mRNA_S-ischiensis_contig9.20548.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20548.1
Unique NamemRNA_S-ischiensis_contig9.20548.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1275535..1276427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size236
Cds size234
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817365.615936-CDS-S-ischiensis_contig9:1275534..12756691622817365.615936-CDS-S-ischiensis_contig9:1275534..1275669Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1275535..1275669 +
1695741059.6831768-CDS-S-ischiensis_contig9:1275534..12756691695741059.6831768-CDS-S-ischiensis_contig9:1275534..1275669Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1275535..1275669 +
1622817365.6310909-CDS-S-ischiensis_contig9:1276328..12764271622817365.6310909-CDS-S-ischiensis_contig9:1276328..1276427Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1276329..1276427 +
1695741059.698759-CDS-S-ischiensis_contig9:1276328..12764271695741059.698759-CDS-S-ischiensis_contig9:1276328..1276427Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1276329..1276427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20548.1prot_S-ischiensis_contig9.20548.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1275535..1276427 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20548.1

>prot_S-ischiensis_contig9.20548.1 ID=prot_S-ischiensis_contig9.20548.1|Name=mRNA_S-ischiensis_contig9.20548.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=78bp
METVVPAWGGGGMSSCSMPPAVGGLVLDDDAICSPGDPLIPILTQASSRS
EGLSRSPGVRLARSHSAPWADTQEQPSP
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mRNA from alignment at S-ischiensis_contig9:1275535..1276427+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20548.1 ID=mRNA_S-ischiensis_contig9.20548.1|Name=mRNA_S-ischiensis_contig9.20548.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=893bp|location=Sequence derived from alignment at S-ischiensis_contig9:1275535..1276427+ (Schizocladia ischiensis KU_0333)
ATGGAGACGGTGGTGCCGGCTTGGGGCGGCGGCGGTATGTCGTCCTGCTC
CATGCCGCCGGCGGTAGGGGGCCTGGTGTTGGATGACGACGCGATCTGTT
CCCCTGGGGATCCCCTCATTCCCATCCTCACGCAGGTGCATCAATGATGT
GTGTTTATATTTCCGTGTGTTGACGTGTGTGTGGCGGGTCGCCGCCCCCC
CTCCTCATGGGATGACACATCTTTCCATGCTGTACTACTGCTAGCTGTAA
GTACCTAGTAGGTACGAGCACATGTCGTGTTCACACTCCCTACAATACCC
TTCCCCCACTACGCCCCCGCGTCTCTACCTCCTTCCCCTTTGTGTTTCTT
CTTCTATTTGCCCTGCGCGCGAAGGGAGGACCTAGAGTAAATGGGATGTC
GCGGCCCAGAATTTGCTTACATACGAGTATTTTCTCTCTTTTCGTACTAC
TGTATGGCATACGAGTTCCGCCCCCCCCCCAAAAAACCCTAAGATGTGGA
CCTCACCAGAAGCCCTTCTTCTCTCATCCCACTCGCTTGCTTTGCCTTCC
TCAAATGTATGCACTTGGAAGTACGCTACGGTACTCGAGTACAGTACTTC
GAAGTACTATAGATGTCCCTCAGTCGTATGTACTCGTAGTACGAGTAATA
TTCGAAGCGATACATTCTCCAAGTGACCGCACTGAGCAATAGAGCGCTGT
TCGAAGACCATGAGACCCATATCCATGTTGCCCACCCCGACCCACCCTCC
GCCCACCCACCCCCTACACACACACGCGCGGGCGCGCCCGACAGGCGTCC
AGCAGGTCTGAGGGGCTGAGCCGGTCGCCGGGTGTGCGGCTCGCCCGTTC
GCACAGCGCCCCGTGGGCGGACACTCAGGAGCAGCCATCCCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1275535..1276427+

>mRNA_S-ischiensis_contig9.20548.1 ID=mRNA_S-ischiensis_contig9.20548.1|Name=mRNA_S-ischiensis_contig9.20548.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=468bp|location=Sequence derived from alignment at S-ischiensis_contig9:1275535..1276427+ (Schizocladia ischiensis KU_0333)
ATGGAGACGGTGGTGCCGGCTTGGGGCGGCGGCGGTATGTCGTCCTGCTC
CATGCCGCCGGCGGTAGGGGGCCTGGTGTTGGATGACGACGCGATCTGTT
CCCCTGGGGATCCCCTCATTCCCATCCTCACGCAGATGGAGACGGTGGTG
CCGGCTTGGGGCGGCGGCGGTATGTCGTCCTGCTCCATGCCGCCGGCGGT
AGGGGGCCTGGTGTTGGATGACGACGCGATCTGTTCCCCTGGGGATCCCC
TCATTCCCATCCTCACGCAGGCGTCCAGCAGGTCTGAGGGGCTGAGCCGG
TCGCCGGGTGTGCGGCTCGCCCGTTCGCACAGCGCCCCGTGGGCGGACAC
TCAGGAGCAGCCATCCCCCGCGTCCAGCAGGTCTGAGGGGCTGAGCCGGT
CGCCGGGTGTGCGGCTCGCCCGTTCGCACAGCGCCCCGTGGGCGGACACT
CAGGAGCAGCCATCCCCC
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