mRNA_S-ischiensis_contig9.20537.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20537.1
Unique NamemRNA_S-ischiensis_contig9.20537.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1191449..1194503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size3055
Cds size1938
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20537.1prot_S-ischiensis_contig9.20537.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1191471..1193408 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.6853447-UTR-S-ischiensis_contig9:1191448..11914701622817371.6853447-UTR-S-ischiensis_contig9:1191448..1191470Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1191449..1191470 +
1695741063.4310486-UTR-S-ischiensis_contig9:1191448..11914701695741063.4310486-UTR-S-ischiensis_contig9:1191448..1191470Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1191449..1191470 +
1622817371.7080069-UTR-S-ischiensis_contig9:1193408..11945031622817371.7080069-UTR-S-ischiensis_contig9:1193408..1194503Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1193409..1194503 +
1695741063.4605854-UTR-S-ischiensis_contig9:1193408..11945031695741063.4605854-UTR-S-ischiensis_contig9:1193408..1194503Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1193409..1194503 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.6962612-CDS-S-ischiensis_contig9:1191470..11934081622817371.6962612-CDS-S-ischiensis_contig9:1191470..1193408Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1191471..1193408 +
1695741063.4451494-CDS-S-ischiensis_contig9:1191470..11934081695741063.4451494-CDS-S-ischiensis_contig9:1191470..1193408Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1191471..1193408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20537.1

>prot_S-ischiensis_contig9.20537.1 ID=prot_S-ischiensis_contig9.20537.1|Name=mRNA_S-ischiensis_contig9.20537.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=646bp
MTCMGSRRAGSPPPVRIAHVVGGLLLPFNVVSGALLPPRRSRASGANSRI
GTMAWTLVMAGAGRGHRRFVKRHFPRDTRPGLRTGVPSRDWPLHARAGGD
IQGAQRRARQRIEAAGEHGDWEGALHELSQAAKFNLLNSFLYTATINVLG
KSNPPRWEKAIDLLREMPGRGVPSDVFAYTATISACARAGRSGEALELLV
QAQDNGVRPNVWTFAAAIDACAKAGQCDEALGLLRKIEEDGPRPNAHCFT
AAIDACANAGRCGEALGLLAHMEGSGIRPNVRSFAAAINACAKAGRSDEA
LELLARMEGSGVRPNIRSFTSAIDACAKDGRCDEALELLARMGGSGAPPN
RLSFAAAINACAKAGRADEALELLRRMEQKGPRPNVRVFTSAFDACANAG
RCGEALGLLARMEGSAVPPNVWSFAAAINACAKAGRSDEALELLRRMEQT
GLHPNVQAFTAAIDACANAGRCDEALGLLARMEGSGAPPNALSFAAAVKA
CAKAARSGEALRLLRYMQEKGPRPSNQVFTAAIDACAKAGRCDEALGLLK
AMEEGEGPRPNTQAFTAAIDACARAGRCDEALGLLARMERAGCPPNLQTF
TVAMYGCTHGGRCRDALELLTIMRVRSITPNLTSYNSAILACCAS*
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mRNA from alignment at S-ischiensis_contig9:1191449..1194503+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20537.1 ID=mRNA_S-ischiensis_contig9.20537.1|Name=mRNA_S-ischiensis_contig9.20537.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3055bp|location=Sequence derived from alignment at S-ischiensis_contig9:1191449..1194503+ (Schizocladia ischiensis KU_0333)
GGCGAACCATCGCGTGCAAGCGATGACTTGCATGGGGAGCCGGCGGGCGG
GCAGCCCGCCACCTGTGCGTATTGCACACGTGGTGGGGGGCCTTCTGCTG
CCATTCAATGTGGTATCTGGAGCCCTACTGCCGCCGCGGCGCTCGCGAGC
GAGCGGTGCCAACTCCAGGATCGGGACCATGGCTTGGACCTTGGTCATGG
CTGGGGCGGGGCGGGGACATCGCAGATTCGTGAAACGCCACTTCCCACGC
GACACGCGCCCGGGTTTGCGTACCGGGGTTCCATCCCGAGACTGGCCATT
GCACGCACGGGCAGGCGGGGACATCCAGGGGGCCCAGAGGCGGGCGAGGC
AAAGGATTGAGGCCGCCGGTGAGCACGGGGACTGGGAAGGCGCCTTGCAC
GAGCTGTCACAGGCAGCGAAATTTAACCTGCTAAACAGCTTCCTCTACAC
TGCTACGATCAATGTGCTGGGGAAGAGCAACCCACCACGGTGGGAGAAGG
CCATTGACCTCCTGCGAGAGATGCCTGGGCGGGGCGTTCCCAGCGACGTG
TTTGCCTACACGGCCACCATCAGCGCGTGCGCGAGGGCCGGGCGTAGCGG
CGAGGCGCTGGAGCTGCTGGTGCAAGCCCAGGATAATGGTGTCCGTCCGA
ATGTCTGGACCTTCGCTGCCGCGATCGACGCGTGCGCCAAGGCCGGGCAG
TGCGACGAGGCGCTGGGGCTGCTGAGGAAAATTGAGGAGGACGGGCCCCG
TCCCAACGCCCACTGCTTCACAGCCGCTATCGACGCGTGCGCCAACGCTG
GGCGTTGCGGCGAGGCGCTGGGGCTGCTGGCACACATGGAGGGGTCGGGC
ATCCGCCCCAATGTAAGGAGCTTCGCCGCCGCAATCAACGCGTGCGCAAA
GGCCGGGCGCTCGGACGAGGCGCTGGAGCTGCTGGCACGCATGGAGGGGT
CGGGCGTCCGCCCCAATATAAGGAGCTTCACCTCCGCTATCGACGCGTGC
GCCAAGGACGGGCGCTGCGACGAGGCGCTGGAGCTGCTGGCACGCATGGG
GGGGTCGGGCGCCCCTCCCAATAGATTGAGCTTCGCCGCTGCGATCAACG
CGTGCGCAAAGGCCGGGCGCGCGGACGAGGCACTGGAGCTGCTGCGGCGC
ATGGAGCAGAAGGGCCCACGCCCCAATGTCCGGGTCTTCACCTCCGCTTT
TGACGCGTGCGCCAACGCTGGGCGTTGCGGCGAGGCGCTGGGGCTGCTGG
CGCGCATGGAGGGGTCGGCCGTGCCTCCCAACGTATGGAGCTTCGCCGCA
GCGATCAACGCTTGCGCAAAGGCCGGGCGCTCGGACGAGGCGCTGGAGCT
GCTGCGGCGCATGGAGCAGACGGGACTGCACCCCAACGTCCAGGCCTTCA
CCGCCGCGATCGATGCGTGCGCCAACGCCGGGCGTTGCGACGAGGCGCTG
GGGCTGCTGGCGCGCATGGAGGGGTCGGGCGCCCCGCCCAACGCGTTGAG
TTTCGCCGCAGCGGTCAAAGCGTGCGCAAAGGCAGCTCGCAGCGGCGAGG
CCCTGCGGCTGCTGCGTTACATGCAGGAGAAGGGGCCCCGCCCCAGCAAC
CAGGTCTTCACCGCCGCGATCGACGCGTGCGCAAAGGCCGGGCGCTGCGA
CGAGGCGCTGGGATTGCTCAAGGCAATGGAGGAGGGGGAGGGCCCCCGCC
CCAACACCCAGGCCTTCACCGCCGCGATCGACGCCTGCGCGAGGGCCGGG
CGCTGCGACGAGGCGCTGGGGCTGCTGGCGCGCATGGAGCGGGCCGGTTG
TCCCCCCAACCTCCAGACCTTCACCGTCGCCATGTACGGGTGCACGCACG
GCGGGCGTTGCCGCGACGCGCTGGAGCTGCTCACGATAATGAGGGTGAGG
TCCATCACCCCCAACCTCACGAGCTATAACTCGGCGATCCTTGCGTGTTG
CGCGAGCTGAAACCCCCCGGGGGCGGGCGGGGCCGGAGCCTCCGCCTGGG
GGAGGCGGTCACGTTGTACCTACACCATGGTGAGGCGTCCGTCGGGGGGG
GGCGCTTCAGCTGTTATCTGTTACTTAGAGTACCTTAGAGGGTTACGTAG
CTAATGTAGTACTTCGTGCTACCGTCTCGTGTGCAGTGCTACGTGCTTGA
GTAGCTACATCCAGAGCCAGTGTACTTCGAAGTACAGTACCATACCTTCA
TCACTTAGGTACAGTAGTTGCAGTGAGGAGTTGGTGCGCACCGTCACCAA
CTTGTCAGGCGTACGTGTGCCCTTGTCCGTGTTGGCGGGGAATTAATGCG
CCACCTTGCCCTGGAGGGTTGATGGCGGAAGCCGCCGAGTCCCGTCGCGA
TCGTGGCAACATCCGGGGCCACAGTGACTGCATTTTTTGGAAGTACAAAG
TACTGTAGCGCGCACTACGATGTTGTAGTGCGCCTCGGGTCGTCGTGCCT
TGCGTGATTGTGGGTAAGTTATCGCTCGCCCAAACCCTCCGTAGCATAGC
CGGTGTCCCCGATAGAAGGAAAGAGCGAGGGCTGCTGTGCAGTGAGGTGA
TTTTTGGTCGACGGTCACGTATGCCGCGGCAAGCAACCATGAGTTAGGAA
GTACACATTGTGCTGTAGTAGTGTTGACTACTGTACTGCAGTGCGCTTGC
GGTGGTACAGTAGTGCCTGTGCATTTACGCAGTGTCATACAACCTCGGCG
TCCGGCCGGAGGCCCTATTAACCAATAACACGAGATGCACCCTGGGGGAA
ACTTGTATTGTCGCCGTTGTACCGTTGGATTGTCGGCTTCTTCTGCCCGC
CGGGGGGACCGGCCCGTTGCGTGGCCCAATGGCAAGGCACCCGTGAAACA
GCAACGGAATTCACTCATCTCTCTGTGACTCGGCCCGTGTCCCGGACCTG
CACTTCACATCCCCCATGAGCAGTCGGGGTGTCCCGGGGTCCCGGAGTCC
TCTAACTTGAGTACTCGTACCTCCTCTACTTACCAAGTACTTACAGGTAG
CCCCGCTACAAAAAAGGTATCCCATTTTTTTACTTTTTAGGTCCAAATGT
GGCAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1191449..1194503+

>mRNA_S-ischiensis_contig9.20537.1 ID=mRNA_S-ischiensis_contig9.20537.1|Name=mRNA_S-ischiensis_contig9.20537.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3876bp|location=Sequence derived from alignment at S-ischiensis_contig9:1191449..1194503+ (Schizocladia ischiensis KU_0333)
ATGACTTGCATGGGGAGCCGGCGGGCGGGCAGCCCGCCACCTGTGCGTAT
TGCACACGTGGTGGGGGGCCTTCTGCTGCCATTCAATGTGGTATCTGGAG
CCCTACTGCCGCCGCGGCGCTCGCGAGCGAGCGGTGCCAACTCCAGGATC
GGGACCATGGCTTGGACCTTGGTCATGGCTGGGGCGGGGCGGGGACATCG
CAGATTCGTGAAACGCCACTTCCCACGCGACACGCGCCCGGGTTTGCGTA
CCGGGGTTCCATCCCGAGACTGGCCATTGCACGCACGGGCAGGCGGGGAC
ATCCAGGGGGCCCAGAGGCGGGCGAGGCAAAGGATTGAGGCCGCCGGTGA
GCACGGGGACTGGGAAGGCGCCTTGCACGAGCTGTCACAGGCAGCGAAAT
TTAACCTGCTAAACAGCTTCCTCTACACTGCTACGATCAATGTGCTGGGG
AAGAGCAACCCACCACGGTGGGAGAAGGCCATTGACCTCCTGCGAGAGAT
GCCTGGGCGGGGCGTTCCCAGCGACGTGTTTGCCTACACGGCCACCATCA
GCGCGTGCGCGAGGGCCGGGCGTAGCGGCGAGGCGCTGGAGCTGCTGGTG
CAAGCCCAGGATAATGGTGTCCGTCCGAATGTCTGGACCTTCGCTGCCGC
GATCGACGCGTGCGCCAAGGCCGGGCAGTGCGACGAGGCGCTGGGGCTGC
TGAGGAAAATTGAGGAGGACGGGCCCCGTCCCAACGCCCACTGCTTCACA
GCCGCTATCGACGCGTGCGCCAACGCTGGGCGTTGCGGCGAGGCGCTGGG
GCTGCTGGCACACATGGAGGGGTCGGGCATCCGCCCCAATGTAAGGAGCT
TCGCCGCCGCAATCAACGCGTGCGCAAAGGCCGGGCGCTCGGACGAGGCG
CTGGAGCTGCTGGCACGCATGGAGGGGTCGGGCGTCCGCCCCAATATAAG
GAGCTTCACCTCCGCTATCGACGCGTGCGCCAAGGACGGGCGCTGCGACG
AGGCGCTGGAGCTGCTGGCACGCATGGGGGGGTCGGGCGCCCCTCCCAAT
AGATTGAGCTTCGCCGCTGCGATCAACGCGTGCGCAAAGGCCGGGCGCGC
GGACGAGGCACTGGAGCTGCTGCGGCGCATGGAGCAGAAGGGCCCACGCC
CCAATGTCCGGGTCTTCACCTCCGCTTTTGACGCGTGCGCCAACGCTGGG
CGTTGCGGCGAGGCGCTGGGGCTGCTGGCGCGCATGGAGGGGTCGGCCGT
GCCTCCCAACGTATGGAGCTTCGCCGCAGCGATCAACGCTTGCGCAAAGG
CCGGGCGCTCGGACGAGGCGCTGGAGCTGCTGCGGCGCATGGAGCAGACG
GGACTGCACCCCAACGTCCAGGCCTTCACCGCCGCGATCGATGCGTGCGC
CAACGCCGGGCGTTGCGACGAGGCGCTGGGGCTGCTGGCGCGCATGGAGG
GGTCGGGCGCCCCGCCCAACGCGTTGAGTTTCGCCGCAGCGGTCAAAGCG
TGCGCAAAGGCAGCTCGCAGCGGCGAGGCCCTGCGGCTGCTGCGTTACAT
GCAGGAGAAGGGGCCCCGCCCCAGCAACCAGGTCTTCACCGCCGCGATCG
ACGCGTGCGCAAAGGCCGGGCGCTGCGACGAGGCGCTGGGATTGCTCAAG
GCAATGGAGGAGGGGGAGGGCCCCCGCCCCAACACCCAGGCCTTCACCGC
CGCGATCGACGCCTGCGCGAGGGCCGGGCGCTGCGACGAGGCGCTGGGGC
TGCTGGCGCGCATGGAGCGGGCCGGTTGTCCCCCCAACCTCCAGACCTTC
ACCGTCGCCATGTACGGGTGCACGCACGGCGGGCGTTGCCGCGACGCGCT
GGAGCTGCTCACGATAATGAGGGTGAGGTCCATCACCCCCAACCTCACGA
GCTATAACTCGGCGATCCTTGCGTGTTGCGCGAGCTGAATGACTTGCATG
GGGAGCCGGCGGGCGGGCAGCCCGCCACCTGTGCGTATTGCACACGTGGT
GGGGGGCCTTCTGCTGCCATTCAATGTGGTATCTGGAGCCCTACTGCCGC
CGCGGCGCTCGCGAGCGAGCGGTGCCAACTCCAGGATCGGGACCATGGCT
TGGACCTTGGTCATGGCTGGGGCGGGGCGGGGACATCGCAGATTCGTGAA
ACGCCACTTCCCACGCGACACGCGCCCGGGTTTGCGTACCGGGGTTCCAT
CCCGAGACTGGCCATTGCACGCACGGGCAGGCGGGGACATCCAGGGGGCC
CAGAGGCGGGCGAGGCAAAGGATTGAGGCCGCCGGTGAGCACGGGGACTG
GGAAGGCGCCTTGCACGAGCTGTCACAGGCAGCGAAATTTAACCTGCTAA
ACAGCTTCCTCTACACTGCTACGATCAATGTGCTGGGGAAGAGCAACCCA
CCACGGTGGGAGAAGGCCATTGACCTCCTGCGAGAGATGCCTGGGCGGGG
CGTTCCCAGCGACGTGTTTGCCTACACGGCCACCATCAGCGCGTGCGCGA
GGGCCGGGCGTAGCGGCGAGGCGCTGGAGCTGCTGGTGCAAGCCCAGGAT
AATGGTGTCCGTCCGAATGTCTGGACCTTCGCTGCCGCGATCGACGCGTG
CGCCAAGGCCGGGCAGTGCGACGAGGCGCTGGGGCTGCTGAGGAAAATTG
AGGAGGACGGGCCCCGTCCCAACGCCCACTGCTTCACAGCCGCTATCGAC
GCGTGCGCCAACGCTGGGCGTTGCGGCGAGGCGCTGGGGCTGCTGGCACA
CATGGAGGGGTCGGGCATCCGCCCCAATGTAAGGAGCTTCGCCGCCGCAA
TCAACGCGTGCGCAAAGGCCGGGCGCTCGGACGAGGCGCTGGAGCTGCTG
GCACGCATGGAGGGGTCGGGCGTCCGCCCCAATATAAGGAGCTTCACCTC
CGCTATCGACGCGTGCGCCAAGGACGGGCGCTGCGACGAGGCGCTGGAGC
TGCTGGCACGCATGGGGGGGTCGGGCGCCCCTCCCAATAGATTGAGCTTC
GCCGCTGCGATCAACGCGTGCGCAAAGGCCGGGCGCGCGGACGAGGCACT
GGAGCTGCTGCGGCGCATGGAGCAGAAGGGCCCACGCCCCAATGTCCGGG
TCTTCACCTCCGCTTTTGACGCGTGCGCCAACGCTGGGCGTTGCGGCGAG
GCGCTGGGGCTGCTGGCGCGCATGGAGGGGTCGGCCGTGCCTCCCAACGT
ATGGAGCTTCGCCGCAGCGATCAACGCTTGCGCAAAGGCCGGGCGCTCGG
ACGAGGCGCTGGAGCTGCTGCGGCGCATGGAGCAGACGGGACTGCACCCC
AACGTCCAGGCCTTCACCGCCGCGATCGATGCGTGCGCCAACGCCGGGCG
TTGCGACGAGGCGCTGGGGCTGCTGGCGCGCATGGAGGGGTCGGGCGCCC
CGCCCAACGCGTTGAGTTTCGCCGCAGCGGTCAAAGCGTGCGCAAAGGCA
GCTCGCAGCGGCGAGGCCCTGCGGCTGCTGCGTTACATGCAGGAGAAGGG
GCCCCGCCCCAGCAACCAGGTCTTCACCGCCGCGATCGACGCGTGCGCAA
AGGCCGGGCGCTGCGACGAGGCGCTGGGATTGCTCAAGGCAATGGAGGAG
GGGGAGGGCCCCCGCCCCAACACCCAGGCCTTCACCGCCGCGATCGACGC
CTGCGCGAGGGCCGGGCGCTGCGACGAGGCGCTGGGGCTGCTGGCGCGCA
TGGAGCGGGCCGGTTGTCCCCCCAACCTCCAGACCTTCACCGTCGCCATG
TACGGGTGCACGCACGGCGGGCGTTGCCGCGACGCGCTGGAGCTGCTCAC
GATAATGAGGGTGAGGTCCATCACCCCCAACCTCACGAGCTATAACTCGG
CGATCCTTGCGTGTTGCGCGAGCTGA
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