mRNA_S-ischiensis_contig9.20519.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20519.1
Unique NamemRNA_S-ischiensis_contig9.20519.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1008287..1008866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size582
Cds size504
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.4791212-CDS-S-ischiensis_contig9:1008286..10087901622817371.4791212-CDS-S-ischiensis_contig9:1008286..1008790Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1008287..1008790 +
1695741063.3098516-CDS-S-ischiensis_contig9:1008286..10087901695741063.3098516-CDS-S-ischiensis_contig9:1008286..1008790Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1008287..1008790 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.4945385-UTR-S-ischiensis_contig9:1008790..10088661622817371.4945385-UTR-S-ischiensis_contig9:1008790..1008866Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1008791..1008866 +
1695741063.320214-UTR-S-ischiensis_contig9:1008790..10088661695741063.320214-UTR-S-ischiensis_contig9:1008790..1008866Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 1008791..1008866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20519.1prot_S-ischiensis_contig9.20519.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1008287..1008790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20519.1

>prot_S-ischiensis_contig9.20519.1 ID=prot_S-ischiensis_contig9.20519.1|Name=mRNA_S-ischiensis_contig9.20519.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=168bp
LNTQTVLQRCHRHFQSNPDHIGIDQWAGTRGTPDRGRAGPRLNIRLPSCV
ATQGHVTSRRRRRRHTRLLQKPARKPLCAAVQKQPLDGTIVLLSIRYSRP
PPPQRQPGAEPHWPPRGRAQALGHCNGTVTFILPWKGFVHILPSTSCLDA
CMRCAPWLTVSSKTRDP*
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mRNA from alignment at S-ischiensis_contig9:1008287..1008866+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20519.1 ID=mRNA_S-ischiensis_contig9.20519.1|Name=mRNA_S-ischiensis_contig9.20519.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=580bp|location=Sequence derived from alignment at S-ischiensis_contig9:1008287..1008866+ (Schizocladia ischiensis KU_0333)
CTAAACACACAAACGGTCCTGCAGCGCTGCCACCGTCATTTTCAGTCGAA
TCCAGATCACATCGGGATTGATCAATGGGCTGGCACGCGAGGCACCCCTG
ACCGAGGCCGGGCCGGGCCCAGGCTCAATATACGCCTGCCCAGCTGCGTG
GCAACCCAGGGCCACGTGACCTCCAGGCGCCGCCGCCGCCGCCACACCAG
ACTCTTGCAAAAGCCAGCACGGAAACCTCTTTGTGCGGCCGTGCAGAAAC
AGCCCCTTGATGGTACAATAGTACTTCTAAGTATCCGCTACAGCAGGCCA
CCGCCCCCACAGCGCCAACCCGGAGCGGAGCCCCACTGGCCCCCCCGGGG
GCGGGCTCAGGCTCTTGGCCACTGCAATGGCACTGTCACTTTCATCCTCC
CGTGGAAGGGATTCGTGCACATACTTCCAAGTACCTCATGCCTTGACGCA
TGTATGCGCTGCGCCCCGTGGCTCACGGTGTCATCGAAAACCAGAGACCC
CTAACTAGGGGAGACCCCCCCTAGGGGAGACCCCAACTTACACGACATGG
GTACCAACAGCTTCAGGGGAGAGTCCGCAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:1008287..1008866+

>mRNA_S-ischiensis_contig9.20519.1 ID=mRNA_S-ischiensis_contig9.20519.1|Name=mRNA_S-ischiensis_contig9.20519.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1008bp|location=Sequence derived from alignment at S-ischiensis_contig9:1008287..1008866+ (Schizocladia ischiensis KU_0333)
CTAAACACACAAACGGTCCTGCAGCGCTGCCACCGTCATTTTCAGTCGAA
TCCAGATCACATCGGGATTGATCAATGGGCTGGCACGCGAGGCACCCCTG
ACCGAGGCCGGGCCGGGCCCAGGCTCAATATACGCCTGCCCAGCTGCGTG
GCAACCCAGGGCCACGTGACCTCCAGGCGCCGCCGCCGCCGCCACACCAG
ACTCTTGCAAAAGCCAGCACGGAAACCTCTTTGTGCGGCCGTGCAGAAAC
AGCCCCTTGATGGTACAATAGTACTTCTAAGTATCCGCTACAGCAGGCCA
CCGCCCCCACAGCGCCAACCCGGAGCGGAGCCCCACTGGCCCCCCCGGGG
GCGGGCTCAGGCTCTTGGCCACTGCAATGGCACTGTCACTTTCATCCTCC
CGTGGAAGGGATTCGTGCACATACTTCCAAGTACCTCATGCCTTGACGCA
TGTATGCGCTGCGCCCCGTGGCTCACGGTGTCATCGAAAACCAGAGACCC
CTAACTAAACACACAAACGGTCCTGCAGCGCTGCCACCGTCATTTTCAGT
CGAATCCAGATCACATCGGGATTGATCAATGGGCTGGCACGCGAGGCACC
CCTGACCGAGGCCGGGCCGGGCCCAGGCTCAATATACGCCTGCCCAGCTG
CGTGGCAACCCAGGGCCACGTGACCTCCAGGCGCCGCCGCCGCCGCCACA
CCAGACTCTTGCAAAAGCCAGCACGGAAACCTCTTTGTGCGGCCGTGCAG
AAACAGCCCCTTGATGGTACAATAGTACTTCTAAGTATCCGCTACAGCAG
GCCACCGCCCCCACAGCGCCAACCCGGAGCGGAGCCCCACTGGCCCCCCC
GGGGGCGGGCTCAGGCTCTTGGCCACTGCAATGGCACTGTCACTTTCATC
CTCCCGTGGAAGGGATTCGTGCACATACTTCCAAGTACCTCATGCCTTGA
CGCATGTATGCGCTGCGCCCCGTGGCTCACGGTGTCATCGAAAACCAGAG
ACCCCTAA
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