mRNA_S-ischiensis_contig9.20508.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20508.1
Unique NamemRNA_S-ischiensis_contig9.20508.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig9.20508.1 vs. uniprot
Match: A0A0A9W6P7_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9W6P7_LYGHE)

HSP 1 Score: 273 bits (698), Expect = 1.730e-77
Identity = 152/413 (36.80%), Postives = 237/413 (57.38%), Query Frame = 1
Query:    1 EPSTTREALAGPDADKWQEAMDKELQGLWNKGAFSDEPAPPDRKPVKTHYVYKIKHKADGSVERYKVRLVARGFTQQQRVDFFQTFSPVFGLDVMRSVLATAVRHGWAIHSLDFTQAYLNASLQEDIWLELPDGHIVKAN--------KVLYGLKQSALEWYKELRSKILGEGWSSSANDECLYYRRSEDGRVAVLLTYVDDTAFTGDYDEEIKRMRDTLLSTYEGRDLGIPDQLLGVWITTDETG-IILDQLLHTKSIVTEGMGSLDLQITTSPLDPGVDLSARRDD---KEELDCKLYPYANILGKLMFLAGMTRPDLASSVWELGHCAAPPCMRHWRGQQHVLRYLAGTLDVCIHYAANTDSDDERVLIGYSDSDWGNDIEMRRSVTGCILLYDGSPIAWRSKQQGAVAV 1203
            EP T ++A+ GPD   W+EA+++EL  L N   +     PP +  +   +V+KIK+ ADGSVERYK RLVA+GFTQ+  VD+ +T+SPV  L  +R  L  AV + W +H +D   AYLN  L+E+I++ LP+G I + +        K LYGLKQS   WY+ L  K+L  G   S ++ C+Y+ +S DG + ++L YVDD        E +  M+  L   +E +DLG  + +LG+ +   E G + ++Q  + + I+T     +D +  +SP+DP  +LS  +     +E+ +    PY  ++GKLM+LA  TRPD+A  V +LG  ++ P  +HW   + VLRYL GT +  +    + D      +I +SDSDW    + R+S TG I+    +P+ W+S +Q  +A+
Sbjct:  668 EPKTFKQAMDGPDHKLWKEAVEEELTSLKNMNVWELTDLPPGKSAIGCKWVFKIKYLADGSVERYKARLVAQGFTQEYGVDYNETYSPVVSLPTIRLFLKLAVENNWLVHQMDVKTAYLNGELKEEIYMRLPEGIITEESEKKVCRLLKSLYGLKQSGRAWYETLERKLLEGGMKKSKSESCIYFEKS-DGVIKIILVYVDDLILISSNLEAMSDMKIMLGRNFEMKDLGNLNYILGIEVKRQEDGSLFMNQWKYLQEIIT-AFHMIDCKSISSPMDPSQELSKSQCPITVQEKNEIANVPYRRLVGKLMYLAQATRPDIAFFVSKLGQFSSNPGKQHWAAAKRVLRYLKGTENYQLKITKDNDQ-----IIAHSDSDWAGSKDDRKSTTGFIIKIGRTPVIWKSNKQACIAL 1073          
BLAST of mRNA_S-ischiensis_contig9.20508.1 vs. uniprot
Match: A0A7D9HZ03_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HZ03_PARCT)

HSP 1 Score: 262 bits (670), Expect = 1.130e-76
Identity = 139/409 (33.99%), Postives = 241/409 (58.92%), Query Frame = 1
Query:    1 EPSTTREALAGPDADKWQEAMDKELQGLWNKGAFSDEPAPPDRKPVKTHYVYKIKHKADGSVERYKVRLVARGFTQQQRVDFFQTFSPVFGLDVMRSVLATAVRHGWAIHSLDFTQAYLNASLQEDIWLELPDGHIVKA--------NKVLYGLKQSALEWYKELRSKILGEGWSSSANDECLYYRRSEDGRVAVLLTYVDDTAFTGDYDEEIKRMRDTLLSTYEGRDLGIPDQLLGVWITTDETGIILDQLLHTKSIVTEGMGSLDLQITTSPLDPGVDLSARRDDKEELDCKLYPYANILGKLMFLAGMTRPDLASSVWELGHCAAPPCMRHWRGQQHVLRYLAGTLDVCIHYAANTDSDDERVLIGYSDSDWGNDIEMRRSVTGCILLYDGSPIAWRSKQQGAVAV 1203
            EP+T  EAL GP+A++W EAM +E+  L     +     P DRK V   +V+K+KH ADGS+ER+K RLVA+GF+Q+  VD+ +TFSPV   + +R+V+A +V+ G  +H +D T A+LN  L+++++++ P+G  VK         NK LYGLKQS+  W   L   +   G++ + +D C+Y +  EDG + V+  +VDD    G  DE+I ++++++   ++ +D+G    +LG+ +  ++  + + Q  +T SI+ +  G  + +   +P+D    L +  +D E  + + +  A  +G L++L+  TRPD+  +V  +   +A P   HW   + + RYL GT++  + Y+ N + D     +G+SD+DW  D+  R+S +G     +G+ ++WRSK+Q  VA+
Sbjct:  145 EPTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELTELPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFESIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLACKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKE-EDGNIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAKVWIGQPTYTASIIKK-YGMENCKPVETPVDLSSKLVSAMEDSELFNKEEHQSA--VGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPD----CVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVAL 545          
BLAST of mRNA_S-ischiensis_contig9.20508.1 vs. uniprot
Match: A0A0A9WI29_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WI29_LYGHE)

HSP 1 Score: 249 bits (636), Expect = 1.700e-74
Identity = 137/376 (36.44%), Postives = 220/376 (58.51%), Query Frame = 1
Query:    1 EPSTTREALAGPDADKWQEAMDKELQGLWNKGAFSDEPAPPDRKPVKTHYVYKIKHKADGSVERYKVRLVARGFTQQQRVDFFQTFSPVFGLDVMRSVLATAVRHGWAIHSLDFTQAYLNASLQEDIWLELPDGHIVKANKV------LYGLKQSALEWYKELRSKILGEGWSSSANDECLYYRRSEDGRVAVLLTYVDDTAFTGDYDEEIKRMRDTLLSTYEGRDLGIPDQLLGVWITTDETGIILDQLLHTKSIVTEGMGSLDLQITTSPLDPGVDLSAR---RDDKEELDCKLYPYANILGKLMFLAGMTRPDLASSVWELGHCAAPPCMRHWRGQQHVLRYLAGTLDVCIHYAANTDSDDERVLIGYSDSDW 1101
            EP T ++A+ GP++D W+ AM++EL  L     +     PP +  + + +V+KIK+ ADG+VERYK RLVA+GFTQ+  VD+ +T+SPV  L  +R +   AV + W IH +D   AYLN  L+E+I+++ PDG      KV      LYGLKQS   WY++L  K+L  G +   ++ C+YYRR  +  V ++L YVDD       +E +  M++ L   ++ +DLG  + +LG+ +   +  + L+Q+ + K I++E     D +  ++P++   ++  +   + D+E  + +  PY  ++GKLM+L+  TRPDL  +V +LG  ++ P   HW   +  LRYL GT++    Y    D  D+  L+GYSDSDW
Sbjct:   25 EPKTFKQAMEGPESDLWKAAMEEELTSLEVMKVWEFTELPPGKTAIGSKWVFKIKYMADGTVERYKARLVAQGFTQKPGVDYEETYSPVISLPAIRLLFKLAVNNNWIIHQMDVKTAYLNGELKEEIYMKCPDGITGAEGKVCRLLRSLYGLKQSGRSWYEKLDEKLLEGGMNKCKSEPCIYYRRCNEN-VKIILVYVDDLILISSSEECMVEMKEMLRRNFDMKDLGELNYILGIEVKKGDHSLRLNQVKYIKEILSE-FNMSDCKSVSTPMETNYNIGKQHCPKSDEERKEMEKVPYRRLVGKLMYLSQATRPDLGFAVSKLGQFSSNPGKVHWMAAKRELRYLKGTMN----YEFIIDKGDDD-LVGYSDSDW 393          
BLAST of mRNA_S-ischiensis_contig9.20508.1 vs. uniprot
Match: A0A6S7HEL0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=4 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HEL0_PARCT)

HSP 1 Score: 264 bits (674), Expect = 5.110e-74
Identity = 144/413 (34.87%), Postives = 246/413 (59.56%), Query Frame = 1
Query:    1 EPSTTREALAGPDADKWQEAMDKELQGLWNKGAFSDEPAPPDRKPVKTHYVYKIKHKADGSVERYKVRLVARGFTQQQRVDFFQTFSPVFGLDVMRSVLATAVRHGWAIHSLDFTQAYLNASLQEDIWLELPDG-------HIV-KANKVLYGLKQSALEWYKELRSKILGEGWSSSANDECLYYRRSEDGRVAVLLTYVDDTAFTGDYDEEIKRMRDTLLSTYEGRDLGIPDQLLGVWITTDETGIILDQLLHTKSIVTE-GMGSLDLQITTSPLDPGVDLSARRDDKEELDCKLY---PYANILGKLMFLAGMTRPDLASSVWELGHCAAPPCMRHWRGQQHVLRYLAGTLDVCIHYAANTDSDDERVLIGYSDSDWGNDIEMRRSVTGCILLYDGSPIAWRSKQQGAVAV 1203
            EP+T  EAL GP+A++W EAM +E+  L     +     P DRK V   +V+K+KH ADGS+ER+K RLVA+GF+Q+  VD+ +TFSPV   + +R+V+A +V+ G  +H +D T A+LN  L+++++++ P+G       H+V K NK LYGLKQS+  W   L   +   G++ + +D C+Y +  EDG + V+  +VDD    G  DE+I ++++++   ++ +D+G    +LG+ +  ++  + + Q  +T SI+ + GM +        P++  VDLS++     E D +L+    Y + +G L++L+  TRPD+  +V  +   +A P   HW   + + RYL GT++  + Y+ N + D     +G+SD+DW  D+  R+S +G     +G+ ++WRSK+Q  VA+
Sbjct:  759 EPTTVSEALCGPNAERWHEAMQQEMDSLQEHDVWELTELPKDRKAVGCKWVFKVKHNADGSIERHKARLVAQGFSQRFGVDYDETFSPVVRFEKIRTVIALSVQRGLKLHQMDVTAAFLNGELEDEVYMKQPEGFEVKGKEHLVCKLNKSLYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVKE-EDGDIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQVIQEDAKVWIGQPTYTASIIKKYGMENC------KPVETPVDLSSKLVSAIE-DSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANPTNEHWTAVKRIFRYLKGTVNYGLLYSENANPD----CVGFSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVAL 1159          
BLAST of mRNA_S-ischiensis_contig9.20508.1 vs. uniprot
Match: A0A383VEJ4_TETOB (Integrase catalytic domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VEJ4_TETOB)

HSP 1 Score: 263 bits (671), Expect = 1.670e-73
Identity = 158/409 (38.63%), Postives = 225/409 (55.01%), Query Frame = 1
Query:    1 EPSTTREALAGPDADKWQEAMDKELQGLWNKGAFSDEPAPPDRKPVKTHYVYKIKHKADGSVERYKVRLVARGFTQQQRVDFFQTFSPVFGLDVMRSVLATAVRHGWAIHSLDFTQAYLNASLQEDIWLELPDGHI-------VKANKVLYGLKQSALEWYKELRSKILGEGWSSSANDECLYYRR-SEDGRVAVLLTYVDDTAFTGDYDEEIKRMRDTLLSTYEGRDLGIPDQLLGVWITTDETGIILDQLLHTKSIVTE-GMGSLDLQITTSPLDPGVDLSARRDDKEELDCKLYPYANILGKLMFLAGMTRPDLASSVWELGHCAAPPCMRHWRGQQHVLRYLAGTLDVCIHYAANTDSDDERVLIGYSDSDWGNDIEMRRSVTGCILLYDGSPIAWRSKQQGAVA 1200
            EP   +EA + PDA  W +AMD E+QG+ + G +     PP  K + T + +K+K  +DGS ER K R+VA+GF QQ+  D+F+ F+PV     MR++ A A      IH++DF+ A+LN +L+E++W++ P+G++        K  K LYGLKQ+   W+  L   I  +G+  S  D CLYY   SE      LL YVDD A      E    +     S Y+ RDLG  +  LG+ IT   TGI L Q      +V + GM + + ++   P+ PG  L+ + +D E LD   YPYA ++G L++LA  TRPD+A  V  L    A P M HW   + VLRYLAGT    ++Y+    S     LIGY+DSD+  D + RRS  G   +   + I W+SK+Q  VA
Sbjct:  839 EPQNYKEATSRPDAPLWVDAMDTEIQGIRSNGTWVLGFPPPGTKVLDTKWTFKLKRNSDGSTERRKARVVAKGFQQQEGRDYFEIFTPVGKYTSMRALTAKAAAEDLIIHNIDFSSAFLNGTLEEEVWIKQPEGYVEGEPGMACKLVKSLYGLKQAPRAWHLNLDKIIQEKGFKPSEADPCLYYHTGSEYHPETYLLVYVDDVAIYTKSQESANALISYFSSKYKLRDLGAAELFLGISITRQPTGIKLAQERMINDLVAKYGMENSNGRLL--PMSPGTKLT-KDEDSEPLDTSKYPYATLVGALLYLANCTRPDIAYPVGVLARFMANPGMSHWHAAKGVLRYLAGTSTYGLNYSKAGSSS---TLIGYTDSDFAGDADTRRSTAGFTFIKGNAAICWQSKRQPTVA 1241          
BLAST of mRNA_S-ischiensis_contig9.20508.1 vs. uniprot
Match: Q53NX4_ORYSJ (Retrotransposon protein, putative, Ty1-copia sub-class n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q53NX4_ORYSJ)

HSP 1 Score: 251 bits (641), Expect = 5.420e-72
Identity = 140/404 (34.65%), Postives = 226/404 (55.94%), Query Frame = 1
Query:    4 PSTTREALAGPDADKWQEAMDKELQGLWNKGAFSDEPAPPDRKPVKTHYVYKIKHKADGSVERYKVRLVARGFTQQQRVDFFQTFSPVFGLDVMRSVLATAVRHGWAIHSLDFTQAYLNASLQEDIWLELPDGHIVKAN--------KVLYGLKQSALEWYKELRSKILGEGWSSSANDECLYYRRSEDGRVAVLLTYVDDTAFTGDYDEEIKRMRDTLLSTYEGRDLGIPDQLLGVWITTDETGIILDQLLHTKSIVTEGMGSLDLQITTSPLDPGVDLSA-RRDDKEELDCKLYPYANILGKLMFLAGMTRPDLASSVWELGHCAAPPCMRHWRGQQHVLRYLAGTLDVCIHYAANTDSDDERVLIGYSDSDWGNDIEMRRSVTGCILLYDGSPIAWRSKQQ 1188
            P +  EA A PDAD W+EA+  E+  +   G +     P   KPV   +V+K K + DG++E+YK RLVA+G+TQ++  DFF T+SPV  L  +R +L+ A  HG  +H +D   A+LN  L E+I+++ PDG +V+          K LYGLKQ+  +W+++    +   G+  +  D+C+YYR    G   +L  YVDD    G   E I  ++  L   ++ +DLG+ D +L + +   E GI L Q  + + I+    G +D + + +P DP + L   +R  + +L+     Y+ I+G LM+LA  TRPD++ +V +L    + P   HWR  + V+RYL GT+++ +HY          VL GYSDS+W +D++  ++ +G +    G  ++WRS +Q
Sbjct:  184 PKSISEAYASPDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFVVNEADKCVYYRHGG-GEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNR-FGYIDSKPSPTPYDPSLLLRKNKRIARNQLE-----YSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYP-----AVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQ 575          
BLAST of mRNA_S-ischiensis_contig9.20508.1 vs. uniprot
Match: A0A5N6NFL8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NFL8_9ASTR)

HSP 1 Score: 244 bits (624), Expect = 5.680e-71
Identity = 137/408 (33.58%), Postives = 222/408 (54.41%), Query Frame = 1
Query:    1 EPSTTREALAGPDADKWQEAMDKELQGLWNKGAFSDEPAPPDRKPVKTHYVYKIKHKADGSVERYKVRLVARGFTQQQRVDFFQTFSPVFGLDVMRSVLATAVRHGWAIHSLDFTQAYLNASLQEDIWLELPDGH--------IVKANKVLYGLKQSALEWYKELRSKILGEGWSSSANDECLYYRRSEDGRVAVLLTYVDDTAFTGDYDEEIKRMRDTLLSTYEGRDLGIPDQLLGVWITTDETGIILDQLLHTKSIVTEGMGSLDLQITTSPLDPGVDLSARRDDKEELDCKLYPYANILGKLMFLAGMTRPDLASSVWELGHCAAPPCMRHWRGQQHVLRYLAGTLDVCIHYAANTDSDDERVLIGYSDSDWGNDIEMRRSVTGCILLYDGSPIAWRSKQQGAVA 1200
            EP T REA+   +  +W+EA+  E+  +     +     PP  KP+   +++K K KADGS+++YK RLV +GF Q++ +D+F T+SPV  +  +R VLA A      +H +D   A+LN  L+E+I++E P+G         + K  K LYGLKQ+  +W+++    +L  G+  +  D+C+Y + +  G V +L  YVDD    G  D+ IK  +D L + ++ +D+G+ D +LGV I   + G++L Q  +   I+ E   + D  +  +P+D    LS  R +          Y+ I+G LM L   TRPDLA +V  L    + P   HW+    +LRYL  T +  +HY       D  V+ GYSD++W +D++  +S +G +    G+ IAW+S +Q  +A
Sbjct:  135 EPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGFSALGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFKINECDKCVYVKNTTRGYV-ILCLYVDDMLIVGSDDKMIKSTKDMLKARFDMKDMGLADVILGVKINRTQNGLVLSQSHYVDKIL-EKFNAGDTSVAQTPIDTTQHLSKNRGE----GVAQLEYSRIIGSLMCLMTCTRPDLAYAVSRLSRYTSNPSSEHWKSMIRLLRYLRYTRNYGLHYGR-----DPAVIEGYSDANWISDMKDSKSTSGYVFTLGGAAIAWKSSKQTLIA 531          
BLAST of mRNA_S-ischiensis_contig9.20508.1 vs. uniprot
Match: Q10G43_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q10G43_ORYSJ)

HSP 1 Score: 249 bits (635), Expect = 9.730e-71
Identity = 139/404 (34.41%), Postives = 226/404 (55.94%), Query Frame = 1
Query:    4 PSTTREALAGPDADKWQEAMDKELQGLWNKGAFSDEPAPPDRKPVKTHYVYKIKHKADGSVERYKVRLVARGFTQQQRVDFFQTFSPVFGLDVMRSVLATAVRHGWAIHSLDFTQAYLNASLQEDIWLELPDGHIVKAN--------KVLYGLKQSALEWYKELRSKILGEGWSSSANDECLYYRRSEDGRVAVLLTYVDDTAFTGDYDEEIKRMRDTLLSTYEGRDLGIPDQLLGVWITTDETGIILDQLLHTKSIVTEGMGSLDLQITTSPLDPGVDLSA-RRDDKEELDCKLYPYANILGKLMFLAGMTRPDLASSVWELGHCAAPPCMRHWRGQQHVLRYLAGTLDVCIHYAANTDSDDERVLIGYSDSDWGNDIEMRRSVTGCILLYDGSPIAWRSKQQ 1188
            P +  EA A  DAD W+EA+  E+  +   G +     P   KPV   +V+K K + DG++E+YK RLVA+G+TQ++  DFF T+SPV  L  +R +L+ A  HG  +H +D   A+LN  L E+I+++ PDG +V+          K LYGLKQ+  +W+++    +   G++ +  D+C+YYR    G   +L  YVDD    G   E I  ++  L   ++ +DLG+ D +L + +   E GI L Q  + + I+    G +D + + +P DP + L   +R  + +L+     Y+ I+G LM+LA  TRPD++ +V +L    + P   HWR  + V+RYL GT+++ +HY          VL GYSDS+W +D++  ++ +G +    G  ++WRS +Q
Sbjct:  215 PKSISEAYASRDADYWKEAVRSEMDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRVLLSLAASHGLLVHQMDVKTAFLNGELDEEIYMDQPDGFVVEGQEGKVCKLLKSLYGLKQAPKQWHEKFDKTLTSAGFAVNEADKCVYYRHGG-GEGVILCLYVDDILIFGTNLEVINEVKSFLSQNFDMKDLGVADVILNIKLIRGENGITLLQSHYVEKILNR-FGYIDSKPSPTPYDPSLLLRKNKRIARNQLE-----YSQIIGSLMYLASATRPDISFAVSKLSRFTSNPGDDHWRALERVMRYLKGTVELGLHYTGYP-----AVLEGYSDSNWISDVDEIKATSGYVFTLGGGAVSWRSCKQ 606          
BLAST of mRNA_S-ischiensis_contig9.20508.1 vs. uniprot
Match: A0A5N6MBP8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6MBP8_9ASTR)

HSP 1 Score: 246 bits (629), Expect = 9.870e-71
Identity = 137/408 (33.58%), Postives = 223/408 (54.66%), Query Frame = 1
Query:    1 EPSTTREALAGPDADKWQEAMDKELQGLWNKGAFSDEPAPPDRKPVKTHYVYKIKHKADGSVERYKVRLVARGFTQQQRVDFFQTFSPVFGLDVMRSVLATAVRHGWAIHSLDFTQAYLNASLQEDIWLELPDGH--------IVKANKVLYGLKQSALEWYKELRSKILGEGWSSSANDECLYYRRSEDGRVAVLLTYVDDTAFTGDYDEEIKRMRDTLLSTYEGRDLGIPDQLLGVWITTDETGIILDQLLHTKSIVTEGMGSLDLQITTSPLDPGVDLSARRDDKEELDCKLYPYANILGKLMFLAGMTRPDLASSVWELGHCAAPPCMRHWRGQQHVLRYLAGTLDVCIHYAANTDSDDERVLIGYSDSDWGNDIEMRRSVTGCILLYDGSPIAWRSKQQGAVA 1200
            EP T REA+   +  +W+EA+  E+  +     +     PP  KP+   +++K K KADGS+++YK RLV +GF Q++ +D+F T+SPV  +  +R VLA A      +H +D   A+LN  L+E+I++E P+G         + K  K LYGLKQ+  +W+++    +L  G+  +  D+C+Y + +  G V +L  YVDD    G  D+ IK  +D L + ++ +D+G+ D +LGV I   + G++L Q  +   I+ E   + D  +  +P+D    LS  R +          Y+ I+G LM+L   TRPDLA +V  L    + P   HW+    +LRYL  T +  +HY       D  V+ GYSD++W +D++  +S +G +    G+ IAW+S +Q  +A
Sbjct:  135 EPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVKTAFLNGDLEEEIYMEQPEGFSAPGQEGKVCKLVKSLYGLKQAPKQWHQKFDQVMLNNGFKINECDKCVYVKNTTRGYV-ILCLYVDDMLIVGSDDKMIKSTKDMLKARFDMKDMGLADVILGVKINRTQNGLVLSQSHYVDKIL-EKFNAGDTSVAQTPIDTTQHLSKNRGE----GVAQLEYSRIIGSLMYLMTCTRPDLAYAVSRLSRYTSNPSSEHWKSMIRLLRYLRYTRNYGLHYGR-----DPAVIEGYSDANWISDMKDSKSTSGYVFTLGGAAIAWKSSKQTLIA 531          
BLAST of mRNA_S-ischiensis_contig9.20508.1 vs. uniprot
Match: A0A445J0X7_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445J0X7_GLYSO)

HSP 1 Score: 242 bits (618), Expect = 4.000e-70
Identity = 145/451 (32.15%), Postives = 244/451 (54.10%), Query Frame = 1
Query:    1 EPSTTREALAGPDADKWQEAMDKELQGLWNKGAFSDEPAPPDRKPVKTHYVYKIKHKADGSVERYKVRLVARGFTQQQRVDFFQTFSPVFGLDVMRSVLATAVRHGWAIHSLDFTQAYLNASLQEDIWLELPDGHIV--------KANKVLYGLKQSALEWYKELRSKILGEGWSSSANDECLYYRRSEDGRVAVLLTYVDDTAFTGDYDEEIKRMRDTLLSTYEGRDLGIPDQLLGVWITTDETGIILDQLLHTKSIVTEGMGSLDLQITTSPLDPGVDLSARRDDKEELDCKLYPYANILGKLMFLAGMTRPDLASSVWELGHCAAPPCMRHWRGQQHVLRYLAGTLDVCIHYAANTDSDDERVLIGYSDSDWGNDIEMRRSVTGCILLYDGSPIAWRSKQQGAVA---VEHGGRVDGDGTRNAALHFLRNILGEI---DRGLGTIGVH 1311
            +PS  +EAL+  DAD WQEA++ E+  L +   +     PP  KP+   ++ K K K DG+V++YK RLVA+GF Q++ VDFF TFSPV  +  +R +++ A  H   +H +D   A+LN  L+E+I++E P+G ++        K +K LYGLKQ+  +W+++  + I+  G+  + +D+C+YY+ S +    ++  YVDD    G     +  ++  L + ++ +DLG    +LG+ IT  + GI LDQ  + + I+ +     D +  ++P DP V L     +      +   YA+I+G L +    TRPD+A  V  L    + P M HW   + V+RYL  T+++ +HY          VL GY+D+DW       ++ +G I    G  ++W+SK+Q  +A   +E+   +    T      +LR++L EI   +R + T+ +H
Sbjct:   29 DPSNLQEALSSLDADLWQEAINDEMDSLESNKTWHLVDLPPGCKPIGCKWILKKKLKPDGTVDKYKARLVAKGFRQRENVDFFDTFSPVTRITSIRVLISLAAIHSLVVHQMDVKTAFLNGELEEEIYMEQPEGFVIHGQEDKVYKLDKSLYGLKQAPKQWHEKFDNLIVSNGFKVNESDKCIYYK-SVNNICTIICVYVDDLLIFGSNIHVVNNVKSLLCNNFDMKDLGEASVILGIKITRSKEGISLDQSHYIEKILKK-YDYFDCKPASTPYDPSVKLFKNTGE----GIRQTEYASIIGSLRYATDCTRPDIAYVVGLLCRFTSRPSMEHWHAIERVMRYLKRTINLGLHYKRFP-----AVLEGYNDADWNILSYDSKATSGYIFSIAGGAVSWKSKKQTILAQSTMEY--EMMALATAGEEASWLRSLLAEIPLWERSIPTVLIH 466          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A9W6P7_LYGHE1.730e-7736.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A7D9HZ03_PARCT1.130e-7633.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0A9WI29_LYGHE1.700e-7436.44Retrovirus-related Pol polyprotein from transposon... [more]
A0A6S7HEL0_PARCT5.110e-7434.87Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A383VEJ4_TETOB1.670e-7338.63Integrase catalytic domain-containing protein n=1 ... [more]
Q53NX4_ORYSJ5.420e-7234.65Retrotransposon protein, putative, Ty1-copia sub-c... [more]
A0A5N6NFL8_9ASTR5.680e-7133.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
Q10G43_ORYSJ9.730e-7134.41Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A5N6MBP8_9ASTR9.870e-7133.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A445J0X7_GLYSO4.000e-7032.15Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:906199..907676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score235.0
Seed ortholog evalue6.8e-59
Seed eggNOG ortholog15368.BRADI3G03845.1
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37V5Q@33090,3GFFK@35493,3IKJW@38820,3M7B5@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1478
Cds size1305
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20508.1prot_S-ischiensis_contig9.20508.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 906259..907563 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817381.8298876-UTR-S-ischiensis_contig9:906198..9062581622817381.8298876-UTR-S-ischiensis_contig9:906198..906258Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 906199..906258 +
1695741070.8610067-UTR-S-ischiensis_contig9:906198..9062581695741070.8610067-UTR-S-ischiensis_contig9:906198..906258Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 906199..906258 +
1622817381.8518932-UTR-S-ischiensis_contig9:907563..9076761622817381.8518932-UTR-S-ischiensis_contig9:907563..907676Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 907564..907676 +
1695741070.8846827-UTR-S-ischiensis_contig9:907563..9076761695741070.8846827-UTR-S-ischiensis_contig9:907563..907676Schizocladia ischiensis KU_0333UTRS-ischiensis_contig9 907564..907676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817381.8414457-CDS-S-ischiensis_contig9:906258..9075631622817381.8414457-CDS-S-ischiensis_contig9:906258..907563Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 906259..907563 +
1695741070.8730102-CDS-S-ischiensis_contig9:906258..9075631695741070.8730102-CDS-S-ischiensis_contig9:906258..907563Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 906259..907563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20508.1

>prot_S-ischiensis_contig9.20508.1 ID=prot_S-ischiensis_contig9.20508.1|Name=mRNA_S-ischiensis_contig9.20508.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=435bp
MDKELQGLWNKGAFSDEPAPPDRKPVKTHYVYKIKHKADGSVERYKVRLV
ARGFTQQQRVDFFQTFSPVFGLDVMRSVLATAVRHGWAIHSLDFTQAYLN
ASLQEDIWLELPDGHIVKANKVLYGLKQSALEWYKELRSKILGEGWSSSA
NDECLYYRRSEDGRVAVLLTYVDDTAFTGDYDEEIKRMRDTLLSTYEGRD
LGIPDQLLGVWITTDETGIILDQLLHTKSIVTEGMGSLDLQITTSPLDPG
VDLSARRDDKEELDCKLYPYANILGKLMFLAGMTRPDLASSVWELGHCAA
PPCMRHWRGQQHVLRYLAGTLDVCIHYAANTDSDDERVLIGYSDSDWGND
IEMRRSVTGCILLYDGSPIAWRSKQQGAVAVEHGGRVDGDGTRNAALHFL
RNILGEIDRGLGTIGVHSKRQLLPASADAPSMWT*
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mRNA from alignment at S-ischiensis_contig9:906199..907676+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20508.1 ID=mRNA_S-ischiensis_contig9.20508.1|Name=mRNA_S-ischiensis_contig9.20508.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1478bp|location=Sequence derived from alignment at S-ischiensis_contig9:906199..907676+ (Schizocladia ischiensis KU_0333)
GAGCCGTCTACAACGAGGGAGGCGTTGGCGGGGCCGGATGCAGACAAGTG GCAGGAGGCGATGGACAAGGAGTTGCAAGGCCTGTGGAACAAGGGCGCCT TCAGTGACGAGCCTGCACCGCCGGACCGGAAGCCAGTCAAGACCCACTAC GTGTACAAGATCAAGCACAAGGCGGACGGGAGCGTGGAGCGGTACAAGGT GCGACTCGTGGCGAGAGGCTTCACTCAGCAACAACGCGTGGACTTCTTCC AGACCTTCAGCCCCGTGTTTGGCCTTGACGTGATGCGGTCGGTCTTGGCC ACTGCTGTGCGTCACGGATGGGCCATTCACTCCCTGGACTTCACCCAAGC GTACCTGAATGCATCTCTTCAAGAAGACATCTGGCTCGAGCTACCGGACG GGCACATCGTCAAGGCGAACAAGGTGCTCTACGGCTTGAAGCAATCTGCT CTGGAGTGGTACAAGGAGCTACGGAGCAAAATCCTGGGGGAGGGCTGGAG CAGCAGCGCCAATGACGAGTGTCTCTACTACCGCCGGAGCGAGGACGGGC GTGTTGCCGTACTACTGACGTATGTCGACGACACTGCCTTCACCGGCGAC TACGACGAGGAGATCAAGAGAATGCGGGACACGCTGCTGTCTACGTACGA GGGGCGAGACTTGGGCATACCTGATCAACTGCTGGGAGTGTGGATTACCA CCGACGAGACGGGAATCATCCTGGATCAGCTACTGCACACCAAGAGCATC GTCACCGAGGGCATGGGATCTCTGGACCTGCAGATCACAACTTCACCGCT CGACCCTGGCGTGGACCTGTCTGCACGACGCGACGACAAGGAGGAGCTGG ACTGCAAGCTGTATCCGTATGCTAACATCCTGGGCAAGCTCATGTTCCTG GCAGGGATGACTCGGCCTGACCTGGCCAGCAGTGTGTGGGAGCTTGGGCA CTGTGCAGCGCCCCCGTGCATGAGACACTGGCGTGGACAGCAACATGTGC TGCGGTATCTCGCCGGAACACTGGACGTGTGCATCCACTACGCGGCCAAC ACGGACAGCGACGACGAGCGAGTCCTCATCGGCTACTCGGACTCCGACTG GGGCAATGACATCGAAATGCGGCGGAGTGTGACGGGGTGCATCCTACTCT ACGATGGATCGCCAATTGCGTGGCGTTCCAAGCAGCAAGGTGCCGTCGCT GTCGAGCACGGAGGCAGAGTGGACGGCGATGGCACAAGGAATGCGGCACT GCATTTCCTCCGCAACATACTGGGGGAGATTGACCGTGGTTTGGGGACAA TCGGGGTGCACTCCAAGCGGCAACTACTACCGGCTTCAGCGGACGCACCA AGCATGTGGACATGAAGCTCAAGTGCACGCACGAGTACATGGAGCAGGGC CTCTTCACCGTCCAGTACGTGCCAACGACGGAGCAACTGGCGGACATCCT GACCAAGCGCCTGCGTAAGGCTCAGAAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:906199..907676+

>mRNA_S-ischiensis_contig9.20508.1 ID=mRNA_S-ischiensis_contig9.20508.1|Name=mRNA_S-ischiensis_contig9.20508.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2610bp|location=Sequence derived from alignment at S-ischiensis_contig9:906199..907676+ (Schizocladia ischiensis KU_0333)
ATGGACAAGGAGTTGCAAGGCCTGTGGAACAAGGGCGCCTTCAGTGACGA
GCCTGCACCGCCGGACCGGAAGCCAGTCAAGACCCACTACGTGTACAAGA
TCAAGCACAAGGCGGACGGGAGCGTGGAGCGGTACAAGGTGCGACTCGTG
GCGAGAGGCTTCACTCAGCAACAACGCGTGGACTTCTTCCAGACCTTCAG
CCCCGTGTTTGGCCTTGACGTGATGCGGTCGGTCTTGGCCACTGCTGTGC
GTCACGGATGGGCCATTCACTCCCTGGACTTCACCCAAGCGTACCTGAAT
GCATCTCTTCAAGAAGACATCTGGCTCGAGCTACCGGACGGGCACATCGT
CAAGGCGAACAAGGTGCTCTACGGCTTGAAGCAATCTGCTCTGGAGTGGT
ACAAGGAGCTACGGAGCAAAATCCTGGGGGAGGGCTGGAGCAGCAGCGCC
AATGACGAGTGTCTCTACTACCGCCGGAGCGAGGACGGGCGTGTTGCCGT
ACTACTGACGTATGTCGACGACACTGCCTTCACCGGCGACTACGACGAGG
AGATCAAGAGAATGCGGGACACGCTGCTGTCTACGTACGAGGGGCGAGAC
TTGGGCATACCTGATCAACTGCTGGGAGTGTGGATTACCACCGACGAGAC
GGGAATCATCCTGGATCAGCTACTGCACACCAAGAGCATCGTCACCGAGG
GCATGGGATCTCTGGACCTGCAGATCACAACTTCACCGCTCGACCCTGGC
GTGGACCTGTCTGCACGACGCGACGACAAGGAGGAGCTGGACTGCAAGCT
GTATCCGTATGCTAACATCCTGGGCAAGCTCATGTTCCTGGCAGGGATGA
CTCGGCCTGACCTGGCCAGCAGTGTGTGGGAGCTTGGGCACTGTGCAGCG
CCCCCGTGCATGAGACACTGGCGTGGACAGCAACATGTGCTGCGGTATCT
CGCCGGAACACTGGACGTGTGCATCCACTACGCGGCCAACACGGACAGCG
ACGACGAGCGAGTCCTCATCGGCTACTCGGACTCCGACTGGGGCAATGAC
ATCGAAATGCGGCGGAGTGTGACGGGGTGCATCCTACTCTACGATGGATC
GCCAATTGCGTGGCGTTCCAAGCAGCAAGGTGCCGTCGCTGTCGAGCACG
GAGGCAGAGTGGACGGCGATGGCACAAGGAATGCGGCACTGCATTTCCTC
CGCAACATACTGGGGGAGATTGACCGTGGTTTGGGGACAATCGGGGTGCA
CTCCAAGCGGCAACTACTACCGGCTTCAGCGGACGCACCAAGCATGTGGA
CATGAATGGACAAGGAGTTGCAAGGCCTGTGGAACAAGGGCGCCTTCAGT
GACGAGCCTGCACCGCCGGACCGGAAGCCAGTCAAGACCCACTACGTGTA
CAAGATCAAGCACAAGGCGGACGGGAGCGTGGAGCGGTACAAGGTGCGAC
TCGTGGCGAGAGGCTTCACTCAGCAACAACGCGTGGACTTCTTCCAGACC
TTCAGCCCCGTGTTTGGCCTTGACGTGATGCGGTCGGTCTTGGCCACTGC
TGTGCGTCACGGATGGGCCATTCACTCCCTGGACTTCACCCAAGCGTACC
TGAATGCATCTCTTCAAGAAGACATCTGGCTCGAGCTACCGGACGGGCAC
ATCGTCAAGGCGAACAAGGTGCTCTACGGCTTGAAGCAATCTGCTCTGGA
GTGGTACAAGGAGCTACGGAGCAAAATCCTGGGGGAGGGCTGGAGCAGCA
GCGCCAATGACGAGTGTCTCTACTACCGCCGGAGCGAGGACGGGCGTGTT
GCCGTACTACTGACGTATGTCGACGACACTGCCTTCACCGGCGACTACGA
CGAGGAGATCAAGAGAATGCGGGACACGCTGCTGTCTACGTACGAGGGGC
GAGACTTGGGCATACCTGATCAACTGCTGGGAGTGTGGATTACCACCGAC
GAGACGGGAATCATCCTGGATCAGCTACTGCACACCAAGAGCATCGTCAC
CGAGGGCATGGGATCTCTGGACCTGCAGATCACAACTTCACCGCTCGACC
CTGGCGTGGACCTGTCTGCACGACGCGACGACAAGGAGGAGCTGGACTGC
AAGCTGTATCCGTATGCTAACATCCTGGGCAAGCTCATGTTCCTGGCAGG
GATGACTCGGCCTGACCTGGCCAGCAGTGTGTGGGAGCTTGGGCACTGTG
CAGCGCCCCCGTGCATGAGACACTGGCGTGGACAGCAACATGTGCTGCGG
TATCTCGCCGGAACACTGGACGTGTGCATCCACTACGCGGCCAACACGGA
CAGCGACGACGAGCGAGTCCTCATCGGCTACTCGGACTCCGACTGGGGCA
ATGACATCGAAATGCGGCGGAGTGTGACGGGGTGCATCCTACTCTACGAT
GGATCGCCAATTGCGTGGCGTTCCAAGCAGCAAGGTGCCGTCGCTGTCGA
GCACGGAGGCAGAGTGGACGGCGATGGCACAAGGAATGCGGCACTGCATT
TCCTCCGCAACATACTGGGGGAGATTGACCGTGGTTTGGGGACAATCGGG
GTGCACTCCAAGCGGCAACTACTACCGGCTTCAGCGGACGCACCAAGCAT
GTGGACATGA
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