mRNA_S-ischiensis_contig9.20559.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20559.1
Unique NamemRNA_S-ischiensis_contig9.20559.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1382993..1389524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size658
Cds size657
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20559.1prot_S-ischiensis_contig9.20559.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1382993..1389524 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817365.8604467-CDS-S-ischiensis_contig9:1382992..13830831622817365.8604467-CDS-S-ischiensis_contig9:1382992..1383083Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1382993..1383083 +
1695741059.8574455-CDS-S-ischiensis_contig9:1382992..13830831695741059.8574455-CDS-S-ischiensis_contig9:1382992..1383083Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1382993..1383083 +
1622817365.8730855-CDS-S-ischiensis_contig9:1383578..13836551622817365.8730855-CDS-S-ischiensis_contig9:1383578..1383655Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1383579..1383655 +
1695741059.8724-CDS-S-ischiensis_contig9:1383578..13836551695741059.8724-CDS-S-ischiensis_contig9:1383578..1383655Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1383579..1383655 +
1622817365.8857014-CDS-S-ischiensis_contig9:1384938..13850271622817365.8857014-CDS-S-ischiensis_contig9:1384938..1385027Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1384939..1385027 +
1695741059.8902984-CDS-S-ischiensis_contig9:1384938..13850271695741059.8902984-CDS-S-ischiensis_contig9:1384938..1385027Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1384939..1385027 +
1622817365.9001913-CDS-S-ischiensis_contig9:1385748..13858451622817365.9001913-CDS-S-ischiensis_contig9:1385748..1385845Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1385749..1385845 +
1695741059.9020493-CDS-S-ischiensis_contig9:1385748..13858451695741059.9020493-CDS-S-ischiensis_contig9:1385748..1385845Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1385749..1385845 +
1622817365.9154048-CDS-S-ischiensis_contig9:1388018..13881741622817365.9154048-CDS-S-ischiensis_contig9:1388018..1388174Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1388019..1388174 +
1695741059.9128325-CDS-S-ischiensis_contig9:1388018..13881741695741059.9128325-CDS-S-ischiensis_contig9:1388018..1388174Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1388019..1388174 +
1622817365.9305422-CDS-S-ischiensis_contig9:1389377..13895241622817365.9305422-CDS-S-ischiensis_contig9:1389377..1389524Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1389378..1389524 +
1695741059.9240818-CDS-S-ischiensis_contig9:1389377..13895241695741059.9240818-CDS-S-ischiensis_contig9:1389377..1389524Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1389378..1389524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20559.1

>prot_S-ischiensis_contig9.20559.1 ID=prot_S-ischiensis_contig9.20559.1|Name=mRNA_S-ischiensis_contig9.20559.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=219bp
AGDGCPSPPPPLPAAPRRTSAGGSVGARRTERAVPPSLFVKMAWDIYHQV
EEQLSEVALMRAGLWSDEWGREFDVGVQGLQTATQRAAEAVGTDACRSEG
ALLEAKSTRAAIDDVKWQCREQIQTLYSDAAAGGLGGVDASLLQLLSLEG
GEASALGGVVGPSPLDDDRQKTWDDLSRLVASVSRATADVRRTLQLRRED
AGLSTPLRTGPPAPPGEEE
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mRNA from alignment at S-ischiensis_contig9:1382993..1389524+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20559.1 ID=mRNA_S-ischiensis_contig9.20559.1|Name=mRNA_S-ischiensis_contig9.20559.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=6532bp|location=Sequence derived from alignment at S-ischiensis_contig9:1382993..1389524+ (Schizocladia ischiensis KU_0333)
GCCGGGGATGGGTGCCCGTCACCGCCGCCGCCTCTGCCGGCGGCCCCGAG
GCGGACGTCGGCGGGCGGCTCCGTCGGGGCGAGGAGGACAGGTGCGGTTA
CCGCGATTGATGCTTGGAAGTACTGTTTTTATGCAGCGATTGATGCTTGT
TTTGATACTTGGAAGTACTTGTTTTCGTGCAGCCGGCCGAGCGGTTTGGA
CCACCGGTCCCGTTCCGGCCGCCCCCGGGGACCTCTGCGACCAATCGGAT
TGATTGTCCCGTCCCGCCCACGTCAATGATGTGATTTTTTCTGCCCACCA
TGTCAGTGATGTGATTGATTAGGTACTGCCATGTGGTGTGATGTGATATT
AGGTGATGTCTTAGTGTTGTGCTTTGGAGTGCGTACCGCATCACGTCCAC
TATCACACCACGGCACACAACCCTCTCGACCAATCTGTTTGACGGAGGAG
CTGTTGCAGCCAGGACGAATCCGGCCTAAACCACGAATCCCCCTGGGCGG
CCGGCCGGCCACCCCCCGGTCTGTGGGGATGCCACCATGAAAAAAAAAAA
AAAAAACGTGACTTGATGTCACCCATGGGAGTGCAGAGCGGGCAGTGCCG
CCGTCGCTGTTTGTGAAGATGGCCTGGGATATCTACCACCAGGTTGAGGA
GCAGCTATCAGAGGTGGGAGTTGAGGGGTGATTCACAAGTGCTTCGAAGT
GAATCGTAGCGAGGTACAACGCACGTGTGTGAGATTGAGTGTTCTCGTAT
TAGTGGTTTTCCCATTTAAGGATTGAGTGTTCTCGTACTACAGTAGTGAT
TATCACACCAAAGCGATGTCTACCACCAGGTTGAGGAGCAGCTATCAGAG
GTGAGAGTTAGGGGAATTGCTATACTAAGCGTGCAGTACAGGACTGAGTA
TGTACTACATAGTATGTACTCTACTGAGCATGCAGTACAGAGTGTGTGTG
TGTGAGGACAAGCAGGAGACGAGATATACCATGTACCTCGAAGCAAGTAG
CACTGTACTGAGAATGTATGTACTGGGATGTCTACCACCAGGTTGAGGAG
CAGCTATCAGAGGTGAGAGTTGAGGGGTGATTCACATACTTCGAAGTATA
TCGTAACGAGGTACGACCGCACGTGTGTGAGATTGAGTGTTCTCATATTA
GTGGTTATCCCATTTAAGGATTGCATGTTCTTGTATTAGTGATTATCACA
TCAAAGCAATAAAAACAAAGAGGGGCGGGGTGAAGAAAAAAGAGGTGGGA
GACAAGGGAATTGCTGAGCGTGCAGTACAGTACGGCAGTGATGGAATATC
GATCAGTAGATAGTTATCGGGCAGACTGATTTGTGGGTGGCGTTACCAGC
CACTTGGATTTAGCGTGGGTCAAACTATCAAATATCGACTATCGATAGAT
GTATAGGTCAGCACTGTCAATAAATAGGTTGATTTGCGTAGATATTCCAT
CACTGCAGTACGGTAGTACAGCGCTCGAAGGGCGGGCAGTTGGTCGCTAT
TGTCCTGCTCAAGTAAGTAGTACGTACCCATTGGCTTGTCTTGCGACATA
ACCTTGCGTGCATTGCTGACTGCCCTACAGTAGCGGGGCTGTGCATTCTA
CGGGAGCAAATAGCGCACACAACCGTTTATCGCAAACAATGTGGTAGTAG
CGAGCGAGCGGGAAAGACTTTCGATGCTCCTCCACTTCACTCTTAAAATG
ATTTTTTTTTCCGTGGGAGTTACAGTAGTAGCCAAGTGGGAGAGAGTTGC
GAGATGCACATTGTCCCTGCTTGCGTGAGTTCCGGGCCCCAACACGGAAG
CCCCTTCCTACAAGCGTTTACTCTCATCGTGTACTCTAGACTCAACATTT
TGTCGTTTGGCGTCACATCAATTCATACCCCCCCTTGACCGTTCCGCCCG
CCCGCCCCGCCCGGTACCGGTACCGATGTTGGACTGTGCCCCAAAGGTTG
CGCTCATGCGGGCCGGACTATGGAGCGACGAGTGGGGCCGCGAGTTTGAT
GTGGGGGTGCAGGGGCTGCAGACCGCGACCCAAAGGTAAGTACAGTGCAG
AGACCAAGTAGTTAGGAGAATCGAGTTTCAAGGAACCAAGCAGTTAGGAG
ACTTCATTTCAAAGTTTCCCAAGTAGTTAGGAGACTGTAGTTGGACGGGT
GTATATATGCACAGTAGAGTTCCTTTAGTCATGTGATAATCACTAATCTA
CGAACACTCAATCCTTAGATGGGGTGACCGCTAAACGAGAACATTCAATC
TCACGCACGTGCGATTGTGTGTGTGTGCATACACCTCCGTGTATGTTTGT
GTGCGCGCGCACATGCGCGTGTGCGTGTGCGCGTGTTGCCTGCCCTGAAG
GCCCCGCGCAAGTGACGTGACGTGACGTGGTGTGGTGTGAGATGTGGTTT
TGCTGCTTCGTCTCGATCGAGGCGCGTGGTCAATGGTCTCGGGACTACAG
CAAGCACAACGTGAGCACACTATACTCTCTCTACATATACCTACTCGACC
CACGTATCGAATTGTTGCGCGATTTTTCTTTTCAATGCAGGGCGGCCGAG
GCCGTCGGCACGGACAACGTGGGTACATATACATATACTTCCAGAAGTAT
TTTGAGTGGTAGATAAGCGGCGAGTTCCAGGCCCCGTGCCAAAAGGCGCG
TCCCGAAACGGGACTCAACGAAGCCCTTCTTCCCCTCGCATGGCATATGT
ATACCTGCTTGATCCATGTGTCGAATTTGTCGCGCGATTTTTTCTTCTCA
ACGCAGGGCGGCGGAGGCCGTCGGCACGGACGCGTGTCGGTCGGAGGGCG
CCCTCCTGGAGGCCAAGAGCACAAGGGCCGCCATAGACGATGTCAAGTGG
CAGGTGCGTTGATTCCATATTTATTGTGCTTTGAAGTAACGACATACAAT
CGCACTTGTGTGAGATTGAGTGTTCTCGTACTTCCAAGTAACTGTAGTAC
TTAGGCCAAGAGCACTAAGGCCGCCATGGACGATGTCAAGTGGCAAGTGA
TTCGTATAGATAACGAGGTACAATCGCATGTGTGTGAGTGTTCTCGTACT
TCCAAGTACTTCGAAGTACTACTGTAGTGGTTATCCCCCCAAAAAAGAAC
AAAGGCCGCCATGGACGACGTCACGTGGCAGGTGACTCACATAAATTGTA
CGAAGTACTCACGAGGTACAATCGCACGTGTGTGAGATTGAGTGTTCTCG
TACTTCCAAGTACTTCCAAGTACTACTGTAGTGGTTATCCCCCCCCAAAA
AGAAGGCCAAGAGCACAAAGGCCGCCATGGATGACGTCAAGTGGCAAGTG
ACTCACATAAATTGTACGAGGTACTCACGAGGTACAATCGCACGTGTGTG
AGATTGAGTGTTCTCGTACTTCCAAGTACTTCCAAGTACTTCCAAGTACT
ACTGTACAGTAGTGGTTTTCCCCCCCAAAAAGAAGGCCAAGAGCACAAAG
GCCGCCATGGACGACGTCAAGTGGCAGGTGCGTTGATTCATATATATTGT
AACGAGGTCCATGTTTGTTGCTTCTTTGCCTGATGTTTGTGGCTTCTTTG
CTTGATTTTTTTGCCCTGCGGGTGAAAAGAAGGGCTTCTGGTGAGGTCCC
CACCTTAGGTTGTTGGGACGGGGCCCGGAACTCGTGTGTCTTTAATAATA
AAACGAAAACAAAAAATCGTAGCGAGACACACACAATCGCGTGCGTGTGA
GATTGAGTGTTCTCGTATTAGTGCTGATCCCATAAAAGGTTTGGCGGGGC
GCGCTACCGATCTGTCGGCGTGGTCTGTTACCGTAGTCGGCGGAGAGATA
TTGCCCCCACGGGACAATTTTCGGGGGAATATTTCTAACCGGGAGGGTCC
TGAACTGTCCCAAAACTCTCTGAAGAGTTCCCCCAGGTCCTGAGGGAGAT
TTTCCGAGTTTTCCCGCGCGAATCCGACCAATATTCGGCGAGAAAGGTTC
TCTCGAGAATTGGCATGGGGGGGCAATATCTCTCTGCCGATTACGGTAGT
TTGTGTCATGCGTTGCGCATTGCCGAACGTGCGACGTGATGTGATTTGTG
ATGTGAGGCTGCCCGCACATACTCTACTTCTGGAAGCACGGTTGGCACGG
GGAGATGTGACCTGACGCGTTGTGATGTGATGTGATGTGGTGTGATGCGA
TGTGATGTGGTATGATGCGATGTGATGTGGTGTGATGCGATGTGATGTGA
TGTGATGCGATGTAGTGTGGTGTGACGTGATGCGATGTGATGTGTCGGCG
TTGAGATGCCGGCCTGCCCTGCTTCGTGCATGCCCGCGCGCAGAGTTGGC
CCGAGCACGGGGGGCGATGTGATAGTGTGATGCAATGTGGTGTTATGTGA
TGTGATGCGTTGTGATGGTCCGCACCTCACCCCGTGTTGTTCCTGAAAAT
ACTACTCGTACTACAGTAGTACGAGTACGTACCGTGCTTTACAGTGCACG
TCACATCACACCACATCATTATCAGCAAGCCATGTGATGCGGCGTCAAAA
CTAGAGAAAACTAGAGCGCACATGACGTCACATCACATCACATCATATCA
AATCGCATCACGTCACATCACGTGTAGCAGGGTCCATGGGCACCCGCGAC
TGTCGCTCTTGGCTTGCAACCGTCTCGTGGCATGAAGCGCCGGCGCCCAG
CAAGACATTCGTCCCGATGAGTCACTTTTTGCTCCTGAAGTACCAGTCGC
TTTGGCGGCCCAAACATGTTCGCTGCTGAAGCACCAGTCACTTTGGCGGC
GCAAACGTGTTCGCTGCTGAAGCACCAGTCACTTTGGTGGCCCAAACGTG
TTCGCTGCTGAAGCACCAGTCACTTTGGCGACCCAAACGTGTTCGCTCAA
TCCCGAAATACTCGAGTACCTACTTGCAAGTACCTCTGGCAATCAACGCA
TGAGTAGCCCCTGAACCCCCCCCCCCGCGCGCCACCCTTGCTCATCAGTG
CTGCGAACAGATCCAGACCCTTTACTCCGATGCCGCCGCAAcccCCCCCC
CCACCGCCGCCACCCTTGCCCATCAGTGCCGCGAACAGATCCAGACCCTC
TACTCCGATGCCGCCGCCGGAGGCTTGGGCGGTGTGGATGCGTCACTGCT
GCAGCTGCTGTCGTTGGAGGGGGGGGAGGCGTCCGCCCTGGGAGGCGTTG
TGGGGCCCTCTCCCCTGGACGACGATCGCCAGGTATGTGCTGTATAGTAC
AGTGTGTACTTTGAAGTATTACAGTATATATATGTACTCGCGTTGTGCTT
GCCGTGGTCCCGAGACGATGATCACCAGTAAGGACTGTACTGTATAGTTA
TAGTACTTCGAAGTACGAAGTAGTGTATTGCATGGCTAAGTATCTACTCG
TGTCGGAGGGCAAAACTGAAGTTTCGACTTAGGTCTGTCGGGCCCTCTCC
CCTGGACGACGATCGCCAGGTATGTGCTGTGTAGGAGTGTACTTAGAAGT
GTTACGGTTTTGTACTGTACAGTAGTGTATTGCGGTATATTGGAGGGGGG
GGGGGCGTCCGCCCTGGGAGGCGTTGTTGGCCCTTCTCCCCTGGACGACG
ATCGACAGGTAAGGACTGTACTGTGTTGTACTTCGAAGTAGTGTAATACA
GTACGAGTACAGCGCAGTCCGCAGGTCCAGCAGTGATTGCATTTTGTGCT
CTGGCCGGCGGTCCAGCAAGTACTCCGAGTAGCCTCTACCGCATCCTCCT
GAACCCGTGGACGACGACGGTACGCTGATTCCTCAGCAAGTAGACCCCCT
TTTGTTGAGCCCACCATCTTTTTCGCTAACCCCTATGCTGCAGTTTAGGC
AGCCGTCGTTTCACCAACCTCTATACATCGTTCAGGAAGCTGCCATTTCA
TTACCCCCTGGGTATAGTTTGTGGTGCCATCACATCACTAACCTCCATAG
TTACATGTACTACCGCCAATCACCCCCTCCTTGGGTTGTTAGCCCTACGA
ACCCCCCTTTGTTTTACTTCTAAGTAATTCTTTGATGTGATCACCACTAC
AGTAGTACGAGAACACTCAATTCTTAAACGGGATAACCACTAATACGAGA
ACACTCAATCTCACACACGTGCGATTGTACCTCGCTGCATTTTTTTTTCG
AGTTATTTTTTTGACATGCGAGTTCCAGGCCCCGTCCCAACAACCCAAGG
TATGGACCTCACCAGAAGCCCTTGTTGGCTCGCAGGGCCGTAACATCAGG
CAAAGAAGCAACAAACACAGGTAATGCAGGGACAATGCATGGGGGCCTCT
CACGTGCCGCGCTGCGGGACGTACCTGCGAGAGCAAGGGCACATTGAAGT
TGCAAATGCCGTGAGAAGACGTCAGCAAGTGGGTCAATTTATATAGTTCG
TACTTCGAAGTAAATCAAGCCCCCACATCGCCCAGAAAACGTGGGACGAC
CTCTCCCGCCTTGTGGCGTCCGTGTCCCGGGCAACCGCCGACGTCCGGCG
AACCCTTCAGCTCCGCCGCGAGGACGCGGGCCTCTCCACGCCGCTGCGGA
CAGGGCCGCCCGCCCCGCCGGGGGAGGAGGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1382993..1389524+

>mRNA_S-ischiensis_contig9.20559.1 ID=mRNA_S-ischiensis_contig9.20559.1|Name=mRNA_S-ischiensis_contig9.20559.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1314bp|location=Sequence derived from alignment at S-ischiensis_contig9:1382993..1389524+ (Schizocladia ischiensis KU_0333)
GCCGGGGATGGGTGCCCGTCACCGCCGCCGCCTCTGCCGGCGGCCCCGAG
GCGGACGTCGGCGGGCGGCTCCGTCGGGGCGAGGAGGACAGGCCGGGGAT
GGGTGCCCGTCACCGCCGCCGCCTCTGCCGGCGGCCCCGAGGCGGACGTC
GGCGGGCGGCTCCGTCGGGGCGAGGAGGACAGAGCGGGCAGTGCCGCCGT
CGCTGTTTGTGAAGATGGCCTGGGATATCTACCACCAGGTTGAGGAGCAG
CTATCAGAGAGCGGGCAGTGCCGCCGTCGCTGTTTGTGAAGATGGCCTGG
GATATCTACCACCAGGTTGAGGAGCAGCTATCAGAGGTTGCGCTCATGCG
GGCCGGACTATGGAGCGACGAGTGGGGCCGCGAGTTTGATGTGGGGGTGC
AGGGGCTGCAGACCGCGACCCAAAGGTTGCGCTCATGCGGGCCGGACTAT
GGAGCGACGAGTGGGGCCGCGAGTTTGATGTGGGGGTGCAGGGGCTGCAG
ACCGCGACCCAAAGGGCGGCGGAGGCCGTCGGCACGGACGCGTGTCGGTC
GGAGGGCGCCCTCCTGGAGGCCAAGAGCACAAGGGCCGCCATAGACGATG
TCAAGTGGCAGGGCGGCGGAGGCCGTCGGCACGGACGCGTGTCGGTCGGA
GGGCGCCCTCCTGGAGGCCAAGAGCACAAGGGCCGCCATAGACGATGTCA
AGTGGCAGTGCCGCGAACAGATCCAGACCCTCTACTCCGATGCCGCCGCC
GGAGGCTTGGGCGGTGTGGATGCGTCACTGCTGCAGCTGCTGTCGTTGGA
GGGGGGGGAGGCGTCCGCCCTGGGAGGCGTTGTGGGGCCCTCTCCCCTGG
ACGACGATCGCCAGTGCCGCGAACAGATCCAGACCCTCTACTCCGATGCC
GCCGCCGGAGGCTTGGGCGGTGTGGATGCGTCACTGCTGCAGCTGCTGTC
GTTGGAGGGGGGGGAGGCGTCCGCCCTGGGAGGCGTTGTGGGGCCCTCTC
CCCTGGACGACGATCGCCAGAAAACGTGGGACGACCTCTCCCGCCTTGTG
GCGTCCGTGTCCCGGGCAACCGCCGACGTCCGGCGAACCCTTCAGCTCCG
CCGCGAGGACGCGGGCCTCTCCACGCCGCTGCGGACAGGGCCGCCCGCCC
CGCCGGGGGAGGAGGAGAAAACGTGGGACGACCTCTCCCGCCTTGTGGCG
TCCGTGTCCCGGGCAACCGCCGACGTCCGGCGAACCCTTCAGCTCCGCCG
CGAGGACGCGGGCCTCTCCACGCCGCTGCGGACAGGGCCGCCCGCCCCGC
CGGGGGAGGAGGAG
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