mRNA_S-ischiensis_contig9.20503.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20503.1
Unique NamemRNA_S-ischiensis_contig9.20503.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:834158..835548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size295
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817364.7262623-CDS-S-ischiensis_contig9:834157..8343791622817364.7262623-CDS-S-ischiensis_contig9:834157..834379Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 834158..834379 +
1695741059.129112-CDS-S-ischiensis_contig9:834157..8343791695741059.129112-CDS-S-ischiensis_contig9:834157..834379Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 834158..834379 +
1622817364.737828-CDS-S-ischiensis_contig9:835476..8355481622817364.737828-CDS-S-ischiensis_contig9:835476..835548Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 835477..835548 +
1695741059.1375966-CDS-S-ischiensis_contig9:835476..8355481695741059.1375966-CDS-S-ischiensis_contig9:835476..835548Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 835477..835548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20503.1prot_S-ischiensis_contig9.20503.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 834158..835548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20503.1

>prot_S-ischiensis_contig9.20503.1 ID=prot_S-ischiensis_contig9.20503.1|Name=mRNA_S-ischiensis_contig9.20503.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=98bp
APPLSAWSAATGPMAGGVTEPGAPWRRGFFLVSSLVFCPPSTSGLQLGIA
SWPTKRACGRQPQTGAGGRHLADQASRRPRARVTCSAVAPKAPLGPGS
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mRNA from alignment at S-ischiensis_contig9:834158..835548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20503.1 ID=mRNA_S-ischiensis_contig9.20503.1|Name=mRNA_S-ischiensis_contig9.20503.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1391bp|location=Sequence derived from alignment at S-ischiensis_contig9:834158..835548+ (Schizocladia ischiensis KU_0333)
GCACCTCCACTCTCAGCTTGGAGTGCCGCAACGGGGCCCATGGCCGGGGG
GGTTACCGAGCCAGGTGCACCATGGAGGAGAGGGTTCTTTCTTGTCAGCT
CCCTCGTTTTCTGTCCTCCGTCGACCTCGGGGCTACAGCTGGGAATAGCG
TCTTGGCCCACAAAGCGGGCGTGTGGCCGACAGCCGCAAACTGGCGCGGG
GGGCAGGCACTTGGCTGACCAGGTACGGTGTAGTTTGTGTTCCACAGAAA
CTCTTGCCCGTGTCGTCTCACGGTCGCCCTGGTTGCATTGCTGTCCTCGC
AAGCGCGAGTAGGCCGCAATAGCCCGTTTTTCTCGCTCGAGCAACCTGTG
TTGCAACTGTCCTGAGCGGGCGTTTGGCCATAAGCAAGGTGGGACCGCGG
TTTCGGGGCCAAGCCTAGCCGTGCCTCAGAATCTAGAGGCCGTGCCTGTG
ACACCTGGGGCGCCCTCACCCCCAACAGACCACTGCGCTGAGCCCCATTC
CGAGCACTGTTTTAGAACTGTTGGCGATGTGCACATATGCTTGCCGTAGT
CCCGAGACCGTTGCTCGTGTAAGTACGTGTAATTGCATGAATTAATCGTC
CCCTGGCTCACCAGAGTGGCAACCAGCGCGCACTCAATGTGGTGTATACC
ACAGTAAATCAGGCACACCCTGCTGAATGCCAGTGGGCCCAGCCTAGTGT
GCCTCGGCCGTGCTACAGCTGTTGTATGGCAACCAGTGATGGAATATCTA
CGCAAATCAACCTATGTATCGACACTGCTGATCTATATATGTATCGATAG
TCAATGTTCGATAGTTTTACCCGCACTAAATCCGTAGTTAGCAATGCCAC
CCACAAAATCAGTAGAGCCTGATAGCTATCTACTGATCGATATTCCATCA
CTGACGACAACAGTGTCCTATACGGCGTGTAGGGGCCGATTTTCAAGCGG
CCGCTAGGATCATCCGATGCCTGGGGAGACACTACAGTACCGCAGTTGTC
CTGCTCGAAGCACTCTTTGTCTGCGAGCTCTGCGAGGGATGTGACAATCA
CTATATATGAACACTCTATTCTTAAATGGGACAACTACTGTGTGTGTGTA
CTCATGGCGGATGGGGATCCCACCCTGCGCTTGCCACCGACTCGGGCCAG
TGTACTCCGTGCTGACTACTACAGTAGTTGCTGATACGAGAACAGTCAAT
TTCACACACGTGCGATTGTACCTCGTTAGAATGCATATGAATCACGGCCA
AGCCTCGCACGATGACAACGGCCCGCACTAAACCCCCCCGCCCCCGCTCC
CCCGCCCCTGCTCGTCAAGGCCTCGCGCCGTCCCAGGGCCCGGGTGACCT
GCTCCGCCGTCGCCCCGAAAGCGCCGCTCGGCCCGGGCAGT
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:834158..835548+

>mRNA_S-ischiensis_contig9.20503.1 ID=mRNA_S-ischiensis_contig9.20503.1|Name=mRNA_S-ischiensis_contig9.20503.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=588bp|location=Sequence derived from alignment at S-ischiensis_contig9:834158..835548+ (Schizocladia ischiensis KU_0333)
GCACCTCCACTCTCAGCTTGGAGTGCCGCAACGGGGCCCATGGCCGGGGG
GGTTACCGAGCCAGGTGCACCATGGAGGAGAGGGTTCTTTCTTGTCAGCT
CCCTCGTTTTCTGTCCTCCGTCGACCTCGGGGCTACAGCTGGGAATAGCG
TCTTGGCCCACAAAGCGGGCGTGTGGCCGACAGCCGCAAACTGGCGCGGG
GGGCAGGCACTTGGCTGACCAGGCACCTCCACTCTCAGCTTGGAGTGCCG
CAACGGGGCCCATGGCCGGGGGGGTTACCGAGCCAGGTGCACCATGGAGG
AGAGGGTTCTTTCTTGTCAGCTCCCTCGTTTTCTGTCCTCCGTCGACCTC
GGGGCTACAGCTGGGAATAGCGTCTTGGCCCACAAAGCGGGCGTGTGGCC
GACAGCCGCAAACTGGCGCGGGGGGCAGGCACTTGGCTGACCAGGCCTCG
CGCCGTCCCAGGGCCCGGGTGACCTGCTCCGCCGTCGCCCCGAAAGCGCC
GCTCGGCCCGGGCAGTGCCTCGCGCCGTCCCAGGGCCCGGGTGACCTGCT
CCGCCGTCGCCCCGAAAGCGCCGCTCGGCCCGGGCAGT
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