mRNA_S-ischiensis_contig9.20509.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20509.1
Unique NamemRNA_S-ischiensis_contig9.20509.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:923549..925244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons4
Model size966
Cds size966
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20509.1prot_S-ischiensis_contig9.20509.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 923549..925244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817364.9290218-CDS-S-ischiensis_contig9:923548..9240171622817364.9290218-CDS-S-ischiensis_contig9:923548..924017Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 923549..924017 +
1695741059.2910483-CDS-S-ischiensis_contig9:923548..9240171695741059.2910483-CDS-S-ischiensis_contig9:923548..924017Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 923549..924017 +
1622817364.940746-CDS-S-ischiensis_contig9:924306..9243811622817364.940746-CDS-S-ischiensis_contig9:924306..924381Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 924307..924381 +
1695741059.3004615-CDS-S-ischiensis_contig9:924306..9243811695741059.3004615-CDS-S-ischiensis_contig9:924306..924381Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 924307..924381 +
1622817364.9518042-CDS-S-ischiensis_contig9:924625..9246721622817364.9518042-CDS-S-ischiensis_contig9:924625..924672Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 924626..924672 +
1695741059.309882-CDS-S-ischiensis_contig9:924625..9246721695741059.309882-CDS-S-ischiensis_contig9:924625..924672Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 924626..924672 +
1622817364.9644263-CDS-S-ischiensis_contig9:924869..9252441622817364.9644263-CDS-S-ischiensis_contig9:924869..925244Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 924870..925244 +
1695741059.3191702-CDS-S-ischiensis_contig9:924869..9252441695741059.3191702-CDS-S-ischiensis_contig9:924869..925244Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 924870..925244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20509.1

>prot_S-ischiensis_contig9.20509.1 ID=prot_S-ischiensis_contig9.20509.1|Name=mRNA_S-ischiensis_contig9.20509.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=322bp
FSLSSALRAFPAAGGRTRDRVSAGRPPTMTRASRVALLSLLSLVAATNAA
EATVDASGELSDQGRGLRASVIDGVQKLTGIGRGLDEKEDKKAARKAAKR
AAKKGHKDKKEDKYDEKKYEENKVDFLSVDYEKYYAQKWDWEKCTRKGGH
CWTEWDCCGDEKCHWTWPPLKHSGGICGGLPAECADPCVSSCYASCEAKL
IIDVDCKNKHPSQGCDITCMAQTFGYGAYGVTEDPENHINAMLSVDDGVK
DCAGLTETGPGKYGRGYRGYYGDEGKDGEGKDDKGKDHEGKDHEGKDKVY
DDEGRRLNSYGDDYWGGYDQYR
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mRNA from alignment at S-ischiensis_contig9:923549..925244+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20509.1 ID=mRNA_S-ischiensis_contig9.20509.1|Name=mRNA_S-ischiensis_contig9.20509.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1696bp|location=Sequence derived from alignment at S-ischiensis_contig9:923549..925244+ (Schizocladia ischiensis KU_0333)
TTCAGCCTGTCCTCAGCACTGCGTGCTTTCCCTGCAGCTGGGGGTCGCAC
ACGGGACCGCGTATCCGCTGGGAGGCCTCCCACAATGACTCGTGCGTCGC
GCGTGGCGCTTTTGTCGCTGCTTTCGCTGGTGGCAGCGACCAACGCGGCC
GAGGCTACCGTCGATGCCTCGGGCGAGCTGTCGGACCAGGGGAGGGGCCT
CCGCGCCTCCGTGATTGACGGCGTGCAGAAGCTGACGGGCATCGGCAGGG
GCCTGGACGAGAAGGAGGACAAGAAGGCCGCGCGGAAGGCCGCGAAGAGG
GCCGCGAAAAAGGGCCACAAGGACAAAAAGGAGGACAAGTACGACGAGAA
GAAGTACGAGGAGAATAAGGTCGACTTCTTGTCCGTGGACTACGAGAAGT
ACTACGCCCAAAAGTGGGACTGGGAGAAGTGCACGCGGAAGGGCGGCCAC
TGCTGGACCGAATGGGACTGTGAGTTGTGTAACCGACGCGGTCGGCCCTG
ATGCCCACCGGCCCACCGACGGCCGTAGCCCAGAGCGATTGCTTGCAGCG
AGAGCACCGGTACCGGGGCAGCCCACTAGCTCGTTCCCGTGTACAGACGC
ATGCCGTGCCTTCGTCGCGCCTGTGCCTCTCCTGCGTACGGTTGCCCTCC
AACCGCCGCGGTTGCCCTCCCCAGCCACGCACGACTGACTGTTCTTGATC
CCCTCACCTCCCCCGCTCCTCCCTCATTCTCACGGCGCCTGCACACTTCA
CTCTCCAGGCTGCGGCGATGAGAAGTGCCATTGGACCTGGCCTCCGCTCA
AGCACAGCGGTGGCATCTGCGGCGGTCTGCCGGGTGAGCTGCTTTGCACG
TACACGCGTGCGTTCACGTGCGCAAGTGATGGGGGCGCTCGCCTTGATTA
GCCGCTGCCCTTGCCCTTGGTGCTGAACGTGCTTGTCCATCCTTGGTTGT
GAGCCTTGACTGACGCCTGACGCCTGCACCTTTGTGTCGCCGGACGCCTG
CACCCTGTTCAACCGCTGTGGCTACGACAAAACTAACCCGACCCCGTTGA
CGGTGTCTCCCCCCGTGCCCCACGCAGCGGAGTGCGCGGACCCTTGCGTG
TCTTCTTGCTACGCCTCGTGCGAGGTGAGCTCCAGTTACTGTAGGTGTGG
CTTGTTGTCGGTTGACAGTAGGCTGGTTGTCGGTGGACAGCGACTTGTTC
CAAGTGCACACCCACTCCACAAGGTGTGCTGATACTGTTCCCCCCACCCT
GCCTGCGCTTCGCGCGCTCCCCCGGCTCCCCTGCCCTTGTTTTGCGCGCC
GTGCTTGCTCTCGCTCTGCAGGCCAAGCTCATCATCGACGTCGACTGCAA
GAACAAGCACCCGTCCCAGGGCTGCGACATTACGTGCATGGCGCAGACCT
TCGGCTATGGTGCCTACGGCGTGACAGAGGACCCCGAAAACCACATTAAC
GCCATGTTGTCCGTCGACGACGGCGTGAAGGACTGCGCCGGCCTCACAGA
AACCGGCCCCGGCAAGTACGGCAGAGGCTACAGGGGCTACTACGGCGACG
AGGGCAAGGACGGCGAGGGCAAGGACGACAAGGGCAAGGACCACGAGGGC
AAGGACCACGAGGGCAAGGACAAGGTCTATGACGACGAGGGCCGTAGGCT
TAACAGCTACGGCGACGACTACTGGGGCGGCTATGATCAGTACCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:923549..925244+

>mRNA_S-ischiensis_contig9.20509.1 ID=mRNA_S-ischiensis_contig9.20509.1|Name=mRNA_S-ischiensis_contig9.20509.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1932bp|location=Sequence derived from alignment at S-ischiensis_contig9:923549..925244+ (Schizocladia ischiensis KU_0333)
TTCAGCCTGTCCTCAGCACTGCGTGCTTTCCCTGCAGCTGGGGGTCGCAC
ACGGGACCGCGTATCCGCTGGGAGGCCTCCCACAATGACTCGTGCGTCGC
GCGTGGCGCTTTTGTCGCTGCTTTCGCTGGTGGCAGCGACCAACGCGGCC
GAGGCTACCGTCGATGCCTCGGGCGAGCTGTCGGACCAGGGGAGGGGCCT
CCGCGCCTCCGTGATTGACGGCGTGCAGAAGCTGACGGGCATCGGCAGGG
GCCTGGACGAGAAGGAGGACAAGAAGGCCGCGCGGAAGGCCGCGAAGAGG
GCCGCGAAAAAGGGCCACAAGGACAAAAAGGAGGACAAGTACGACGAGAA
GAAGTACGAGGAGAATAAGGTCGACTTCTTGTCCGTGGACTACGAGAAGT
ACTACGCCCAAAAGTGGGACTGGGAGAAGTGCACGCGGAAGGGCGGCCAC
TGCTGGACCGAATGGGACTTTCAGCCTGTCCTCAGCACTGCGTGCTTTCC
CTGCAGCTGGGGGTCGCACACGGGACCGCGTATCCGCTGGGAGGCCTCCC
ACAATGACTCGTGCGTCGCGCGTGGCGCTTTTGTCGCTGCTTTCGCTGGT
GGCAGCGACCAACGCGGCCGAGGCTACCGTCGATGCCTCGGGCGAGCTGT
CGGACCAGGGGAGGGGCCTCCGCGCCTCCGTGATTGACGGCGTGCAGAAG
CTGACGGGCATCGGCAGGGGCCTGGACGAGAAGGAGGACAAGAAGGCCGC
GCGGAAGGCCGCGAAGAGGGCCGCGAAAAAGGGCCACAAGGACAAAAAGG
AGGACAAGTACGACGAGAAGAAGTACGAGGAGAATAAGGTCGACTTCTTG
TCCGTGGACTACGAGAAGTACTACGCCCAAAAGTGGGACTGGGAGAAGTG
CACGCGGAAGGGCGGCCACTGCTGGACCGAATGGGACTGCTGCGGCGATG
AGAAGTGCCATTGGACCTGGCCTCCGCTCAAGCACAGCGGTGGCATCTGC
GGCGGTCTGCCGGGCTGCGGCGATGAGAAGTGCCATTGGACCTGGCCTCC
GCTCAAGCACAGCGGTGGCATCTGCGGCGGTCTGCCGGCGGAGTGCGCGG
ACCCTTGCGTGTCTTCTTGCTACGCCTCGTGCGAGCGGAGTGCGCGGACC
CTTGCGTGTCTTCTTGCTACGCCTCGTGCGAGGCCAAGCTCATCATCGAC
GTCGACTGCAAGAACAAGCACCCGTCCCAGGGCTGCGACATTACGTGCAT
GGCGCAGACCTTCGGCTATGGTGCCTACGGCGTGACAGAGGACCCCGAAA
ACCACATTAACGCCATGTTGTCCGTCGACGACGGCGTGAAGGACTGCGCC
GGCCTCACAGAAACCGGCCCCGGCAAGTACGGCAGAGGCTACAGGGGCTA
CTACGGCGACGAGGGCAAGGACGGCGAGGGCAAGGACGACAAGGGCAAGG
ACCACGAGGGCAAGGACCACGAGGGCAAGGACAAGGTCTATGACGACGAG
GGCCGTAGGCTTAACAGCTACGGCGACGACTACTGGGGCGGCTATGATCA
GTACCGCGCCAAGCTCATCATCGACGTCGACTGCAAGAACAAGCACCCGT
CCCAGGGCTGCGACATTACGTGCATGGCGCAGACCTTCGGCTATGGTGCC
TACGGCGTGACAGAGGACCCCGAAAACCACATTAACGCCATGTTGTCCGT
CGACGACGGCGTGAAGGACTGCGCCGGCCTCACAGAAACCGGCCCCGGCA
AGTACGGCAGAGGCTACAGGGGCTACTACGGCGACGAGGGCAAGGACGGC
GAGGGCAAGGACGACAAGGGCAAGGACCACGAGGGCAAGGACCACGAGGG
CAAGGACAAGGTCTATGACGACGAGGGCCGTAGGCTTAACAGCTACGGCG
ACGACTACTGGGGCGGCTATGATCAGTACCGC
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