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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 602 |
| Cds size | 357 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817365.6682262-UTR-S-ischiensis_contig9:1369191..1369436 | 1622817365.6682262-UTR-S-ischiensis_contig9:1369191..1369436 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 1369192..1369436 + |
| 1695741059.7146013-UTR-S-ischiensis_contig9:1369191..1369436 | 1695741059.7146013-UTR-S-ischiensis_contig9:1369191..1369436 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 1369192..1369436 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817365.6795297-CDS-S-ischiensis_contig9:1369436..1369614 | 1622817365.6795297-CDS-S-ischiensis_contig9:1369436..1369614 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 1369437..1369614 + |
| 1695741059.7295997-CDS-S-ischiensis_contig9:1369436..1369614 | 1695741059.7295997-CDS-S-ischiensis_contig9:1369436..1369614 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 1369437..1369614 + |
| 1622817365.6899512-CDS-S-ischiensis_contig9:1371081..1371260 | 1622817365.6899512-CDS-S-ischiensis_contig9:1371081..1371260 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 1371082..1371260 + |
| 1695741059.747453-CDS-S-ischiensis_contig9:1371081..1371260 | 1695741059.747453-CDS-S-ischiensis_contig9:1371081..1371260 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 1371082..1371260 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20555.1 >prot_S-ischiensis_contig9.20555.1 ID=prot_S-ischiensis_contig9.20555.1|Name=mRNA_S-ischiensis_contig9.20555.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=119bp
MEGAVQELHMGFREELKLRSLAIFEVDGGVAVSGDDQDSPRAVLACTDQF
GVLIVGCNEDIIVADVAEVEAAAVASARIPWKERKKRLGGRHNPLPARAR
ASLGRGTPLGALALSGEGA back to topmRNA from alignment at S-ischiensis_contig9:1369192..1371260+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig9.20555.1 ID=mRNA_S-ischiensis_contig9.20555.1|Name=mRNA_S-ischiensis_contig9.20555.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2069bp|location=Sequence derived from alignment at S-ischiensis_contig9:1369192..1371260+ (Schizocladia ischiensis KU_0333)
CCTCAATTGTTTTGAGCAGCCCATGCTCGCGGGTAACGCACCTGGCCATT
CACGGGAACCGGTCAGGCCACGCAGGGGTGGGGACGACCCTCAGCACGTC
CAGGAGCCCCCCGCCCCTCTGCTCCGGGAACTAGATACGTCTGAAGCTCC
AAGAGTTTGCAGGGGCATCCCCTCCCTCCAGGGGCGGCTGCTGTAGAGGT
GCAAGCTGCCCCACTCTTTGACGGGTTGGCCAATAACCAGAAAAGATGGA
GGGCGCCGTCCAAGAGCTTCACATGGGGTTTCGCGAGGAGTTGAAGCTCC
GGAGCCTCGCCATCTTCGAGGTTGACGGTGGAGTGGCGGTGAGCGGCGAC
GACCAGGACAGCCCCAGGGCGGTCCTCGCGTGTACGGACCAGTTCGGGGT
GCTCATCGTGGGGTGCAATGAGGGTGAGTCTGGCCGCTTTCCATGGGGTT
CCGGTCGCTCCACATGAATGGTGGCGTTCTTTCCCCCCCGTAGTTGACGG
GAAGAGTGGATGGATGTTTTCTTTTGTTTGCTGTTTTTTTCGCGCGACCA
CATGCAACAAGGATTCGGTAGCTGTGCATGCATGAGGGTGCCATGCAATC
CTGAGTTTCCAGTCCTATCGATTTTGTTGATCGTGGGATGGTTTTGATTG
CTTTCCGTTGGTTTCGACCTGCTGCAATGGATCGATTTGTAGCTCGTGTC
CGCTTCGGGATCCCCGGCCGGAGAAACAAGAATTCGGTAGCTGCGTGTAT
GATGGTGCCATGTAATCCTGCATTTCCAGTGCCGTCGATTTTCTTGATCG
TGGGATGGTTTCGATTGATTTCGATTGGTTTCGACCTGCTGCAACGGATC
GATTCGTAGCTCGTGTCCGCTTTGGGATCCTTGCCTTAACCGGGGAACTG
TTTCTAGTAACTTACCTCGAAGTACTAACTTTCTTTCTTTCATGGCCGCG
CCGGGGTTAGCATGCACAGCATTGCGGCCGAGTATACTCATGAACCGGGA
GTGACACATTTTGTATGACACGCTTCGAAGTATGTACTAGTGTGTAGTCG
GGCACGTTGTGCTTGCTGTGATGCAGTCCCGGGACCGTTGTCCAAGACAT
CCAAGCAAGTGATGGAATATCTAGGCAAATTAACCTACTGTATCTATCGA
CAGTACTGATCTATATATCTATCGATGGTCGATATTCAATAGTTTAACCG
ACACTAAATCCAAGTACTTCGTAGCTAGTAACGCCACCCACAAGATCAGT
CGGGCCCGATAGCTACCTACTGATTGATATTCCATCACTGCTCCGTCTCG
ACAGAGGCACGTTGTCAATGGTCTCGGGACTACGGCAAGCACCACGTGAG
CATATATATATGTACTCACGTGGTGCTTGCCGTAGTCTCGAGACCACTGA
TCCCGCGCCTCGTGCGAGGCGGAGCAGGTGAGTATATATATATACATATA
TACACTCGAGTGTTTATATATAAATGTATCAAAGAGCTCTGCTTGTCCAA
ACACCGCGTGGACCGATGCCGGGGAAACGTCCGAGAAAACAATCCGCATC
TTCGAAATGATACTCTTTGAACCTTGATGAAGGTACCACTCGTGCATTCT
GTATATTTGCACAGGTGCTGTAGATGCCAGTGAAGCACATGCCGAAAGGC
TGCGATGGTCACCAATCACGCACATCACACACACACGCGCACGCGAACAC
ACACACACACACACTCGGGAGCGCCTGAACACAACAAGACAAAGCCAAAT
CGAAAGAAACAGTTCACCACCTACCGCGCACCTACTACTAGCAATACGAG
AACACTCAATCTCACACACGTGCGATTGTACCTCGTTACAGTTTGTATGA
ATCACCACCTACCTACCCCGCGCCCCCCCAACATCCACAGACATCATCGT
GGCCGACGTGGCCGAGGTAGAGGCGGCGGCGGTGGCTTCAGCAAGAATTC
CCTGGAAGGAGAGGAAAAAACGCCTGGGCGGGCGCCATAACCCGCTTCCG
GCCCGGGCCCGGGCATCGCTGGGCCGGGGAACCCCGCTCGGGGCGCTCGC
CTTGTCCGGGGAAGGGGCG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig9:1369192..1371260+ >mRNA_S-ischiensis_contig9.20555.1 ID=mRNA_S-ischiensis_contig9.20555.1|Name=mRNA_S-ischiensis_contig9.20555.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=714bp|location=Sequence derived from alignment at S-ischiensis_contig9:1369192..1371260+ (Schizocladia ischiensis KU_0333)
ATGGAGGGCGCCGTCCAAGAGCTTCACATGGGGTTTCGCGAGGAGTTGAA
GCTCCGGAGCCTCGCCATCTTCGAGGTTGACGGTGGAGTGGCGGTGAGCG
GCGACGACCAGGACAGCCCCAGGGCGGTCCTCGCGTGTACGGACCAGTTC
GGGGTGCTCATCGTGGGGTGCAATGAGGATGGAGGGCGCCGTCCAAGAGC
TTCACATGGGGTTTCGCGAGGAGTTGAAGCTCCGGAGCCTCGCCATCTTC
GAGGTTGACGGTGGAGTGGCGGTGAGCGGCGACGACCAGGACAGCCCCAG
GGCGGTCCTCGCGTGTACGGACCAGTTCGGGGTGCTCATCGTGGGGTGCA
ATGAGGACATCATCGTGGCCGACGTGGCCGAGGTAGAGGCGGCGGCGGTG
GCTTCAGCAAGAATTCCCTGGAAGGAGAGGAAAAAACGCCTGGGCGGGCG
CCATAACCCGCTTCCGGCCCGGGCCCGGGCATCGCTGGGCCGGGGAACCC
CGCTCGGGGCGCTCGCCTTGTCCGGGGAAGGGGCGACATCATCGTGGCCG
ACGTGGCCGAGGTAGAGGCGGCGGCGGTGGCTTCAGCAAGAATTCCCTGG
AAGGAGAGGAAAAAACGCCTGGGCGGGCGCCATAACCCGCTTCCGGCCCG
GGCCCGGGCATCGCTGGGCCGGGGAACCCCGCTCGGGGCGCTCGCCTTGT
CCGGGGAAGGGGCG back to top
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