mRNA_S-ischiensis_contig9.20514.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20514.1
Unique NamemRNA_S-ischiensis_contig9.20514.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20514.1 vs. uniprot
Match: UPI001376ECC3 (HNH endonuclease n=1 Tax=Proteus sp. G2666 TaxID=2698879 RepID=UPI001376ECC3)

HSP 1 Score: 58.5 bits (140), Expect = 1.340e-6
Identity = 44/127 (34.65%), Postives = 66/127 (51.97%), Query Frame = 3 
Query:  696 WVVWSADGRQRNQSVHRLVFRKWKGNFPANESAANGKEAERLVLHHRDGNKANNSGCNLEFVSHVANCRKREGRASNNTSGANGVHRRKDKGKWQACIPVDSKRKHLGYFVDKSDAKNARLAAEKQY 1076
            W V  +D R  N   HR+++  + G+ P       G E +  + H +D N+  N    L  V+H+ N + R     NN SG NGV + K+  +W+A I V+ K+ HLG F+ K  A  AR +A+ QY
Sbjct:   55 WQVGLSDHRLLN---HRVIWMMFYGDIPQ------GYEIDH-INHVKDDNRIEN----LRLVTHMENGKNRS-TGRNNKSGFNGVLKNKEGTRWRAFISVNRKKIHLGSFLTKQAAIQARKSAKIQY 166
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BLAST of mRNA_S-ischiensis_contig9.20514.1 vs. uniprot
Match: A0A3G3LKM7_9CAUD (DNA endonuclease I-HmuI n=11 Tax=root TaxID=1 RepID=A0A3G3LKM7_9CAUD)

HSP 1 Score: 55.5 bits (132), Expect = 1.940e-5
Identity = 39/126 (30.95%), Postives = 62/126 (49.21%), Query Frame = 2 
Query:  131 EVWKAVPHRFLPRDAPKPEQRVLYEVSNLGQVRSVREV-------RGKPTTRLLTGSINTQHKYCQYGMAYGGRSKTRVAHELVLGTFEGPYPGPKSLWHIDHKDRNKHNNALTNLHYVKAKHNLS 487
            EVWK +            + + LY+VSNLG+VRS+  V       +GK     L G+      Y Q G+   G+ + ++ H LV   F    P P +L  ++HKD +K NN ++NL +    +N++
Sbjct:   18 EVWKDI-----------EDYKGLYQVSNLGRVRSLDRVDMRGNHLKGKALAYNLAGA-----GYLQVGLHRDGKVEQKLVHRLVSEAF---LPNPDNLPEVNHKDEDKTNNNVSNLEWCTRLYNMT 124
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BLAST of mRNA_S-ischiensis_contig9.20514.1 vs. uniprot
Match: UPI00032E70F6 (NUMOD4 motif-containing HNH endonuclease n=1 Tax=Enterococcus faecium TaxID=1352 RepID=UPI00032E70F6)

HSP 1 Score: 55.1 bits (131), Expect = 2.180e-5
Identity = 35/101 (34.65%), Postives = 49/101 (48.51%), Query Frame = 2 
Query:  197 LYEVSNLGQVRSVREV------RGKPTTRLLTGSINTQHKYCQYGMAYGGRSKTRVAHELVLGTFEGPYPGPKSLWHIDHKDRNKHNNALTNLHYVKAKHN 481
            LY+VSNLG+V+S+  V      R  P    +      ++ YCQ  +   G+ K    H LV   F G  P     + ++H D NK NNA+ NL Y+  K N
Sbjct:   14 LYQVSNLGRVKSLERVTIRKDGRKLPCRERILKLQTDRNSYCQIQLCKDGKIKNYRIHVLVAKHFIGERP---ESYQVNHIDENKANNAVFNLEYLTPKEN 111
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BLAST of mRNA_S-ischiensis_contig9.20514.1 vs. uniprot
Match: UPI0009E6DF20 (NUMOD4 domain-containing protein n=1 Tax=Lacticaseibacillus pantheris TaxID=171523 RepID=UPI0009E6DF20)

HSP 1 Score: 55.1 bits (131), Expect = 2.820e-5
Identity = 39/118 (33.05%), Postives = 58/118 (49.15%), Query Frame = 2 
Query:  197 LYEVSNLGQVRSVR--EVRGKPTTRLLTGSINTQHKYCQYGMAYGGRSKTRVAHELVLGTFEGPYPGPKSLWHIDHKDRNKHNNALTNLHYVKAKHNLS-------RSRKPRVRKGRL 523
            +YEVSNLG+VRSV   +  G     ++      +  Y +  ++ G RS+    H LV  TF    P P  L  ++HKD    NN +TNL +   ++N++       RS  PR +K  L
Sbjct:   14 IYEVSNLGRVRSVDRFDTNGHHLRSVVLKPHYNKKGYARVSLSVGNRSRYMQIHRLVALTF---IPNPLDLPVVNHKDECPSNNNVTNLEWCNTEYNVNYGTGLQRRSNNPRWQKATL 128
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BLAST of mRNA_S-ischiensis_contig9.20514.1 vs. uniprot
Match: UPI0007DB2D6C (NUMOD4 motif-containing HNH endonuclease n=3 Tax=Lacticaseibacillus rhamnosus TaxID=47715 RepID=UPI0007DB2D6C)

HSP 1 Score: 54.3 bits (129), Expect = 3.940e-5
Identity = 39/124 (31.45%), Postives = 60/124 (48.39%), Query Frame = 2 
Query:  131 EVWKAVPHRFLPRDAPKPEQRVLYEVSNLGQVRSVREV-------RGKPTTRLLTGSINTQHKYCQYGMAYGGRSKTRVAHELVLGTFEGPYPGPKSLWHIDHKDRNKHNNALTNLHYVKAKHN 481
            EVWK +            + + LY+VSNLG+VRS+  +       +GK     L+G       Y Q G+   G+ + ++ H LV   F    P P +L  ++HKD +K NN + NL +  A +N
Sbjct:    5 EVWKDI-----------EDYKGLYQVSNLGRVRSLDRIDALGRLRKGKVLAYGLSGG-----GYLQVGLHRDGKVEQKLVHRLVSEAF---LPNPDNLPQVNHKDEDKANNQVENLEWCTALYN 109
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BLAST of mRNA_S-ischiensis_contig9.20514.1 vs. uniprot
Match: UPI00124AE68E (NUMOD4 domain-containing protein n=1 Tax=Lacticaseibacillus paracasei TaxID=1597 RepID=UPI00124AE68E)

HSP 1 Score: 54.3 bits (129), Expect = 4.070e-5
Identity = 37/103 (35.92%), Postives = 50/103 (48.54%), Query Frame = 2 
Query:  197 LYEVSNLGQVRSVREV-------RGKPTTRLLTGSINTQHKYCQYGMAYGGRSKTRVAHELVLGTFEGPYPGPKSLWHIDHKDRNKHNNALTNLHYVKAKHNL 484
            LY+VSN+G+VRSV          +GK      +GS      Y Q  +   G  K ++ H LV   F      P SL  ++HKD NK NN + NL Y  A +N+
Sbjct:   18 LYQVSNMGRVRSVDRKDSQGHFWKGKVLIGWPSGS-----GYLQAALWRDGHGKNKLIHRLVAEAF---ISNPHSLPQVNHKDENKTNNRVDNLEYCSAHYNI 112
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BLAST of mRNA_S-ischiensis_contig9.20514.1 vs. uniprot
Match: UPI00178CA0A8 (NUMOD4 motif-containing HNH endonuclease n=1 Tax=Acinetobacter oleivorans TaxID=1148157 RepID=UPI00178CA0A8)

HSP 1 Score: 53.9 bits (128), Expect = 5.010e-5
Identity = 43/123 (34.96%), Postives = 59/123 (47.97%), Query Frame = 2 
Query:  131 EVWKAVPHRFLPRDAPKPEQRVLYEVSNLGQVRSVREVR----GKPTTRL--LTGSINTQHKYCQYGMAYGGRSKTRVAHELVLGTFEGPYPGPKSLWHIDHKDRNKHNNALTNLHYVKAKHN 481
            E+WK +           PE   LY+VSNLG+VRS  +      GKP  R   +        +Y    +A G + K  + H+LV+  F GP P  K ++ + H D N+ NN L NL Y  AK N
Sbjct:    2 EIWKDI-----------PEWENLYQVSNLGRVRSFDKQCPARFGKPVLRKGRVLKPTAKGGRYLAVTLADGSKRKQCLIHDLVMLAFIGPKP--KGMY-VCHGDDNRINNCLENLRYGTAKEN 110
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BLAST of mRNA_S-ischiensis_contig9.20514.1 vs. uniprot
Match: UPI001EDAE550 (NUMOD4 domain-containing protein n=1 Tax=Flavobacterium sp. SM15 TaxID=2908005 RepID=UPI001EDAE550)

HSP 1 Score: 53.5 bits (127), Expect = 5.350e-5
Identity = 33/100 (33.00%), Postives = 50/100 (50.00%), Query Frame = 2 
Query:  197 LYEVSNLGQVRSVREVRGKPTTRLLTGSINTQHKYCQYGMAYGGRSKTRVAHELVLGTFEGPYPGPKSLWHIDHKDRNKHNNALTNLHYVKAKHNLSRSR 496
            LYE+SNLG V+S+R  + K     +  + +    Y   G+   G SK    H+LV  TF      PK    +DH + +K +N L NL  +  + N+S+ R
Sbjct:   14 LYEISNLGNVKSIRFNKEK-----ILKANDDSRGYLYVGLHNNGVSKYVKIHKLVFNTFNNILESPKGFV-VDHINSDKSDNTLINLRLISIRDNISKER 107
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BLAST of mRNA_S-ischiensis_contig9.20514.1 vs. uniprot
Match: A0A853J625_LACRH (HNH endonuclease n=3 Tax=Lacticaseibacillus TaxID=2759736 RepID=A0A853J625_LACRH)

HSP 1 Score: 53.5 bits (127), Expect = 7.830e-5
Identity = 31/97 (31.96%), Postives = 49/97 (50.52%), Query Frame = 2 
Query:  197 LYEVSNLGQVRSVREV--RGKPTTRLLTGSINTQHKYCQYGMAYGGRSKTRVAHELVLGTFEGPYPGPKSLWHIDHKDRNKHNNALTNLHYVKAKHN 481
            LY+VSNLG+VRS+  +   G     ++      +  Y    +   G  K ++ H +V  TF    P P +L  ++HKD +K NN + NL +  A +N
Sbjct:   18 LYQVSNLGRVRSLERIDASGHHRKGIMLAGRTVRGGYLNVRLYRYGSEKNKLVHRIVAETF---IPNPDNLPQVNHKDEDKTNNQVENLEWCTALYN 111
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI001376ECC31.340e-634.65HNH endonuclease n=1 Tax=Proteus sp. G2666 TaxID=2... [more]
A0A3G3LKM7_9CAUD1.940e-530.95DNA endonuclease I-HmuI n=11 Tax=root TaxID=1 RepI... [more]
UPI00032E70F62.180e-534.65NUMOD4 motif-containing HNH endonuclease n=1 Tax=E... [more]
UPI0009E6DF202.820e-533.05NUMOD4 domain-containing protein n=1 Tax=Lacticase... [more]
UPI0007DB2D6C3.940e-531.45NUMOD4 motif-containing HNH endonuclease n=3 Tax=L... [more]
UPI00124AE68E4.070e-535.92NUMOD4 domain-containing protein n=1 Tax=Lacticase... [more]
UPI00178CA0A85.010e-534.96NUMOD4 motif-containing HNH endonuclease n=1 Tax=A... [more]
UPI001EDAE5505.350e-533.00NUMOD4 domain-containing protein n=1 Tax=Flavobact... [more]
A0A853J625_LACRH7.830e-531.96HNH endonuclease n=3 Tax=Lacticaseibacillus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:974945..976455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1139
Cds size612
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20514.1prot_S-ischiensis_contig9.20514.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 975258..976241 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817365.1019163-UTR-S-ischiensis_contig9:974944..9752571622817365.1019163-UTR-S-ischiensis_contig9:974944..975257Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 974945..975257 +
1695741059.3873396-UTR-S-ischiensis_contig9:974944..9752571695741059.3873396-UTR-S-ischiensis_contig9:974944..975257Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 974945..975257 +
1622817365.147896-UTR-S-ischiensis_contig9:976241..9764551622817365.147896-UTR-S-ischiensis_contig9:976241..976455Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 976242..976455 +
1695741059.4214172-UTR-S-ischiensis_contig9:976241..9764551695741059.4214172-UTR-S-ischiensis_contig9:976241..976455Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 976242..976455 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817365.1145787-CDS-S-ischiensis_contig9:975257..9753411622817365.1145787-CDS-S-ischiensis_contig9:975257..975341Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 975258..975341 +
1695741059.396078-CDS-S-ischiensis_contig9:975257..9753411695741059.396078-CDS-S-ischiensis_contig9:975257..975341Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 975258..975341 +
1622817365.1262648-CDS-S-ischiensis_contig9:975518..9757141622817365.1262648-CDS-S-ischiensis_contig9:975518..975714Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 975519..975714 +
1695741059.404561-CDS-S-ischiensis_contig9:975518..9757141695741059.404561-CDS-S-ischiensis_contig9:975518..975714Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 975519..975714 +
1622817365.1372206-CDS-S-ischiensis_contig9:975909..9762411622817365.1372206-CDS-S-ischiensis_contig9:975909..976241Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 975910..976241 +
1695741059.4130242-CDS-S-ischiensis_contig9:975909..9762411695741059.4130242-CDS-S-ischiensis_contig9:975909..976241Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 975910..976241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20514.1

>prot_S-ischiensis_contig9.20514.1 ID=prot_S-ischiensis_contig9.20514.1|Name=mRNA_S-ischiensis_contig9.20514.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=204bp
MAYGGRSKTRVAHELVLGTFEGPYPGPKSLWHIDHKDRNKHNNALTNLHY
VKAKHNLSRSRKPRVRKGRLDVRGAGAPGPAELAAAPDTAGSRGGQGGPR
AVCGGVSARQEEEAGHPDTLRQEVRAPLGRVVCRWAAAQPVRAPPGVQEV
EGELPGQRVGRQREGGGAAGPPPQGRQQGQQQRLQPGVRLPRGELPQARG
PCQ*
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mRNA from alignment at S-ischiensis_contig9:974945..976455+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20514.1 ID=mRNA_S-ischiensis_contig9.20514.1|Name=mRNA_S-ischiensis_contig9.20514.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1511bp|location=Sequence derived from alignment at S-ischiensis_contig9:974945..976455+ (Schizocladia ischiensis KU_0333)
GGAGGACGACACTGGCTCCGACGAGGACGTTGGTGACTCCTCCGATGAGG
AGTCGTCCTCTGACGAGGGGGAGCAGGAGGATGAGTCCGACGACGACAAC
GAGGAGGTGGACGTTGCGGACTTGGATGATGAGGTGTGGAAGGCTGTGCC
GCACCGGTTCCTGCCCCGAGATGCCCCGAAGCCGGAGCAGCGGGTCCTGT
ACGAGGTTTCAAACCTCGGCCAAGTCCGCTCGGTCCGCGAGGTGCGGGGC
AAGCCCACGACGCGGCTGCTGACGGGGTCCATCAACACCCAGCACAAGTA
CTGCCAGTACGGCATGGCCTATGGAGGCCGCAGCAAGACGAGGGTCGCCC
ATGAGCTGGTGCTCGGCACCTTCGAGGGGCCCTACCCGGGTCCGAAGGTG
CACAACACTCCGACCGCACTCCTGACCGGGGCATTGCCTGTCTCCTGTGC
GTTTGAATTGCAGTCAATGTTGCCTTCTGCCCGCGCTTGCTGTGCATGCC
CCGGTCTCTACACCCCTTGCCTTTCCCACAGCTTCTGACTCTCACAATCT
GCTCGTTGCTTTCTCTTTGAACAGAGCCTGTGGCACATTGACCACAAGGA
TCGCAACAAGCACAACAACGCCTTGACCAACCTCCACTACGTCAAGGCCA
AGCACAACCTGAGCCGCAGCCGCAAGCCCCGCGTGAGGAAGGGTCGCTTG
GACGTACGTGGAGCCGGAGCGCCCGGACCTGCTGAACTGGCGGCAGCACC
AGACACTGCCGGATCTCGAGGTGAGCATTGTGCCCGCATGGGGTGGTTCT
ATGGCCCGCTCGATTTTGGTGGGGCACCTGGTGTGGGATCATGGCTGTGT
TGAGTTTGCAAGGAGTGCCACCCAAAGTGCCTGCTGCCGGCTGCATCCGT
GTGCCGCACCCTGACTCCCCCCCTGCCCCATCCCGACGCTGGCCCCGTCG
CTGGTTTCCCCGCAGGTGGCCAGGGAGGGCCACGTGCGGTATGCGGCGGA
GTAAGTGCCCGCCAAGAGGAGGAAGCAGGCCATCCTGACACCCTACGCCA
AGAAGTCAGGGCACCTCTGGGTCGTGTGGTCTGCCGATGGGCGGCAGCGC
AACCAGTCCGTGCACCGCCTGGTGTTCAGGAAGTGGAAGGGGAACTTCCC
GGCCAACGAGTCGGCCGCCAACGGGAAGGAGGCGGAGCGGCTGGTCCTCC
ACCACAGGGACGGCAACAAGGCCAACAACAGCGGCTGCAACCTGGAGTTC
GTCTCCCACGTGGCGAACTGCCGCAAGCGCGAGGGCCGTGCCAGTAACAA
CACCAGCGGGGCCAACGGCGTGCACCGGCGCAAGGACAAGGGCAAGTGGC
AGGCCTGCATCCCTGTAGACAGCAAGCGCAAGCACCTGGGCTACTTTGTG
GACAAGAGCGACGCCAAGAATGCCCGCCTCGCTGCGGAGAAACAGTACTG
GGAGTAGTCGGGTGGCGATTGGTAGGGCGTGTTCGTAGGTTGGGCGGGTA
GAGCATGGGTT
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:974945..976455+

>mRNA_S-ischiensis_contig9.20514.1 ID=mRNA_S-ischiensis_contig9.20514.1|Name=mRNA_S-ischiensis_contig9.20514.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1224bp|location=Sequence derived from alignment at S-ischiensis_contig9:974945..976455+ (Schizocladia ischiensis KU_0333)
ATGGCCTATGGAGGCCGCAGCAAGACGAGGGTCGCCCATGAGCTGGTGCT
CGGCACCTTCGAGGGGCCCTACCCGGGTCCGAAGATGGCCTATGGAGGCC
GCAGCAAGACGAGGGTCGCCCATGAGCTGGTGCTCGGCACCTTCGAGGGG
CCCTACCCGGGTCCGAAGAGCCTGTGGCACATTGACCACAAGGATCGCAA
CAAGCACAACAACGCCTTGACCAACCTCCACTACGTCAAGGCCAAGCACA
ACCTGAGCCGCAGCCGCAAGCCCCGCGTGAGGAAGGGTCGCTTGGACGTA
CGTGGAGCCGGAGCGCCCGGACCTGCTGAACTGGCGGCAGCACCAGACAC
TGCCGGATCTCGAGAGCCTGTGGCACATTGACCACAAGGATCGCAACAAG
CACAACAACGCCTTGACCAACCTCCACTACGTCAAGGCCAAGCACAACCT
GAGCCGCAGCCGCAAGCCCCGCGTGAGGAAGGGTCGCTTGGACGTACGTG
GAGCCGGAGCGCCCGGACCTGCTGAACTGGCGGCAGCACCAGACACTGCC
GGATCTCGAGGTGGCCAGGGAGGGCCACGTGCGGTATGCGGCGGAGTAAG
TGCCCGCCAAGAGGAGGAAGCAGGCCATCCTGACACCCTACGCCAAGAAG
TCAGGGCACCTCTGGGTCGTGTGGTCTGCCGATGGGCGGCAGCGCAACCA
GTCCGTGCACCGCCTGGTGTTCAGGAAGTGGAAGGGGAACTTCCCGGCCA
ACGAGTCGGCCGCCAACGGGAAGGAGGCGGAGCGGCTGGTCCTCCACCAC
AGGGACGGCAACAAGGCCAACAACAGCGGCTGCAACCTGGAGTTCGTCTC
CCACGTGGCGAACTGCCGCAAGCGCGAGGGCCGTGCCAGTAAGTGGCCAG
GGAGGGCCACGTGCGGTATGCGGCGGAGTAAGTGCCCGCCAAGAGGAGGA
AGCAGGCCATCCTGACACCCTACGCCAAGAAGTCAGGGCACCTCTGGGTC
GTGTGGTCTGCCGATGGGCGGCAGCGCAACCAGTCCGTGCACCGCCTGGT
GTTCAGGAAGTGGAAGGGGAACTTCCCGGCCAACGAGTCGGCCGCCAACG
GGAAGGAGGCGGAGCGGCTGGTCCTCCACCACAGGGACGGCAACAAGGCC
AACAACAGCGGCTGCAACCTGGAGTTCGTCTCCCACGTGGCGAACTGCCG
CAAGCGCGAGGGCCGTGCCAGTAA
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