mRNA_S-ischiensis_contig9.20556.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20556.1
Unique NamemRNA_S-ischiensis_contig9.20556.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1374144..1378824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size793
Cds size789
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20556.1prot_S-ischiensis_contig9.20556.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1374144..1378822 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817365.7209823-CDS-S-ischiensis_contig9:1374143..13741691622817365.7209823-CDS-S-ischiensis_contig9:1374143..1374169Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1374144..1374169 +
1695741059.7594993-CDS-S-ischiensis_contig9:1374143..13741691695741059.7594993-CDS-S-ischiensis_contig9:1374143..1374169Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1374144..1374169 +
1622817365.7351696-CDS-S-ischiensis_contig9:1375147..13753731622817365.7351696-CDS-S-ischiensis_contig9:1375147..1375373Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1375148..1375373 +
1695741059.7692194-CDS-S-ischiensis_contig9:1375147..13753731695741059.7692194-CDS-S-ischiensis_contig9:1375147..1375373Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1375148..1375373 +
1622817365.748376-CDS-S-ischiensis_contig9:1376449..13765671622817365.748376-CDS-S-ischiensis_contig9:1376449..1376567Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1376450..1376567 +
1695741059.7784293-CDS-S-ischiensis_contig9:1376449..13765671695741059.7784293-CDS-S-ischiensis_contig9:1376449..1376567Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1376450..1376567 +
1622817365.7603478-CDS-S-ischiensis_contig9:1378403..13788221622817365.7603478-CDS-S-ischiensis_contig9:1378403..1378822Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1378404..1378822 +
1695741059.788259-CDS-S-ischiensis_contig9:1378403..13788221695741059.788259-CDS-S-ischiensis_contig9:1378403..1378822Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1378404..1378822 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20556.1

>prot_S-ischiensis_contig9.20556.1 ID=prot_S-ischiensis_contig9.20556.1|Name=mRNA_S-ischiensis_contig9.20556.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=263bp
KDGAGPSGGLLLGTAGGGVVSLDSSLQPVATFPFPAGVLYYEDNAERPPS
PAVVDQVSVLPGGQGRVYVGYSWVGFAFGDGHLQVGGMMFSCDGGGGWSP
LTHDRGLCTPSMSRPSSRLHVAVRQEVPAGWPAVLLCSSACAEVGVLEER
PGGHHGWQETELDEGCGMHTPNGPNDEAAFPQGLCVSANASLTSPFGLEE
DGGEAPPSPLVFLLSSAGALTCGVVLEAGYSFAGDLVAPRRPPEKVEGSL
MAGRRPRAWREEA
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mRNA from alignment at S-ischiensis_contig9:1374144..1378824+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20556.1 ID=mRNA_S-ischiensis_contig9.20556.1|Name=mRNA_S-ischiensis_contig9.20556.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4681bp|location=Sequence derived from alignment at S-ischiensis_contig9:1374144..1378824+ (Schizocladia ischiensis KU_0333)
AAGGACGGGGCAGGTCCCTCGGGCGGGTGAGTCTGCTTTCAGTTGTGGGA
TGTGTGCTGCTCCGTCTTGGCCGAGTTAGATGTGGTGTTATATGATACTA
CGTAGTATCTACAGTATATATATATATATATGAACTCACGTTGTGCTTGC
CGTAGTCCCGAGACCACTGACTGATACTCGAGTATATATTTCTATGTGCT
CACGTTGTGTTTGCCGTAGTCCCGAGACTGTTGACCGCTATAGCGCCGTT
GACGCCGGAGCGTTCTCCCTGTGATGTGATGTCAAACTACTGTACTGTAG
AGTGCAAATCGCAACTGAGCACATCGTATCGTATCGCACCGCAGCGCGCA
CTGCTCCGTCTCGGCGCGGCGCCCTGTGGTCAAAATGGTCTCGGGACCGC
GGCAAGCACAACGTGAGTGTGTGTATATATATGTATGTACTCACGTGGTG
CTTGCCGTAGTCCAGAGACCATTGACCCCGCGCCTCGTTCGAGACGGAGC
AGTGTGAGTAGAGTACATATATATATATACCCTAATGGTCTCGGGACTAC
GGCAAGCACAACGTGAGTGGAGTACGTACATATAGTACGCGATAGGTGGC
CTGCAGTAGTATATATATATGTATGTACTCACGTGGCGCTTGCCGTAGTC
CCGAGACCATTGACCCCGCGCCTCGTTCGAGACGGAGCAGGTCCCCTATA
TATATGTATATGTGCTCACGTGTTGCTTGCCATAGTCTCGAGTAGTGGTA
TGCAATGGGTGCGCCGCAGGTCGGCTAAGCCTGGCGGGCAGGCACCAATC
GCCCTCCCCAACCCCCGGTTCTCAAACCCCTCCTCCATAATCACTAATAC
TATGTATAATAACATTCGATCCTTAAATGAATCAACTGCTATTACGACAA
CAGTCAATCGCACACACGTGCGATTGTACCTCGTTGCAATTTATATGAAT
CACACCCCTCCTCCTCCTCACGGGCTGCTGCTCCGTCCGCGACCGCGATA
CAAGCCTGCTGCTGGGCACGGCGGGGGGGGGCGTGGTCTCTCTGGACTCT
TCCCTGCAGCCCGTGGCCACATTCCCCTTCCCGGCCGGCGTGCTGTACTA
CGAGGACAATGCGGAGCGGCCCCCTTCCCCCGCCGTGGTGGACCAGGTCT
CGGTGCTGCCGGGGGGGCAGGGCCGGGTCTACGTGGGCTACTCGTGGGTG
GGGTTTGCGTTCGGCGACGGACATCTGCAGGTATTTACTTAGCCCTTTTG
CCCCTGGGGTCCGTATAATATAGCGTTTTCTTCTTTTTTTTCGCCAGTCT
GTCACCGTTTTTTTTCCCCGCTCCCTTTTCGCCCGCTTTTTTTGCGCGAC
TAGAGCGCTTCCAAGAGGGCAGTGCTTCGAGTGCTGTGTGCTTGTACACG
TTGTGCTTGTGAAATGCGCCCTTTTTTTCCGCTCCCTTTTCGCTCGCGTT
TCGCACGACTGAAGCGCTTCCGAGAGTGCCTCGAGTAGTACTGTGTGCTT
GTACTCGTGCATGTTGTGCTTGTGAAATGCAGGGGTCTACACCCGGCCCC
GGAAAAGCCACAGGCTGGGCCATGGCCCGTGCACTGAGTCGGCGTAGACA
GGTTCGGTGGCGGTTAAAAATCACTGACACACCGTGTGGAAGGTTCTTGG
GTCTGTTTGGCAGGACCAGCTCGTACCCGCCCACCCTTCCCTCTCCTAGC
CTTGAACCACCATCACCTGCCCCTAAAACACCACCACCACATTCACCATC
ACCATAAGCTTATCCCCGTCACCGCCACCCCCACCCCCAGACACCGCCAA
GGCTGTCATAGCATTGCCAATACTAGCACCACCACCACCACACCTCACCG
CACCACCACCACTACTACCACCACCACCACCACCTGGCACCATCACCGTT
ACCACCACCCCCACCCCCCCGACGACCACCAACACGATCACCGCCACCGC
TGCCATCTCCCCCGCCACGCCACCATCACGACCACCGCCACCACCACCGC
CACCACCACCATCACCACCATCACCGCCACCACCGCCACCACCACCACCA
CCGCCGCCACCACCACCACCACCGCCGCCACCACCACCACCACCACCACC
GCCGCCACGACTACCACCACCACCACCGCCACCACCACCACCACCACCAC
CACTACCACCACCACCAACGCCACCACCACCACCACCACCACCACCGCCA
CCACCACCACCACCACCACCACCACCACCACCACCGCCCCCGCCACTTTT
CCCGCCCACGCATCCTGCTGGCCCCCGCCGCGGGCCGCTGCCTGGCTGGG
CGACAGGTCGGAGGCATGATGTTCTCCTGCGACGGCGGGGGGGGCTGGTC
CCCCTTGACCCACGACCGCGGACTGTGCACCCCCAGCATGAGCCGGCCAA
GCTCCCGCTTGCACGTCGCGGTGAGTTTTGGGGGCGCTAGTGTACTGTAC
CGTGCTTAGCCCCTGGAGGACGAAGGGACACTGATTTGATGCGGTGTGAC
GTGATGTGATGTGCACTCTCGTGTACTGTGGTATGGCATCACTTCACAGA
TGTCACATCACATTGCTTCCGGAAGTACATCGTGATGCGATTTGATGTGT
ACTCTTGTGTACAACTACTGTAGCGTGGCATCACTTCACAGATGTCACAC
CACGTTACATCGTGGTGTGATGTGATGTGTACTCTACTGTACTGTAGTGT
GGCTTCACTTCACAGACATCACATCACAGTACATGGCGATGTGATGTGAT
GCGTGCTCTAGTGTGCTGTAGTAGGTATCGCATCACTTCACAGTGTCACA
TCACGTTACATGTGACGTGATGTGATGTGTGCTCTAGTGTACTGTGGTAT
TGCATCACTTCACAGATGTCACATCACATGCCTTCCGGAAGCGCATGGTG
ATGTGATGTGATGTGTACTCTGTAGTGTACTGTAGTATGGCATCACTTCA
CAGATGTCACATCACGTTACACCGTGATGTGATGTGATGTGTGTAGTATG
GCATCACTTCACAGATGTCACATCACGTTACACCGTGATGTGATGTGATG
TGTGCTCTAGTGTACTGTAGTATGGCATCGCTTCCCAGATGTCACATCAC
AATACTTACATCGTGATGTGATGTGTGCTCTAGTGTACTGTAGTGTGGCA
TCACTTCACAGATGTCACGTCACGCTACATGGTGGTGTGATGTGATGTGT
ACCCCCGTGTACTGTAGTATGGCATGACTTCACAGATATCACATCACATG
CCTTCCGGAAGTACATGGTGATGTGATGTGATGTGATGTGTGCTCTAGTG
TACTGTAGTATGGCATCACTTCACAGATGTCACGTCACGTTGCATGGTGG
TTTGATATGATGTGTGCTCTACTTAGTGTACTGTAGTAGGATATGGCATG
ACTTCACAGATGTCACATCACAATGCTTCCGGAAGTACATGGTGCTGTGG
TGTGACGTGGACTCTATGTAGTGTACTGTAGTATGGCATCACTTCACAGA
TGCCACATCACATTGCATCGTGATGCGATGTGACGTGGAAGTACTCTACA
GCACATCGTGTACTGTACTTCGTACTTCGTAGTAGGTATGCCATCACTTC
ACAGATGTCACATCACGCCACAGTACATCGTGTCCCGATGCGTGCTCGAA
CGCAGAAGTACTTCCATGTGCCGTAGTTTGACATCACTTCGCCTAGTGTC
CCGTCGTCCTCAAACGGCTACCATGTACTTGAGTAGTACTAGTACGAGTA
GTAGTAGTACTGTAGTAAGTTACAACACAGGGAGCGACGGCACACTTAAG
GCTGGGGTACGCTGAACTGGAGGAGTTTGGGGCGGGACCTGTGTGCCGCA
GTCCCCTCTTCTAGGGGTTGAGGGGACCTCTGTTAGGTTTGATGACCTCT
GTGAGCCGTAGGGCACGCTGAACTGGAGGAGTTTAGGGCGGGACCTGTGT
GCCGCGGTGCCCTACTCCTGGGGTTTGGGGGACCTCTGTTAGGTATGATG
ACCTCTGTTAGCCGCGGTACTCGTACACCGCGCCGGCGGATCTGTGCACC
ATCAAATTCACCCCTCTTCCCCCCCCCCCCAACAAAACCAACCAAACAAC
ACACAAAAAACTAGTTCCTTGATGTGATAATCACTAATATAAGAAGATTG
AATTGTAAAATGGGACAACCACTAGTAGAATCTCACACACGTGCCATTGT
ACCTTGCTACAATTTATATCAATCACCGACACAAAAAACAATTGCCACGC
CGCCGCCGAGGACAGGAGGTACCGGCAGGCTGGCCAGCCGTCCTCCTCTG
CTCCAGCGCCTGCGCCGAGGTGGGGGTCCTGGAGGAGCGCCCGGGGGGGC
ACCACGGGTGGCAGGAGACGGAGCTCGACGAGGGCTGCGGCATGCACACA
CCCAACGGGCCGAACGACGAGGCCGCCTTCCCTCAGGGGCTCTGCGTCTC
GGCGAACGCCTCCCTCACCAGCCCCTTTGGCCTCGAGGAGGACGGCGGTG
AGGCCCCCCCGTCCCCCCTCGTCTTCCTGCTCAGCTCCGCCGGGGCCCTC
ACGTGCGGGGTGGTGCTCGAGGCGGGGTACTCGTTCGCCGGGGACCTCGT
GGCCCCCCGGCGGCCGCCGGAGAAGGTTGAGGGGTCTCTGATGGCGGGGA
GGCGTCCCCGGGCGTGGCGGGAGGAGGCGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1374144..1378824+

>mRNA_S-ischiensis_contig9.20556.1 ID=mRNA_S-ischiensis_contig9.20556.1|Name=mRNA_S-ischiensis_contig9.20556.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1578bp|location=Sequence derived from alignment at S-ischiensis_contig9:1374144..1378824+ (Schizocladia ischiensis KU_0333)
AAGGACGGGGCAGGTCCCTCGGGCGGAAGGACGGGGCAGGTCCCTCGGGC
GGCCTGCTGCTGGGCACGGCGGGGGGGGGCGTGGTCTCTCTGGACTCTTC
CCTGCAGCCCGTGGCCACATTCCCCTTCCCGGCCGGCGTGCTGTACTACG
AGGACAATGCGGAGCGGCCCCCTTCCCCCGCCGTGGTGGACCAGGTCTCG
GTGCTGCCGGGGGGGCAGGGCCGGGTCTACGTGGGCTACTCGTGGGTGGG
GTTTGCGTTCGGCGACGGACATCTGCAGCCTGCTGCTGGGCACGGCGGGG
GGGGGCGTGGTCTCTCTGGACTCTTCCCTGCAGCCCGTGGCCACATTCCC
CTTCCCGGCCGGCGTGCTGTACTACGAGGACAATGCGGAGCGGCCCCCTT
CCCCCGCCGTGGTGGACCAGGTCTCGGTGCTGCCGGGGGGGCAGGGCCGG
GTCTACGTGGGCTACTCGTGGGTGGGGTTTGCGTTCGGCGACGGACATCT
GCAGGTCGGAGGCATGATGTTCTCCTGCGACGGCGGGGGGGGCTGGTCCC
CCTTGACCCACGACCGCGGACTGTGCACCCCCAGCATGAGCCGGCCAAGC
TCCCGCTTGCACGTCGCGGTGAGTCGGAGGCATGATGTTCTCCTGCGACG
GCGGGGGGGGCTGGTCCCCCTTGACCCACGACCGCGGACTGTGCACCCCC
AGCATGAGCCGGCCAAGCTCCCGCTTGCACGTCGCGGTGAGACAGGAGGT
ACCGGCAGGCTGGCCAGCCGTCCTCCTCTGCTCCAGCGCCTGCGCCGAGG
TGGGGGTCCTGGAGGAGCGCCCGGGGGGGCACCACGGGTGGCAGGAGACG
GAGCTCGACGAGGGCTGCGGCATGCACACACCCAACGGGCCGAACGACGA
GGCCGCCTTCCCTCAGGGGCTCTGCGTCTCGGCGAACGCCTCCCTCACCA
GCCCCTTTGGCCTCGAGGAGGACGGCGGTGAGGCCCCCCCGTCCCCCCTC
GTCTTCCTGCTCAGCTCCGCCGGGGCCCTCACGTGCGGGGTGGTGCTCGA
GGCGGGGTACTCGTTCGCCGGGGACCTCGTGGCCCCCCGGCGGCCGCCGG
AGAAGGTTGAGGGGTCTCTGATGGCGGGGAGGCGTCCCCGGGCGTGGCGG
GAGGAGGCGGACAGGAGGTACCGGCAGGCTGGCCAGCCGTCCTCCTCTGC
TCCAGCGCCTGCGCCGAGGTGGGGGTCCTGGAGGAGCGCCCGGGGGGGCA
CCACGGGTGGCAGGAGACGGAGCTCGACGAGGGCTGCGGCATGCACACAC
CCAACGGGCCGAACGACGAGGCCGCCTTCCCTCAGGGGCTCTGCGTCTCG
GCGAACGCCTCCCTCACCAGCCCCTTTGGCCTCGAGGAGGACGGCGGTGA
GGCCCCCCCGTCCCCCCTCGTCTTCCTGCTCAGCTCCGCCGGGGCCCTCA
CGTGCGGGGTGGTGCTCGAGGCGGGGTACTCGTTCGCCGGGGACCTCGTG
GCCCCCCGGCGGCCGCCGGAGAAGGTTGAGGGGTCTCTGATGGCGGGGAG
GCGTCCCCGGGCGTGGCGGGAGGAGGCG
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