mRNA_S-ischiensis_contig9.20560.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20560.1
Unique NamemRNA_S-ischiensis_contig9.20560.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20560.1 vs. uniprot
Match: A0A7S1V251_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V251_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.960e-6
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:  274 RKQLVELYTRYNPTKLGDVDKLMEKYSANLPVMLQKVRKKYN 399
            RK+L+EL+TRYNP KLG VD L++KY     V+ +K+  KYN
Sbjct:   22 RKKLIELFTRYNPDKLGSVDGLLDKYRGREDVLFKKIDNKYN 63
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BLAST of mRNA_S-ischiensis_contig9.20560.1 vs. uniprot
Match: A0A7S0A709_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A709_9DINO)

HSP 1 Score: 51.6 bits (122), Expect = 1.420e-5
Identity = 22/41 (53.66%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:  274 RKQLVELYTRYNPTKLGDVDKLMEKYSANLPVMLQKVRKKY 396
            R +LVE+YT++NP+KLG++DKL+EKY      + +KV KKY
Sbjct:   69 RDRLVEIYTQHNPSKLGEIDKLLEKYKGQETTLYEKVCKKY 109
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BLAST of mRNA_S-ischiensis_contig9.20560.1 vs. uniprot
Match: D7FXZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ7_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 7.370e-5
Identity = 19/42 (45.24%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:  274 RKQLVELYTRYNPTKLGDVDKLMEKYSANLPVMLQKVRKKYN 399
            R Q++E+Y +YNP+KLG+VD +++KY+     +++K++KKYN
Sbjct:   33 RGQVLEIYNKYNPSKLGEVDTILKKYAGREATLIEKLKKKYN 74
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S1V251_9STRA2.960e-654.76Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S0A709_9DINO1.420e-553.66Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
D7FXZ7_ECTSI7.370e-545.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1394106..1396621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_004490.1
Exons3
Model size401
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20560.1prot_S-ischiensis_contig9.20560.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1394106..1396619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817365.9658642-CDS-S-ischiensis_contig9:1394105..13943401622817365.9658642-CDS-S-ischiensis_contig9:1394105..1394340Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1394106..1394340 +
1695741059.9334612-CDS-S-ischiensis_contig9:1394105..13943401695741059.9334612-CDS-S-ischiensis_contig9:1394105..1394340Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1394106..1394340 +
1622817365.9779644-CDS-S-ischiensis_contig9:1395304..13954221622817365.9779644-CDS-S-ischiensis_contig9:1395304..1395422Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1395305..1395422 +
1695741059.9521303-CDS-S-ischiensis_contig9:1395304..13954221695741059.9521303-CDS-S-ischiensis_contig9:1395304..1395422Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1395305..1395422 +
1622817365.9924686-CDS-S-ischiensis_contig9:1396573..13966191622817365.9924686-CDS-S-ischiensis_contig9:1396573..1396619Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1396574..1396619 +
1695741059.9698844-CDS-S-ischiensis_contig9:1396573..13966191695741059.9698844-CDS-S-ischiensis_contig9:1396573..1396619Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1396574..1396619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20560.1

>prot_S-ischiensis_contig9.20560.1 ID=prot_S-ischiensis_contig9.20560.1|Name=mRNA_S-ischiensis_contig9.20560.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=133bp
PAPAAPTSSLFGMGALGAAAAAGAPAPAPSLGGFGAGTGPAPAPAAPAAA
PGGGFLSFGSSFGAALGAPAPAPAAASAGLGAAPALTVAEARKQLVELYT
RYNPTKLGDVDKLMEKYSANLPVMLQKVRKKYN
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mRNA from alignment at S-ischiensis_contig9:1394106..1396621+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20560.1 ID=mRNA_S-ischiensis_contig9.20560.1|Name=mRNA_S-ischiensis_contig9.20560.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2516bp|location=Sequence derived from alignment at S-ischiensis_contig9:1394106..1396621+ (Schizocladia ischiensis KU_0333)
CCCGCGCCCGCTGCTCCCACGTCCTCCCTGTTTGGCATGGGTGCTTTGGG
GGCGGCGGCGGCGGCGGGTGCTCCCGCCCCTGCCCCGTCTCTGGGCGGGT
TTGGTGCCGGGACGGGCCCGGCGCCTGCCCCGGCGGCCCCGGCCGCAGCC
CCCGGCGGCGGGTTCTTGAGCTTTGGGAGTTCGTTCGGGGCTGCGCTGGG
TGCTCCGGCGCCTGCACCGGCTGCTGCTTCGGCAGGTGAGGGGTGCTTTC
GACTTGAGAAACCGTTTCTCGTGTGTGCGTGCGTGCGTGTGTGTGGAGGG
GGGGCGTGTGTGGCGTGTGGTGTAACGTGATGTGGTGTCAGAACTGCGGC
TGTACGGCGCATCAGGAGTGCACAATACGCTAGGTATGTCATGGTCGCCT
TGGGCATTCGTCCACGCCCCCGGACAAGGTGACGGGAGCGGGCGAGCGTT
CAGTTTTCGTCTCCCCCCCCGCCCTTTTTGTTGTTTATATGGTCAATGGT
CTCGGGACTACCGTAATCGTCGGAGAGATTTTGCCCCCGCAGGACAATTT
TCGGGGGAATGTTTCTAGCCGGGAACGTCCCCCAGGTCCTGAGGGAGATT
TTCGGAGTTCTCCCGCGCGAAAATCCGACCAGTATTCGGCGAGAAACATT
CTCCCGAAAATTGGCATGGGGGGGCAAGATCTCTCCGACGAATACGGTGT
GTGATGTGATGTGTACTCTAATGCACTGTAGTTTGACATCACATCACATC
ACTTGAAGATCTCTCCGACGGTTACGGTACTCTATATGTGGTGTTCGGTT
GCCTTTGGCATGCGTCGACGCCCCGAAACGGTGACGCACTGACGTGATTT
TCTCCTACCTGTGTTTTGCGAATGGCATCCCCGGCAGTGGTGCAACCCCA
AAGTTCTGTCGGCGAAATAATCGGGGGCTCCGTCCAATAGGACGCGTGGC
CCATGGCGAAAGCTACAGCTGGCCAGCGATCCCGCGAGAGGGAGCAAAGA
CATGGGTCGTTCGGGGCCAGGGCATGCACAGAGACGAGAAACCTCGCCCG
AACATGTGTGTTTACACCTGCGTTTTGCACAGAGACGAGAAACCTCATCC
GAACGTGAACAGAGACGAGAAACCTCGTCCAGGGCATGCACAGAGACGAG
AAACCTCGTCCGAACATGAGCACCCACCCGTGTTTTGCGCCTGGCCCAGG
GCTGGGGGCGGCGCCTGCATTGACGGTGGCGGAGGCGAGGAAGCAGCTGG
TGGAGCTGTACACGCGCTACAACCCCACGAAGCTTGGGGACGTCGACAAG
CTCATGGAGAAGTACAGGTCAGATGTGTTGAGTTGCTCGTAGTAGATTGA
TGTGATGTGATGTCAGACTACAGCACATTAGAGTGACCATCACATAAGTG
TTACTCGTAGAGATTGATGCGATGTGATGTCAAACTACAGCACATTAGAT
TGAACATCACATCACATCGCATCACGTCACAAATGCCGAAGAACATGTTC
ACAGATGAGGACGTGGGGGCGCGGGAGGAGGGGCTGAAGAGAGAGGGCGG
AGGGGGGGAGTAAGAAGAGGGGGAGAAGAGAGAGAAGAAGGCGGGGGGGG
GGAGGGGGCGGGAGGGAGGGAGCAAGGGGAGGGGGGACAGGAGAAGAGGG
AGAGACTAGGGAGGGGGCGGAAGGGGGGGCGAGAGAGGGAGAGAGAGAGA
GGGGGAGAAAGAGAGAGAGAGAGAGGGGGGGGAGATGGGTAGGTGGGGAG
GGCGTGAGGAGGGGGACTCGATGAGTTGCATAGGCGTATGACCACTGATA
TCAGCGAGATCGATTTCGTCCAGGGGACGGAGCCCTGTGTTCTCTCTGCT
TGTCGGGGAGACTGGCTGCACTTCTCTCTTGTTTGACTCTGTCATGGCCA
CTGGTAAGACTAGTACACACAAAGGCTTGGGGAGGGCAGGAGGAGGGGGG
GGACAGGGGGGGGGGGTGCGAGGGATAGAGAACCCGAAGCCTAACATCGT
TTTCCCAGCCCTGTCTTGAGATTCTCTCGATCGACACAAACCCGGTCGAC
CAATCACACCGGCCGGCCCGAGCACTCGGCCAATTAACCCTTTTACCCCT
GGTAAGGTGGGCTTAACACACTAAAACCCTATGATTATATGGACCCCCGG
GGTAAAAGGGTTAGCAAGCGATGGCTGCTCGTGCGATCATCTCGACCGAC
GAATTCGACTGACGCGGGTCCTCTCCCCCAAGCACGCCGGCCGACCCGCA
CCCGCACGCACACACCGGCCAATCATCGGCTCACGAGTCCCGCACTCATA
CTTGAGTACGTCGAATTATATATATATATACATGTACTCACGTTGTGCTT
GCCGTAGTCCCGAGACTATTGACCACGCGCCTCGGTCGAGACGGAGCAGT
ACAGTACGTACACAGCCCAAGCCCCTCAACCGCCCTGTGCCCTCCCCCCG
CCCACCCACCCTCGACAGCGCCAACCTCCCCGTCATGCTCCAGAAAGTCC
GCAAGAAGTACAACGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1394106..1396621+

>mRNA_S-ischiensis_contig9.20560.1 ID=mRNA_S-ischiensis_contig9.20560.1|Name=mRNA_S-ischiensis_contig9.20560.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=798bp|location=Sequence derived from alignment at S-ischiensis_contig9:1394106..1396621+ (Schizocladia ischiensis KU_0333)
CCCGCGCCCGCTGCTCCCACGTCCTCCCTGTTTGGCATGGGTGCTTTGGG
GGCGGCGGCGGCGGCGGGTGCTCCCGCCCCTGCCCCGTCTCTGGGCGGGT
TTGGTGCCGGGACGGGCCCGGCGCCTGCCCCGGCGGCCCCGGCCGCAGCC
CCCGGCGGCGGGTTCTTGAGCTTTGGGAGTTCGTTCGGGGCTGCGCTGGG
TGCTCCGGCGCCTGCACCGGCTGCTGCTTCGGCAGCCCGCGCCCGCTGCT
CCCACGTCCTCCCTGTTTGGCATGGGTGCTTTGGGGGCGGCGGCGGCGGC
GGGTGCTCCCGCCCCTGCCCCGTCTCTGGGCGGGTTTGGTGCCGGGACGG
GCCCGGCGCCTGCCCCGGCGGCCCCGGCCGCAGCCCCCGGCGGCGGGTTC
TTGAGCTTTGGGAGTTCGTTCGGGGCTGCGCTGGGTGCTCCGGCGCCTGC
ACCGGCTGCTGCTTCGGCAGGGCTGGGGGCGGCGCCTGCATTGACGGTGG
CGGAGGCGAGGAAGCAGCTGGTGGAGCTGTACACGCGCTACAACCCCACG
AAGCTTGGGGACGTCGACAAGCTCATGGAGAAGTACAGGGCTGGGGGCGG
CGCCTGCATTGACGGTGGCGGAGGCGAGGAAGCAGCTGGTGGAGCTGTAC
ACGCGCTACAACCCCACGAAGCTTGGGGACGTCGACAAGCTCATGGAGAA
GTACAGCGCCAACCTCCCCGTCATGCTCCAGAAAGTCCGCAAGAAGTACA
ACCGCCAACCTCCCCGTCATGCTCCAGAAAGTCCGCAAGAAGTACAAC
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