mRNA_S-ischiensis_contig9.20546.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20546.1
Unique NamemRNA_S-ischiensis_contig9.20546.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1269156..1271347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817365.523265-CDS-S-ischiensis_contig9:1269155..12693441622817365.523265-CDS-S-ischiensis_contig9:1269155..1269344Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1269156..1269344 +
1695741059.6308403-CDS-S-ischiensis_contig9:1269155..12693441695741059.6308403-CDS-S-ischiensis_contig9:1269155..1269344Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1269156..1269344 +
1622817365.5379248-CDS-S-ischiensis_contig9:1271245..12713471622817365.5379248-CDS-S-ischiensis_contig9:1271245..1271347Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1271246..1271347 +
1695741059.6446362-CDS-S-ischiensis_contig9:1271245..12713471695741059.6446362-CDS-S-ischiensis_contig9:1271245..1271347Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1271246..1271347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20546.1prot_S-ischiensis_contig9.20546.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1269156..1271347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20546.1

>prot_S-ischiensis_contig9.20546.1 ID=prot_S-ischiensis_contig9.20546.1|Name=mRNA_S-ischiensis_contig9.20546.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=97bp
AREPELGGGAPPPQEERRQQRLDGVLLLLHLRFGPEERGPELVRQRVLCP
HQHVFPAHLSPPQLCRGGLFAERGGKLPQEQHQRRGRQAVFLLRAGA
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mRNA from alignment at S-ischiensis_contig9:1269156..1271347+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20546.1 ID=mRNA_S-ischiensis_contig9.20546.1|Name=mRNA_S-ischiensis_contig9.20546.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2192bp|location=Sequence derived from alignment at S-ischiensis_contig9:1269156..1271347+ (Schizocladia ischiensis KU_0333)
GCGAGGGAGCCTGAGCTCGGGGGGGGGGCACCACCACCACAGGAGGAGCG
GCGGCAGCAGCGCCTCGACGGGGTCCTCCTCCTCCTCCACCTCCGCTTTG
GCCCCGAAGAGCGCGGGCCCGAGCTTGTCCGGCAGCGTGTCCTCTGCCCG
CACCAGCACGTCTTCCCGGCCCACCTCAGCCCGCCTCAGGTGATCTTATT
GTACTTGTACAGTACGGTTTCTCGTGGCGCACTTTGATGTAACCATGGTG
CAAATGTGAGATTTTCTTTGCCCGAATAGTTTTATCGAAGAGCGCGGGCC
CGAGCTTGTCCGGCAGCGTGTCCTCCGCCCGCACCAGCACGTCGTCTCGG
CCCACCTCCGCCCGCCTCAGGTGATCTTGTTGTACTTCGAAGTACACAGT
ACTCATTTTTTTTTGCATGAAGATAGAAAGCGAGTGGGAAAGAGGAGGTG
TTCCTACTACAATATACTTCGAAGTACTACGTAGTATATGCGTCAGGCAG
CGTGTCCTCCGTCTGCACCAGCACGTCTTCCCGGCCCACCCCAGCCCGCC
TAGGGCGATCTTATTTGAGTGGTAGATAAGCGGCGAGTTCCAGGCCCCGC
GCCAAAAGGCTCGTCCCAAAACAGCACTCAAGGAAGCCCTTCCTTCCCTC
GCAGGGCAAGAAGAAAACAGGTGATCTTATTGTACGGTATGGTTGCTAGT
GGCGCTCTTTGATGCCACTTGTTTTTTGTAGGAAGACAAACAAGCGAGTG
GGAAAGAGGAGGTGTCCCACTTACGCGAGTTCAGGGCCCCATCCCCGGAA
GCCCGTCTTTCTTGTGGCGCACTTTGATGTCAGGTGTTTTTTGCCAGAAG
ATAAACGAGCAAGTGGGAAAGAAGAGGTGTCCCTACTTACTTACGAGAGT
TCAGGGCCTCACCCCCGGAAGCCCCTTCCTTTCAGGCGTCGCGTCGTACT
GAATCGACAGTTGCAGTATTGATAGAACAACGCGGGGCGAGGTTCGGACC
GTGCGACTACCGTAATGGCGGAGAGACCCCCCCGGGACAATTTTCGGGAG
AGTGTTTCTTGCCGCACAGGTCCCTAGTTAACCCGAAATCTCTCGGACAA
ATACCTCAAGGTCCTGAGGGTATTTTTCCGAGTTTTCCCGCGAGAATCCG
ACCAGTATTCGGCGAGAAAAATTCTCCCGAAGACTGGCATGGGGGGGCAA
GATCTCTCCGACGATTACGGTACAAGTAGGGGCGGCCGCAGCTGTGGCCC
TGCCTTTGCTCGCCAGGGAATGAGCCTGTGAGGGAAGAGGGGGAGGAGGA
GGAGGAGCAGCAGGAGGAGGAGGAGGAGGAGGAAGCAGGCAAGGAGGACT
GGAAGTAGCCCCGTGCTGAAGTAAAGTAGTCCATCAACTGCTTGCGGTCG
GGTGCAGCCCCTTTTGAAGTAGGTAGGTGCTACTGTACAGTACAGCACAG
TGTACTTGCTCGTACGCACGTCACCAGAGAACACCCACCCGCGCTTTTTC
CAATCCATGTCGGCTCGGCACTTTGTCGAAACTCTTTGACCATTAACTCT
TTGAGTGTGTACACGCCGTACTGTATCCTTATACTGTTGTTCCGTGTACA
CCTGGGGCAGAAGGGTTAGGGATCTACTATGTTGTACTACAGTAGTACTT
CGAAGTACTACTGCAGTCGGGGTCACCAGTAAGTTCCGAAAACCCTTCAA
CTTCAATGTGCTGACCTTCAACTTGAGATTTGTGCTGAAGGCTGAGGTAC
AAGGTTTTGACGTGATACCTTCAGATGAAGCGGCCAAATTGTTCGGTGAG
TTGAACGAAACGTTAGGAAAGAGAATACTCCATTGTTTATCTTGAAGGCC
GAAGGAACTAACCAACACCACCTACTGTAGTAGTAAAGTCTCGCCCGAGG
CGCGTGGTCAATGGTCTCGGGACTACGGCAAGCACTACGTGAGTACATAT
ATATATATGTCCGTATAGTAAAGTACGACTGAAGCGCTTCCGAGTGATAT
ATATTAAAGTACGAATGAAGCGCTTCGGAGTGCTAGGAGGTATCACAGCC
GAATGCCAACCCTGCCCCCCACCCCCCCCCGGACCGTCAGCTCTGTAGGG
GCGGTCTCTTCGCTGAGCGGGGGGGGAAGCTACCGCAAGAGCAGCACCAG
CGGCGGGGGCGGCAAGCTGTCTTTCTGCTCCGAGCTGGGGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1269156..1271347+

>mRNA_S-ischiensis_contig9.20546.1 ID=mRNA_S-ischiensis_contig9.20546.1|Name=mRNA_S-ischiensis_contig9.20546.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=582bp|location=Sequence derived from alignment at S-ischiensis_contig9:1269156..1271347+ (Schizocladia ischiensis KU_0333)
GCGAGGGAGCCTGAGCTCGGGGGGGGGGCACCACCACCACAGGAGGAGCG
GCGGCAGCAGCGCCTCGACGGGGTCCTCCTCCTCCTCCACCTCCGCTTTG
GCCCCGAAGAGCGCGGGCCCGAGCTTGTCCGGCAGCGTGTCCTCTGCCCG
CACCAGCACGTCTTCCCGGCCCACCTCAGCCCGCCTCAGGCGAGGGAGCC
TGAGCTCGGGGGGGGGGCACCACCACCACAGGAGGAGCGGCGGCAGCAGC
GCCTCGACGGGGTCCTCCTCCTCCTCCACCTCCGCTTTGGCCCCGAAGAG
CGCGGGCCCGAGCTTGTCCGGCAGCGTGTCCTCTGCCCGCACCAGCACGT
CTTCCCGGCCCACCTCAGCCCGCCTCAGCTCTGTAGGGGCGGTCTCTTCG
CTGAGCGGGGGGGGAAGCTACCGCAAGAGCAGCACCAGCGGCGGGGGCGG
CAAGCTGTCTTTCTGCTCCGAGCTGGGGCCCTCTGTAGGGGCGGTCTCTT
CGCTGAGCGGGGGGGGAAGCTACCGCAAGAGCAGCACCAGCGGCGGGGGC
GGCAAGCTGTCTTTCTGCTCCGAGCTGGGGCC
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