mRNA_S-ischiensis_contig9.20518.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20518.1
Unique NamemRNA_S-ischiensis_contig9.20518.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:1005212..1005583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size372
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.4362416-CDS-S-ischiensis_contig9:1005211..10055831622817371.4362416-CDS-S-ischiensis_contig9:1005211..1005583Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1005212..1005583 +
1695741063.2949293-CDS-S-ischiensis_contig9:1005211..10055831695741063.2949293-CDS-S-ischiensis_contig9:1005211..1005583Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 1005212..1005583 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20518.1prot_S-ischiensis_contig9.20518.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 1005212..1005583 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20518.1

>prot_S-ischiensis_contig9.20518.1 ID=prot_S-ischiensis_contig9.20518.1|Name=mRNA_S-ischiensis_contig9.20518.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=124bp
GHKQVRRLVGKLRQFAVCVWPSRHYSTVPASAHQHHGGPGRGPGRSGPAQ
GGPRPSCRVDGLVGMGGGGTGDLGVSMGAVHPPPADPRHRGRRGQALRGE
PAGPTRVGTQGWHLTPKWCHLGP*
back to top

mRNA from alignment at S-ischiensis_contig9:1005212..1005583+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20518.1 ID=mRNA_S-ischiensis_contig9.20518.1|Name=mRNA_S-ischiensis_contig9.20518.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=372bp|location=Sequence derived from alignment at S-ischiensis_contig9:1005212..1005583+ (Schizocladia ischiensis KU_0333)
GGGCACAAACAGGTGCGGCGCCTCGTCGGCAAGCTGCGCCAGTTCGCGGT
GTGTGTGTGGCCCAGCCGCCACTACAGTACAGTACCTGCGTCAGCTCATC
AACATCACGGTGGTCCGGGCAGAGGGCCGGGGCGCAGTGGCCCTGCCCAA
GGCGGCCCGCGGCCATCTTGCCGTGTGGACGGCCTTGTGGGCATGGGGGG
AGGAGGAACCGGCGATCTTGGAGTGTCCATGGGAGCTGTACATCCGCCGC
CCGCCGACCCTCGTCATCGAGGGCGACGTGGCCAAGCATTGAGGGGGGAG
CCTGCTGGCCCAACGCGGGTCGGTACGCAGGGTTGGCATTTGACCCCTAA
GTGGTGCCATTTAGGCCCTTAA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig9:1005212..1005583+

>mRNA_S-ischiensis_contig9.20518.1 ID=mRNA_S-ischiensis_contig9.20518.1|Name=mRNA_S-ischiensis_contig9.20518.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=744bp|location=Sequence derived from alignment at S-ischiensis_contig9:1005212..1005583+ (Schizocladia ischiensis KU_0333)
GGGCACAAACAGGTGCGGCGCCTCGTCGGCAAGCTGCGCCAGTTCGCGGT
GTGTGTGTGGCCCAGCCGCCACTACAGTACAGTACCTGCGTCAGCTCATC
AACATCACGGTGGTCCGGGCAGAGGGCCGGGGCGCAGTGGCCCTGCCCAA
GGCGGCCCGCGGCCATCTTGCCGTGTGGACGGCCTTGTGGGCATGGGGGG
AGGAGGAACCGGCGATCTTGGAGTGTCCATGGGAGCTGTACATCCGCCGC
CCGCCGACCCTCGTCATCGAGGGCGACGTGGCCAAGCATTGAGGGGGGAG
CCTGCTGGCCCAACGCGGGTCGGTACGCAGGGTTGGCATTTGACCCCTAA
GTGGTGCCATTTAGGCCCTTAAGGGCACAAACAGGTGCGGCGCCTCGTCG
GCAAGCTGCGCCAGTTCGCGGTGTGTGTGTGGCCCAGCCGCCACTACAGT
ACAGTACCTGCGTCAGCTCATCAACATCACGGTGGTCCGGGCAGAGGGCC
GGGGCGCAGTGGCCCTGCCCAAGGCGGCCCGCGGCCATCTTGCCGTGTGG
ACGGCCTTGTGGGCATGGGGGGAGGAGGAACCGGCGATCTTGGAGTGTCC
ATGGGAGCTGTACATCCGCCGCCCGCCGACCCTCGTCATCGAGGGCGACG
TGGCCAAGCATTGAGGGGGGAGCCTGCTGGCCCAACGCGGGTCGGTACGC
AGGGTTGGCATTTGACCCCTAAGTGGTGCCATTTAGGCCCTTAA
back to top