCGTCAGCGGCGGCCAGCGCAAACGCCTG
TCCATCGGCTGTGGCATCATTGGCCTCGCCGACCTCCGCCTCCTCTTCCT
CGACGAGCCCACCACCGGCCTGGACTCCGGGGCCGCCCTCCGCGTGCTGC
AGACCGTCCGGGCCCTGGCCCGCGCCCCGGCCGGCAGTGGGCCCGGGATA
CCTGGGCCCGGGTCTGTGGGCCCACTTGGTGGGCCCGGGTTTTCCGCGGG
CCCAGCACCCGGGCCCGGGGGAAGAAGGCGTAGGGGTGGGGGGCGGGGCG
GGCCACCGCAGCTGGTGGTGCTGGCGACGGTGCACCAGCCGTCCCCGGAG
CTGTTTGCGCTGTTTGATCGGGTGCTTGTGCTTGCGGAGGGGAGGCAGGT
GTACTACGGCCCTGCGGGCGCCGCGGCCGCGGACTACTTCTCCGGACCGG
CCCTGGGTCACCTCTTCCGCTGCCCCCCGGGCCGCAACCCTGCCGAGTTC
GTGCTGTCCGTGGCGCAGGGGGCCGAGCCGCCCCTCCCGCCTTCCGCCCG
AGGGAAAACCAGGGGAGGCGAGGTGTACTACGGCCCTGCGGGCGCCGCGG
CCGCGGACTACTTCTCCGGACCGGCCCTGGGTCACCTCTTCCGCTGCCCC
CCGGGCCGCAACCCTGCCGAGTTCGTGCTGTCCGTGGCGCAGGGGGCCGA
GCCGCCCCTCCCGCCTTCCGCCCGAGGGAAAACCAGGGGAGGCGAG
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