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Homology
BLAST of mRNA_S-ischiensis_contig9.20502.1 vs. uniprot
Match: A0A835Z165_9STRA (Acyltransferase family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z165_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 3.990e-16 Identity = 63/147 (42.86%), Postives = 85/147 (57.82%), Query Frame = 3
Query: 108 CSTLCQGAFAAGLLPASMMQADCQSVCEALAL---DLRANPCAVAVADLVDHPDRAAEMAFSSGNVGSALGLLLLAGNGSAEATAFVSGLHLNDPGSPDACEAVEGAHYCLASAS-----LAISLGVCLPRECDEATALQLIQNFTS 524
C+++C G + M+ DCQ C AL ANPC A+A + R M+FSSG++ SA+GLLL A NGSA A F+ ++ND G+PDAC AV+GAHYCL +A+ L + LG CLPR C + T L + N T+
Sbjct: 48 CASIC------GTIGKDML--DCQERCLALLQPDPSGPANPCRSAIAAVSTDTFRIEAMSFSSGHIASAIGLLLQAANGSAAAAQFLP--YVNDLGAPDACAAVDGAHYCLVAAAPGASPLPLRLGACLPRACRQDT-LGAMTNLTA 183
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 72.8 |
| Seed ortholog evalue | 2.4e-10 |
| Seed eggNOG ortholog | 2880.D7G7D7 |
| EggNOG free text desc. | transferase activity, transferring acyl groups |
| EggNOG OGs | KOG3700@1,KOG3700@2759 |
| COG Functional cat. | V |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | signal peptide |
| Exons | 4 |
| Model size | 709 |
| Cds size | 687 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817381.525265-CDS-S-ischiensis_contig9:830624..830714 | 1622817381.525265-CDS-S-ischiensis_contig9:830624..830714 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 830625..830714 - |
| 1695741070.6264968-CDS-S-ischiensis_contig9:830624..830714 | 1695741070.6264968-CDS-S-ischiensis_contig9:830624..830714 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 830625..830714 - |
| 1622817381.540812-CDS-S-ischiensis_contig9:831547..831705 | 1622817381.540812-CDS-S-ischiensis_contig9:831547..831705 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 831548..831705 - |
| 1695741070.6391096-CDS-S-ischiensis_contig9:831547..831705 | 1695741070.6391096-CDS-S-ischiensis_contig9:831547..831705 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 831548..831705 - |
| 1622817381.5520825-CDS-S-ischiensis_contig9:832129..832254 | 1622817381.5520825-CDS-S-ischiensis_contig9:832129..832254 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 832130..832254 - |
| 1695741070.6486146-CDS-S-ischiensis_contig9:832129..832254 | 1695741070.6486146-CDS-S-ischiensis_contig9:832129..832254 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 832130..832254 - |
| 1622817381.5628936-CDS-S-ischiensis_contig9:833714..834028 | 1622817381.5628936-CDS-S-ischiensis_contig9:833714..834028 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 833715..834028 - |
| 1695741070.6580856-CDS-S-ischiensis_contig9:833714..834028 | 1695741070.6580856-CDS-S-ischiensis_contig9:833714..834028 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig9 833715..834028 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622817381.5733085-UTR-S-ischiensis_contig9:834028..834048 | 1622817381.5733085-UTR-S-ischiensis_contig9:834028..834048 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 834029..834048 - |
| 1695741070.6677768-UTR-S-ischiensis_contig9:834028..834048 | 1695741070.6677768-UTR-S-ischiensis_contig9:834028..834048 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig9 834029..834048 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20502.1 >prot_S-ischiensis_contig9.20502.1 ID=prot_S-ischiensis_contig9.20502.1|Name=mRNA_S-ischiensis_contig9.20502.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=229bp
MPWGGGLAGAKLPILLALILPGRGDAVPACSTLCQGAFAAGLLPASMMQA
DCQSVCEALALDLRANPCAVAVADLVDHPDRAAEMAFSSGNVGSALGLLL
LAGNGSAEATAFVSGLHLNDPGSPDACEAVEGAHYCLASASLAISLGVCL
PRECDEATALQLIQNFTSPADATDGYAGATPAGPAPAQVLCVDGRAFSQD
AGSIAALCLIGTLAALALAGTAAVEVKQR back to topmRNA from alignment at S-ischiensis_contig9:830625..834048- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig9.20502.1 ID=mRNA_S-ischiensis_contig9.20502.1|Name=mRNA_S-ischiensis_contig9.20502.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3424bp|location=Sequence derived from alignment at S-ischiensis_contig9:830625..834048- (Schizocladia ischiensis KU_0333)
AGAGAATCACGAGCCGTGCGATGCCGTGGGGAGGAGGGCTTGCCGGGGCA
AAGCTGCCAATACTGTTGGCATTGATTCTTCCAGGGAGGGGCGATGCCGT
CCCCGCCTGCTCGACGCTGTGCCAGGGGGCGTTCGCCGCAGGGCTCCTGC
CGGCCTCCATGATGCAGGCCGATTGCCAGAGCGTGTGCGAGGCCCTTGCG
TTGGACTTGAGAGCTAACCCTTGCGCTGTGGCTGTAGCGGATCTCGTGGA
CCATCCTGACCGTGCTGCGGAGATGGCGTTTAGCAGCGGAAACGTCGGCT
CGGCGCTAGGGCTCCTTCTGCTCGCTGGAAATGGGCAAGTGCATAGTACT
TCGAAGTACGTACTAGTAACAGAGAGTACTTGTAGTAATTAGCCGGGGGG
GGGCACGGTGAGGCTCTCACGCATATCGATGGATAACAGTGAGGACCAGC
CGATCGTCTCGCCGGCCGATTCACTGCGTAACGGCAGCAGCTGTTCAGAA
AACCAGCCCCCTAGCTGCGTCTTCGAGGTACTTGGATGTGACCTCATCGC
TGTACCGACCGCCATTATATCGTGAAACTCGCGACTGCGGCGTGTCCATG
CGACAGGATAGAGTTCTGGATGCTACTAAGTACGCAACTGCTTGATCTTT
GGTGCCCAGGTCTGGGAGGGAGGTGGGTCTGGGTGTGTTCGGCTCCAGTG
TTTGCCGAGACTGCTCGCTTCAAAGTGCCGCCCCGGGCGTAAGCATGGTA
CTTTCCGCTGGCCCCGTACGTATAAGCGGTCGGTCAGTCGTGAAACACCG
CTGACAGATGCTCATCCGAAGAGAGGTCCTCTTGACCCTTGAGGCAGAGG
ATGGCGGCGCTACGGCTGTCCACCCATCCCGTACTGTCCATGCTTCAAAA
GTACTGCGAAGTAGTAGTTTTACAGTACTATAGTAGGTGAACTGTATTGT
ACCGTCGGCCTCTGCAACAAAGGTCGACGGGAACTCTGTTTGGCCGTGGT
GGCCTGGTCCCGTACCATAAGAAACGCCCCACGGTCTATAGGTGCACTGT
ACCGTCGGCCTCTGCAGCAGTAGCTTACGGGTTGACGGGATCTCTGTTCG
CCGTGGTGCATTAGTCCCCGTACCGTACGAAACCCCCCACGGTCTACAAG
TAGGTGCACTGCACCGTCGTCCTCTGCAGCACGGGTTTCGACGGTACCTC
TGTTGACCGTGGTGCACTGGTCCCGTGCTGCAGTGAACTCCCGTAGTTTT
GGGTGTGCTAAGCTTACAGTGGAGTACAGCGGGCCGCAAAGGGTCGAGTG
AATGACAATTGTTGTTTTGTTGTTGTTGTTATTGTTGTCGTTGTTGTTGT
TGTTGCTGTTGACATTGTCGTTGTCGTCGTTGTGTTGTTGTTGTCGTCGT
TCTTTCGGCTTGTGTTGTTGTTGATGATGTTGTTGGTGTTGATGTTGTTG
TCGTCGTCGTCGTGGTTGTTGTTGTTGTTGTTGTTGTTGTCGTCGTCGTC
GCAATTGTTGTTGTTGTTGTTGCTGTTGTTGTTTTTGTTTTTATCGTCGT
TGTCGTTATCTTCGTTGTATGTTGTTGTTGACGTTGTCGTTGTCGTCGTT
GTCGTTGTCGGCGTCGTTGTTGTTATTGTTGTTGTTGGCGTTGTTTTTTC
GGCCCTTGCGCAGGTCAGCGGAGGCCACGGCGTTCGTCTCCGGGCTGCAC
CTGAACGAACAACTCTGTATCTAATTTTTCCGTTGTTGTTGTTGTTGTTG
TTGTTGTCTTTGTTGTTGTTCTTATTGTTTCTGCTCCTGTGCAGGTCGGC
GGAGGCCACGGCCTTCGTATCCGGGCTGCACCTGAACGACCCCGGCTCCC
CCGACGCCTGCGAGGCGGTGGAGGGCGCGCACTACTGCCTGGCCTCCGCT
TCCTTGGCCATCAGTCTGGGTGAGTTGATGTGATGTGATGTCAAACTACA
GTGCTTTTGTGTGCACATCACATCACATCACATCACATCACACGCACACA
CACATACGGTGGAGGGCGCGCACTACTGCATGGCCTCCGCCTCCCTGGCC
ATCAGCCTTGGTTAGTTAGTTGCTCCGGGGCTGCCGTCCCTTCCTGTTTG
CCCTCTGTACACGTGTACTGTGTGTACAGGGTATGCACGTGTACTGTACA
TACAAAGTATAGGGCTCTATACGTGTGTTGTAGAGCCTCTACGTGCAAAG
CATGCACGAGTACTGCTGTACGTACAAAGTGCAAAGTATGCACGTGTACT
TCGAAGTACTACTGTCTCCTTCCCCCTCTTGGACTGACTCGTCCCCCCCC
TTCTCACCCACACCCACGCACACACCGCCCTCCCTCTCCTCAGGCGTGTG
CCTCCCGCGCGAGTGCGACGAGGCCACCGCCCTCCAGCTTATACAAAACT
TCACCTCTCCTGCCGACGCCACGGACGGGTATGCTGGCGCCACCCCCGCC
GGCCCCGCCCCGGCTCAGGTCTTGTGCGTCGACGGCCGGGCCTTCTCTCA
GGTAGGGTGTATGCTAGCCATGACACAAAAGTGCGATTCTTTTGCCCAAG
TATCGATTTGCCCGAATAGCGAATATCGATTACCGTGTTGCTCGGCCCAT
GTGACGTTGTGATAAGAAAACTATAGCGCGAATGAACGTACTCATCGAGC
TCTTTCATGTGTCAAAATTTCACGGCCATCCGATGCGTCCTTGGTAGGGC
GGCCCGGGCAAAATGACACTCAAAAATAGCGATCGCACTTTTGTGTCATG
GTTAGTGTGTGCCGTAATCGTCAGAGAGATTTTGGCCCCACGGGACAGTT
TCCGGGGGAATGTTTCTCGCCGCGAAGGTCCTGGGTTGTTGTCCCGAAAG
CCAAAGCCCTCGGAAAAGTTTCTCCCAGGTCCTGATGGAGGGAGGTTTTC
CGAGTTTTTCTGAAGTGTGCAAATCCGACCAGTATTATTTGGCGAGAAAC
GTTCCCCCGAGAATTGGCATGGGGGGGGGCGAGATCTCTCCGACGATTAC
GGTACTTCGAAGCAATTGGGAAGTACTTCGAAGGTGCTTCGAAGTATTGA
CTGTAGGGTAGGTGAGCAAGCGAGTTCTGACCCGTCCCACGAAAGGGTAT
AATCTAGTACTCATGTGTTTGTTCTCGATCGACAATCTCTTTGGGATCTT
CGGTGCTATGGGGTGTAATGAACACGCCGAGCAAGGTCACGTCACTAATT
ACCTCAACAGTGGCACTGTAAATGTATGGTACATTGTACAGTATGTACTC
ACATTGTGCTTGCCCTAGTCCTGAGGTCATTGACCTCTGATGCCACGACG
AACACTCTGACGTACTTGCCGCACGCGCTCGCAGGACGCGGGAAGCATCG
CCGCCCTCTGCCTCATCGGCACGCTTGCGGCGCTGGCGCTCGCCGGAACT
GCAGCGGTGGAGGTGAAACAACGG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig9:830625..834048- >mRNA_S-ischiensis_contig9.20502.1 ID=mRNA_S-ischiensis_contig9.20502.1|Name=mRNA_S-ischiensis_contig9.20502.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1374bp|location=Sequence derived from alignment at S-ischiensis_contig9:830625..834048- (Schizocladia ischiensis KU_0333)
ATGCCGTGGGGAGGAGGGCTTGCCGGGGCAAAGCTGCCAATACTGTTGGC
ATTGATTCTTCCAGGGAGGGGCGATGCCGTCCCCGCCTGCTCGACGCTGT
GCCAGGGGGCGTTCGCCGCAGGGCTCCTGCCGGCCTCCATGATGCAGGCC
GATTGCCAGAGCGTGTGCGAGGCCCTTGCGTTGGACTTGAGAGCTAACCC
TTGCGCTGTGGCTGTAGCGGATCTCGTGGACCATCCTGACCGTGCTGCGG
AGATGGCGTTTAGCAGCGGAAACGTCGGCTCGGCGCTAGGGCTCCTTCTG
CTCGCTGGAAATGGATGCCGTGGGGAGGAGGGCTTGCCGGGGCAAAGCTG
CCAATACTGTTGGCATTGATTCTTCCAGGGAGGGGCGATGCCGTCCCCGC
CTGCTCGACGCTGTGCCAGGGGGCGTTCGCCGCAGGGCTCCTGCCGGCCT
CCATGATGCAGGCCGATTGCCAGAGCGTGTGCGAGGCCCTTGCGTTGGAC
TTGAGAGCTAACCCTTGCGCTGTGGCTGTAGCGGATCTCGTGGACCATCC
TGACCGTGCTGCGGAGATGGCGTTTAGCAGCGGAAACGTCGGCTCGGCGC
TAGGGCTCCTTCTGCTCGCTGGAAATGGGTCGGCGGAGGCCACGGCCTTC
GTATCCGGGCTGCACCTGAACGACCCCGGCTCCCCCGACGCCTGCGAGGC
GGTGGAGGGCGCGCACTACTGCCTGGCCTCCGCTTCCTTGGCCATCAGTC
TGGGTCGGCGGAGGCCACGGCCTTCGTATCCGGGCTGCACCTGAACGACC
CCGGCTCCCCCGACGCCTGCGAGGCGGTGGAGGGCGCGCACTACTGCCTG
GCCTCCGCTTCCTTGGCCATCAGTCTGGGCGTGTGCCTCCCGCGCGAGTG
CGACGAGGCCACCGCCCTCCAGCTTATACAAAACTTCACCTCTCCTGCCG
ACGCCACGGACGGGTATGCTGGCGCCACCCCCGCCGGCCCCGCCCCGGCT
CAGGTCTTGTGCGTCGACGGCCGGGCCTTCTCTCAGGCGTGTGCCTCCCG
CGCGAGTGCGACGAGGCCACCGCCCTCCAGCTTATACAAAACTTCACCTC
TCCTGCCGACGCCACGGACGGGTATGCTGGCGCCACCCCCGCCGGCCCCG
CCCCGGCTCAGGTCTTGTGCGTCGACGGCCGGGCCTTCTCTCAGGACGCG
GGAAGCATCGCCGCCCTCTGCCTCATCGGCACGCTTGCGGCGCTGGCGCT
CGCCGGAACTGCAGCGGTGGAGGTGAAACAACGGGACGCGGGAAGCATCG
CCGCCCTCTGCCTCATCGGCACGCTTGCGGCGCTGGCGCTCGCCGGAACT
GCAGCGGTGGAGGTGAAACAACGG back to top
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