mRNA_S-ischiensis_contig9.20531.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20531.1
Unique NamemRNA_S-ischiensis_contig9.20531.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20531.1 vs. uniprot
Match: A0A6H5JTZ0_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ0_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 7.670e-11
Identity = 107/377 (28.38%), Postives = 158/377 (41.91%), Query Frame = -3 
Query: 1482 VIKTNMGENKRMVEIGSASAAASFAELEKAIRLTYE--TSPDDKLTLTYTDAEGDDVTFDTDAELALAVRTCSSPLRVTVK----------CQGTAPQTQATAA------------------DAMDEDDE-DIVLLDADDEEMGRSDNDPVSGATTADQXXXXXXXXXXXXXA-----EVSKSPEASPLFKRAAGRLGRVHGVDITPTQLAAALTLLQLRPRVLAKRGLAPARFLRAGAAGGEDTSSGAEEDIDKDSKDKKSTEEASAQPEPSGVRAGPCPRPCPKGQGHCGPRGHQGGHRHGPGGRMPPMGPVAVAFWKNGIELAPPQVRALLRALGVGPRQLVKVGLLDMNKLRSLRAFHLGWQAAAHAHGPRAG 2504
            ++K  +  + R++EI +      F EL K +   Y      + +LT TY D +GD+V FDT+AEL LA+RT S PLR+ V              + P  +AT+A                   A+   DE D++++D   E    +   P  G+    Q             A       ++ PE S L+++A+ RL +   V +TPTQL   + L Q++ R L   GLAP R L A AA        A  D+D       S++E   + +PS VR                  G +       G  +     V      NG+EL   +V+ LL+AL V  R+LV++GLL    L  +   H        A GPR G
Sbjct:    4 LVKIKLDGDLRIMEIPNPPR---FDELVKTVMDAYSMPAGVEQQLTFTYKDNDGDEVRFDTNAELDLAIRTSSVPLRIMVANPPXXXXXXXXSRSTPNPEATSAAPPSIPSTPGYAVASNVGSAVGGGDEPDMIMVDMPGEAAAAAAG-PSGGSVDGSQADGPEKEAINPQAAFEAEAAAARDPEGSLLYQKASMRLAKRFKVHLTPTQLWRVMALFQIQGRQLVVFGLAPHRSLDAAAA--------AASDLD-------SSDEEGGENKPSAVR------------------GLKRSKSQVAGTIVADH--VQRLLGLNGVELPEDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHY----HRDAKGPRGG 337
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BLAST of mRNA_S-ischiensis_contig9.20531.1 vs. uniprot
Match: D8LFK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK7_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 8.780e-10
Identity = 96/340 (28.24%), Postives = 136/340 (40.00%), Query Frame = -3 
Query: 1482 KLTLTYTDAEGDDVTFDTDAELALAVRTCSSPLRVTVK--------------CQGTAPQTQATAADAMD-------------------EDDEDIVLLDADDEEMGRSDNDPVSGATTADQXXXXXXXXXXXXXA-----EVSKSPEASPLFKRAAGRLGRVHGVDITPTQLAAALTLLQLRPRVLAKRGLAPARFLRAGAAGGEDTSSGAEEDIDKDSKDKKSTEEASAQPEPSGVRAGPCPRPCPKGQGHCGPRGHQGGHRHGPG--GRMPPMGPVAVAFWKNGIELAPPQVRALLRALGVGPRQLVKVGLLDMNKLRSLRAFHLGWQAAAHAHGPRAG 2381
            +LT TY D EGD+V FDT+AEL LA+RT S PLR+ V                  + P  +AT+A                        DD D++++D   E    +   P  G+    Q             A       ++ PE S L+++++ RL +   V +TPTQL   + L Q++ R L   GLAP R L A A       S A  D+D       S++E   + +PS VR                      G +       R      V      NG+EL   +V+ LL+AL V  R+LV++GLL    L  +   H          GPR G
Sbjct:   13 QLTFTYKDNEGDEVRFDTNAELDLALRTSSVPLRIMVANPXXXXXXXXXXXXXXRSTPNPEATSAAPPSIPSTPGYAVASNVGSVVGGGDDADMIMVDMPGEAAAAAAAGPSGGSVDGSQADGPEKEAINPQAAFEAEAAAARDPEGSLLYQKSSMRLAKRFKVHLTPTQLWRVMALFQIQGRQLVVFGLAPHRSLDASA-------SAAASDVD-------SSDEEGGENKPSAVR----------------------GLKRSKSQVARTIVADHVQRLLILNGVELPGDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHY----HRDGKGPRGG 312
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTZ0_9PHAE7.670e-1128.38PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LFK7_ECTSI8.780e-1028.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1142085..1144770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2686
Cds size1626
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20531.1prot_S-ischiensis_contig9.20531.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1143053..1144678 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.626314-UTR-S-ischiensis_contig9:1142084..11430521622817371.626314-UTR-S-ischiensis_contig9:1142084..1143052Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1142085..1143052 +
1695741063.4004366-UTR-S-ischiensis_contig9:1142084..11430521695741063.4004366-UTR-S-ischiensis_contig9:1142084..1143052Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1142085..1143052 +
1622817371.6516118-UTR-S-ischiensis_contig9:1144678..11447701622817371.6516118-UTR-S-ischiensis_contig9:1144678..1144770Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1144679..1144770 +
1695741063.4204168-UTR-S-ischiensis_contig9:1144678..11447701695741063.4204168-UTR-S-ischiensis_contig9:1144678..1144770Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1144679..1144770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.6397073-CDS-S-ischiensis_contig9:1143052..11446781622817371.6397073-CDS-S-ischiensis_contig9:1143052..1144678Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1143053..1144678 +
1695741063.4103985-CDS-S-ischiensis_contig9:1143052..11446781695741063.4103985-CDS-S-ischiensis_contig9:1143052..1144678Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1143053..1144678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20531.1

>prot_S-ischiensis_contig9.20531.1 ID=prot_S-ischiensis_contig9.20531.1|Name=mRNA_S-ischiensis_contig9.20531.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=542bp
MPAPHAGGLPPSPLMPCPHPLKGALLAPPSHSSVEVLVGRDVTVAPTLAA
PATPATEVVASTAATVHGATTTAAAVWAMAHAAHVGAGGGWGAGVHVHPH
LASGGARGGVRAAIRLGPRLLVLLQLRRHVRGHEVHVWRHEVHVGGAPSG
PGRRFTTPPTPTTAAAATAVAASPGSMGMGGRLPAEVERPEAPQLVHVQQ
ADLHQLPWAHAECPQQRTDLRGRQLDAVLPEGDGHGPHGGHAAAGAVAVA
ALVAPGATVTLPLGARPGARPGPHTRGLRLRGRLLRALLVLAVLVDVLLS
ARGRVFPPCGPGAEEAGGGKAPLRKHPGAELQEGQCRRQLRRRDVHAVHP
AQAPSSPLEQRARLGALGDLGLGGGGDRFVVGVTLVGRCRAGDRVVIGAA
HLLIIGIQEHDVLVVLIHGIGGSGLGLRSCPLALDGHPQWRAAGADSKGK
LGVRVERHVVALGVRVGEGELVVRGGLVGQADGLLELREGSGGGGAPDFH
HALVLAHVGLDHDRVAHLGRARQQPGRKGRRCVLRPDEGDD*
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mRNA from alignment at S-ischiensis_contig9:1142085..1144770+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20531.1 ID=mRNA_S-ischiensis_contig9.20531.1|Name=mRNA_S-ischiensis_contig9.20531.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2686bp|location=Sequence derived from alignment at S-ischiensis_contig9:1142085..1144770+ (Schizocladia ischiensis KU_0333)
GCATGACCAGAAGCCCTTCTTGGCTGCGTTTACAATATAGTGCGCATGCA
TTTCCGGTAGCCAAAAACGCCGAATTCTCAGCTGAGTGAAATTGCCGTGA
CTTGGAATGCTCCAATTCCCCAGTACTGTACAGGAGCCACACTATAGTAC
GTCCCGACATTTTGCAGGGCTGTTGCCATCATGATACCATTGTATAGGCC
GAAAAGAGTGCGGCGGTCGCTCAGGTCACTGCTCAGCTGCTCAGCTGCGA
CAGTGCCACGGCAAGAAGCTCTGTTTTTGGTTTTGTGGGGCTGAAACCCA
CTTTTTATTTCTTTTTCCTTTTCTCGATGACCAAACACGAAACACACAGG
CAGGCCCGGTCTCGATGAGTGAGACACATAGCCCATGCGAGACCAGGCGG
GGCCGTTGCCTGTTACTTCGCTACACTTGCAGCAGACGGCTTATGGCGCG
TGTTGTGCGCCGGCGTCGCTCATTCACCCACTTCCTGTCACTGGCACCCT
CAGAACACGGGCCGCGGGCGCACACAGGCGCAAAAACACCACTCGCACGA
CTTATGCGACTCGTGTACAAGTACTTCATGCATGCACACGGTCGCGGCGT
TGCTTCCCAGAACCATGACCCCACCAACACCCAAACCCGCCCTGCGCTTC
GCGCCACCCTGGGCCACAGGGCCTGTCGGCTGGGCTGACGCCAAAGCATA
ACGACGCAAGTTGTTTGCTTGCGCCTTCTCAACACAATGCCCACCCGCCA
ACTCAAACCATACCCATTGCAGAAGGGGAGAGGCTGTATACGGCAAGGGC
AAAGGCACACTCGCCAAAAGGCGTGCGCACGCTTGCTCTCCCATTTCAAG
TCCTCGTTCCAGTCTTCCAAGGACCAACCTCTCCCTCGCAGCTGCAAAAA
TACAAACGAGACAATCCAAAGACCAGCTGGCTATCGTACGCAAGCCGCCA
CCCACATGCACCGGTGAAATGCCAGCGCCGCATGCAGGGGGCCTGCCGCC
GTCTCCTCTCATGCCCTGCCCCCACCCCTTGAAGGGCGCCTTACTTGCGC
CCCCATCCCATTCCAGCGTCGAAGTCCTGGTGGGGCGAGACGTAACAGTC
GCGCCCACACTAGCGGCGCCCGCCACCCCTGCGACCGAAGTGGTTGCCTC
CACCGCAGCCACCGTACATGGGGCCACCACCACCGCAGCTGCGGTTTGGG
CCATGGCCCACGCCGCGCATGTTGGGGCCGGGGGGGGCTGGGGCGCCGGG
GTACATGTGCACCCACATCTGGCATCCGGAGGGGCCAGGGGGGGCGTGCG
TGCGGCCATACGGCTGGGCCCGCGGCTGCTGGTGCTGCTGCAGCTGCGCC
GCCACGTGCGGGGGCATGAAGTCCACGTGTGGCGGCATGAAGTGCATGTG
GGGGGCGCCCCAAGCGGCCCGGGGCGGCGCTTCACCACCCCACCCACCCC
CACCACCGCTGCTGCGGCCACCGCAGTGGCGGCCAGCCCGGGGTCCATGG
GCATGGGCGGCCGCCTGCCAGCCGAGGTGGAACGCCCGGAGGCTCCTCAG
CTTGTTCATGTCCAGCAGGCCGACCTTCACCAGCTGCCGTGGGCCCACGC
CGAGTGCCCGCAGCAGCGCACGGACCTGCGGGGGCGCCAGCTCGATGCCG
TTCTTCCAGAAGGCGACGGCCACGGGCCCCATGGGGGGCATGCGGCCGCC
GGGGCCGTGGCGGTGGCCGCCCTGGTGGCCCCGGGGGCCACAGTGACCCT
GCCCCTTGGGGCAAGGCCGGGGGCAAGGCCCGGCCCTCACACCCGAGGGC
TCAGGCTGCGCGGACGCCTCCTCCGTGCTCTTCTTGTCCTTGCTGTCCTT
GTCGATGTCCTCCTCAGCGCCAGAGGACGTGTCTTCCCCCCCTGCGGCCC
CGGCGCGGAGGAAGCGGGCGGGGGCAAGGCCCCGCTTCGCAAGCACCCGG
GGGCGGAGCTGCAGGAGGGTCAGTGCCGCCGCCAGCTGCGTCGGCGTGAT
GTCCACGCCGTGCACCCGGCCCAGGCGCCCAGCAGCCCTCTTGAACAGCG
GGCTCGCCTCGGGGCTCTTGGAGACCTCGGCCTCGGCGGCGGCGGAGACA
GGTTCGTTGTCGGAGTCACCTTGGTCGGCCGTTGTCGCGCCGGAGACAGG
GTCGTTATCGGAGCGGCCCATCTCCTCATCATCGGCATCCAGGAGCACGA
TGTCCTCGTCGTCCTCATCCATGGCATCGGCGGCAGTGGCCTGGGTCTGC
GGAGCTGTCCCCTGGCACTTGACGGTCACCCGCAGTGGCGAGCTGCAGGT
GCGGACAGCAAGGGCAAGCTCGGCGTCCGTGTCGAACGTCACGTCGTCGC
CCTCGGCGTCCGTGTAGGTGAGGGTGAGCTTGTCGTCAGGGGAGGTCTCG
TAGGTCAGGCGGATGGCCTTCTCGAGCTCCGCGAAGGAAGCGGCGGCGGA
GGCGCTCCCGATTTCCACCATGCGCTTGTTCTCGCCCATGTTGGTCTTGA
TCACGATAGAGTTGCTCATCTGGGCAGGGCACGACAGCAACCAGGAAGGA
AGGGACGAAGGTGCGTGTTAAGGCCTGATGAAGGCGACGACTAGGCGTAC
AGGCGACGACGGCAGACAGTCTCTTCTCACTCACTAAACTGACTCGCTGT
GTTCAACCAAACCCCCGCCCTCCCCCTGGGCACCTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1142085..1144770+

>mRNA_S-ischiensis_contig9.20531.1 ID=mRNA_S-ischiensis_contig9.20531.1|Name=mRNA_S-ischiensis_contig9.20531.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=3252bp|location=Sequence derived from alignment at S-ischiensis_contig9:1142085..1144770+ (Schizocladia ischiensis KU_0333)
ATGCCAGCGCCGCATGCAGGGGGCCTGCCGCCGTCTCCTCTCATGCCCTG
CCCCCACCCCTTGAAGGGCGCCTTACTTGCGCCCCCATCCCATTCCAGCG
TCGAAGTCCTGGTGGGGCGAGACGTAACAGTCGCGCCCACACTAGCGGCG
CCCGCCACCCCTGCGACCGAAGTGGTTGCCTCCACCGCAGCCACCGTACA
TGGGGCCACCACCACCGCAGCTGCGGTTTGGGCCATGGCCCACGCCGCGC
ATGTTGGGGCCGGGGGGGGCTGGGGCGCCGGGGTACATGTGCACCCACAT
CTGGCATCCGGAGGGGCCAGGGGGGGCGTGCGTGCGGCCATACGGCTGGG
CCCGCGGCTGCTGGTGCTGCTGCAGCTGCGCCGCCACGTGCGGGGGCATG
AAGTCCACGTGTGGCGGCATGAAGTGCATGTGGGGGGCGCCCCAAGCGGC
CCGGGGCGGCGCTTCACCACCCCACCCACCCCCACCACCGCTGCTGCGGC
CACCGCAGTGGCGGCCAGCCCGGGGTCCATGGGCATGGGCGGCCGCCTGC
CAGCCGAGGTGGAACGCCCGGAGGCTCCTCAGCTTGTTCATGTCCAGCAG
GCCGACCTTCACCAGCTGCCGTGGGCCCACGCCGAGTGCCCGCAGCAGCG
CACGGACCTGCGGGGGCGCCAGCTCGATGCCGTTCTTCCAGAAGGCGACG
GCCACGGGCCCCATGGGGGGCATGCGGCCGCCGGGGCCGTGGCGGTGGCC
GCCCTGGTGGCCCCGGGGGCCACAGTGACCCTGCCCCTTGGGGCAAGGCC
GGGGGCAAGGCCCGGCCCTCACACCCGAGGGCTCAGGCTGCGCGGACGCC
TCCTCCGTGCTCTTCTTGTCCTTGCTGTCCTTGTCGATGTCCTCCTCAGC
GCCAGAGGACGTGTCTTCCCCCCCTGCGGCCCCGGCGCGGAGGAAGCGGG
CGGGGGCAAGGCCCCGCTTCGCAAGCACCCGGGGGCGGAGCTGCAGGAGG
GTCAGTGCCGCCGCCAGCTGCGTCGGCGTGATGTCCACGCCGTGCACCCG
GCCCAGGCGCCCAGCAGCCCTCTTGAACAGCGGGCTCGCCTCGGGGCTCT
TGGAGACCTCGGCCTCGGCGGCGGCGGAGACAGGTTCGTTGTCGGAGTCA
CCTTGGTCGGCCGTTGTCGCGCCGGAGACAGGGTCGTTATCGGAGCGGCC
CATCTCCTCATCATCGGCATCCAGGAGCACGATGTCCTCGTCGTCCTCAT
CCATGGCATCGGCGGCAGTGGCCTGGGTCTGCGGAGCTGTCCCCTGGCAC
TTGACGGTCACCCGCAGTGGCGAGCTGCAGGTGCGGACAGCAAGGGCAAG
CTCGGCGTCCGTGTCGAACGTCACGTCGTCGCCCTCGGCGTCCGTGTAGG
TGAGGGTGAGCTTGTCGTCAGGGGAGGTCTCGTAGGTCAGGCGGATGGCC
TTCTCGAGCTCCGCGAAGGAAGCGGCGGCGGAGGCGCTCCCGATTTCCAC
CATGCGCTTGTTCTCGCCCATGTTGGTCTTGATCACGATAGAGTTGCTCA
TCTGGGCAGGGCACGACAGCAACCAGGAAGGAAGGGACGAAGGTGCGTGT
TAAGGCCTGATGAAGGCGACGACTAGATGCCAGCGCCGCATGCAGGGGGC
CTGCCGCCGTCTCCTCTCATGCCCTGCCCCCACCCCTTGAAGGGCGCCTT
ACTTGCGCCCCCATCCCATTCCAGCGTCGAAGTCCTGGTGGGGCGAGACG
TAACAGTCGCGCCCACACTAGCGGCGCCCGCCACCCCTGCGACCGAAGTG
GTTGCCTCCACCGCAGCCACCGTACATGGGGCCACCACCACCGCAGCTGC
GGTTTGGGCCATGGCCCACGCCGCGCATGTTGGGGCCGGGGGGGGCTGGG
GCGCCGGGGTACATGTGCACCCACATCTGGCATCCGGAGGGGCCAGGGGG
GGCGTGCGTGCGGCCATACGGCTGGGCCCGCGGCTGCTGGTGCTGCTGCA
GCTGCGCCGCCACGTGCGGGGGCATGAAGTCCACGTGTGGCGGCATGAAG
TGCATGTGGGGGGCGCCCCAAGCGGCCCGGGGCGGCGCTTCACCACCCCA
CCCACCCCCACCACCGCTGCTGCGGCCACCGCAGTGGCGGCCAGCCCGGG
GTCCATGGGCATGGGCGGCCGCCTGCCAGCCGAGGTGGAACGCCCGGAGG
CTCCTCAGCTTGTTCATGTCCAGCAGGCCGACCTTCACCAGCTGCCGTGG
GCCCACGCCGAGTGCCCGCAGCAGCGCACGGACCTGCGGGGGCGCCAGCT
CGATGCCGTTCTTCCAGAAGGCGACGGCCACGGGCCCCATGGGGGGCATG
CGGCCGCCGGGGCCGTGGCGGTGGCCGCCCTGGTGGCCCCGGGGGCCACA
GTGACCCTGCCCCTTGGGGCAAGGCCGGGGGCAAGGCCCGGCCCTCACAC
CCGAGGGCTCAGGCTGCGCGGACGCCTCCTCCGTGCTCTTCTTGTCCTTG
CTGTCCTTGTCGATGTCCTCCTCAGCGCCAGAGGACGTGTCTTCCCCCCC
TGCGGCCCCGGCGCGGAGGAAGCGGGCGGGGGCAAGGCCCCGCTTCGCAA
GCACCCGGGGGCGGAGCTGCAGGAGGGTCAGTGCCGCCGCCAGCTGCGTC
GGCGTGATGTCCACGCCGTGCACCCGGCCCAGGCGCCCAGCAGCCCTCTT
GAACAGCGGGCTCGCCTCGGGGCTCTTGGAGACCTCGGCCTCGGCGGCGG
CGGAGACAGGTTCGTTGTCGGAGTCACCTTGGTCGGCCGTTGTCGCGCCG
GAGACAGGGTCGTTATCGGAGCGGCCCATCTCCTCATCATCGGCATCCAG
GAGCACGATGTCCTCGTCGTCCTCATCCATGGCATCGGCGGCAGTGGCCT
GGGTCTGCGGAGCTGTCCCCTGGCACTTGACGGTCACCCGCAGTGGCGAG
CTGCAGGTGCGGACAGCAAGGGCAAGCTCGGCGTCCGTGTCGAACGTCAC
GTCGTCGCCCTCGGCGTCCGTGTAGGTGAGGGTGAGCTTGTCGTCAGGGG
AGGTCTCGTAGGTCAGGCGGATGGCCTTCTCGAGCTCCGCGAAGGAAGCG
GCGGCGGAGGCGCTCCCGATTTCCACCATGCGCTTGTTCTCGCCCATGTT
GGTCTTGATCACGATAGAGTTGCTCATCTGGGCAGGGCACGACAGCAACC
AGGAAGGAAGGGACGAAGGTGCGTGTTAAGGCCTGATGAAGGCGACGACT
AG
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