mRNA_S-ischiensis_contig9.20530.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20530.1
Unique NamemRNA_S-ischiensis_contig9.20530.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1138826..1139550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size725
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20530.1prot_S-ischiensis_contig9.20530.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1139112..1139477 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.571457-UTR-S-ischiensis_contig9:1138825..11391111622817371.571457-UTR-S-ischiensis_contig9:1138825..1139111Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1138826..1139111 +
1695741063.357377-UTR-S-ischiensis_contig9:1138825..11391111695741063.357377-UTR-S-ischiensis_contig9:1138825..1139111Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1138826..1139111 +
1622817371.5943406-UTR-S-ischiensis_contig9:1139477..11395501622817371.5943406-UTR-S-ischiensis_contig9:1139477..1139550Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1139478..1139550 +
1695741063.3889477-UTR-S-ischiensis_contig9:1139477..11395501695741063.3889477-UTR-S-ischiensis_contig9:1139477..1139550Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1139478..1139550 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.5825377-CDS-S-ischiensis_contig9:1139111..11394771622817371.5825377-CDS-S-ischiensis_contig9:1139111..1139477Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1139112..1139477 +
1695741063.3740156-CDS-S-ischiensis_contig9:1139111..11394771695741063.3740156-CDS-S-ischiensis_contig9:1139111..1139477Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1139112..1139477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20530.1

>prot_S-ischiensis_contig9.20530.1 ID=prot_S-ischiensis_contig9.20530.1|Name=mRNA_S-ischiensis_contig9.20530.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=122bp
MAAATEDPLNHTELSTTAQAFDVRVAPVGQELGELMGYLLPEMGLLPRAR
CGSGALGTGSRTPTRSLPPAAPLRRGRGGAAGAWGGQGQGTRGGRFASRV
RRVCVGIERARGVTKRFQIAV*
back to top

mRNA from alignment at S-ischiensis_contig9:1138826..1139550+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20530.1 ID=mRNA_S-ischiensis_contig9.20530.1|Name=mRNA_S-ischiensis_contig9.20530.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=725bp|location=Sequence derived from alignment at S-ischiensis_contig9:1138826..1139550+ (Schizocladia ischiensis KU_0333)
GGATCCTGGAGCATGGCGGGGGAGTTCCACCACACGTCGCGGGTCTCCGT
GAGCGCGTGGAGAGCCCGGAAGACCGTCATGTGTATCACCAGAGAAGAAA
AAGCATCTGCGAACCGGGGCAAAAGAACAGGAGTCACCCAAGAGGGGAGA
AGTGGCAATCACCGAGGGCGAGGCCTCAGACGGGGGCCCCGTGGCGGCGG
TGATGGACATACTGTAAACTACAGTACACTGACAATCCGCGGCAGAGTCA
GGGACCACCGAGAGCGAGGCCTCAAACGGGGGCCCCATGGCGGCGGCAAC
GGAAGATCCTCTAAACCACACTGAACTCTCTACAACGGCACAGGCCTTCG
ATGTCCGGGTCGCCCCCGTTGGCCAGGAGCTTGGTGAGCTCATGGGGTAT
CTCCTCCCGGAGATGGGCTTGCTGCCCCGGGCCCGGTGCGGATCCGGGGC
CCTGGGGACAGGTTCGAGGACGCCGACGAGGTCACTTCCGCCCGCCGCTC
CACTCCGACGAGGAAGAGGAGGAGCAGCCGGCGCCTGGGGCGGACAGGGG
CAAGGAACGCGGGGCGGCCGGTTCGCGTCCCGGGTGCGCAGGGTCTGTGT
TGGGATAGAGCGGGCCCGAGGGGTCACGAAACGGTTCCAGATTGCTGTGT
AGGAAGAAACGAAGCGAGTGGAAAACAGAGGTGATCCTACTTTCGCGATT
TTTATTCCGAAGGAATTGCACCCGG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:1138826..1139550+

>mRNA_S-ischiensis_contig9.20530.1 ID=mRNA_S-ischiensis_contig9.20530.1|Name=mRNA_S-ischiensis_contig9.20530.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=732bp|location=Sequence derived from alignment at S-ischiensis_contig9:1138826..1139550+ (Schizocladia ischiensis KU_0333)
ATGGCGGCGGCAACGGAAGATCCTCTAAACCACACTGAACTCTCTACAAC
GGCACAGGCCTTCGATGTCCGGGTCGCCCCCGTTGGCCAGGAGCTTGGTG
AGCTCATGGGGTATCTCCTCCCGGAGATGGGCTTGCTGCCCCGGGCCCGG
TGCGGATCCGGGGCCCTGGGGACAGGTTCGAGGACGCCGACGAGGTCACT
TCCGCCCGCCGCTCCACTCCGACGAGGAAGAGGAGGAGCAGCCGGCGCCT
GGGGCGGACAGGGGCAAGGAACGCGGGGCGGCCGGTTCGCGTCCCGGGTG
CGCAGGGTCTGTGTTGGGATAGAGCGGGCCCGAGGGGTCACGAAACGGTT
CCAGATTGCTGTGTAGATGGCGGCGGCAACGGAAGATCCTCTAAACCACA
CTGAACTCTCTACAACGGCACAGGCCTTCGATGTCCGGGTCGCCCCCGTT
GGCCAGGAGCTTGGTGAGCTCATGGGGTATCTCCTCCCGGAGATGGGCTT
GCTGCCCCGGGCCCGGTGCGGATCCGGGGCCCTGGGGACAGGTTCGAGGA
CGCCGACGAGGTCACTTCCGCCCGCCGCTCCACTCCGACGAGGAAGAGGA
GGAGCAGCCGGCGCCTGGGGCGGACAGGGGCAAGGAACGCGGGGCGGCCG
GTTCGCGTCCCGGGTGCGCAGGGTCTGTGTTGGGATAGAGCGGGCCCGAG
GGGTCACGAAACGGTTCCAGATTGCTGTGTAG
back to top