mRNA_S-ischiensis_contig9.20500.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20500.1
Unique NamemRNA_S-ischiensis_contig9.20500.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:800459..802154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size501
Cds size498
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817364.6778193-CDS-S-ischiensis_contig9:800458..8004821622817364.6778193-CDS-S-ischiensis_contig9:800458..800482Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 800459..800482 +
1695741059.1075783-CDS-S-ischiensis_contig9:800458..8004821695741059.1075783-CDS-S-ischiensis_contig9:800458..800482Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 800459..800482 +
1622817364.692126-CDS-S-ischiensis_contig9:801678..8021521622817364.692126-CDS-S-ischiensis_contig9:801678..802152Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 801679..802152 +
1695741059.1180813-CDS-S-ischiensis_contig9:801678..8021521695741059.1180813-CDS-S-ischiensis_contig9:801678..802152Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 801679..802152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20500.1prot_S-ischiensis_contig9.20500.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 800459..802152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20500.1

>prot_S-ischiensis_contig9.20500.1 ID=prot_S-ischiensis_contig9.20500.1|Name=mRNA_S-ischiensis_contig9.20500.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=166bp
TVGSTPTQPISPGPTSRPMLPRRNSDRGPEPATRGLEPSSPPPPTMGRRR
HWSSAPVSPPSLLPGQRPRPPAGAPPTAPAPSAYPSASSTSSSPGLPTGQ
ASVGAAVTTAPVVVGHGLDAANEARGHGGGGGHGSDPGGARRLQTGGGGD
GRSSRWGDSGWVGAVL
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mRNA from alignment at S-ischiensis_contig9:800459..802154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20500.1 ID=mRNA_S-ischiensis_contig9.20500.1|Name=mRNA_S-ischiensis_contig9.20500.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1696bp|location=Sequence derived from alignment at S-ischiensis_contig9:800459..802154+ (Schizocladia ischiensis KU_0333)
ACTGTGGGCAGCACGCCAACACAGGTGTGGATTGGGACTGGGACCGTAGA
GTTCTGCGTTAATGCCGAAAATCGTTAATATCCATTGTTCAATAATTCCA
GCGATTTTCAATCAATAGTCAATCAAGGTTGTTGGGACGGGGCCCGGAAC
TCGCTCGCATGCCATGGAAATAATTTAAAATCAAAACCAATACATATTTC
ATGCCAATGATCGATCCATATTTTTATCAATGCCGAACTCTACGGGACCG
GGACCAGGGCCGGGACCGGGACCGGACCGGGACTGTGGGGGAAGGGATGG
GAGACCTGTCTCTGTGCTCTTTGGTCCGGAAGCACAGTAGACTAAGTCTG
TTTTTGTCTCGAGGCGCGATGGGGAAGGGGGGgcGGGGCCGAGCCGGTCT
GGGGCCGATGGTTGTGGTGTGACGTTTTGTGATTGGTGTGCGGTCAAACT
ATGCAGAGTACTGGCTTTAGGAGTGCAAATCGTATCACGTGGCACGCGAT
GTGGTGTTACGTGACGTGCTGCGATGCCAGGCTGACGTGTAGTTCTGTTG
ATTAGTCTGGATGGCTCGCGAGTTCCGGTCCGGTCCCTGATGTATTTCAG
ACCCCAAATCGTATACTATCGCGTGGCTTCCCCGGTATCGTCCCGGGGGC
CTCGGCCCCAAGCAAGTCTCACTCCATCTTCATTGATTGGCCGTTACCGT
AGTCATCGGAGAGATTTTGCCCCCACGGGACAATCTTCGGGGGAATGTTT
CTAGCCGGGAAGGTCCTGAATTGTCCCTAGAACTCTTGGAAAAGTTCCCC
CAGGTCCTGAGAGAGATTTTCCGAGTTTTCCTGCACGAATCCGACCAGTA
CTCGGCGAGAAAGTTCTCCCGAAAAAGGGCATGGGGGGCAAGATCTCTCC
GACGATTACGGTACTTCAAGGGACAAAGGTACCTCGACTGCTTACACAAC
TAGGCAACCAAGGGGGCATGTACACTATTGGTAAAGTCTTGCTCGGCCTC
AAACCATTTTAATCCTGGGGTCCGTATAGTCAGGGTTTTAGTGTGTAAGT
CCAATTAGCCAGGGGAAAAAGGGTTAAGTACCATCGCAGCCAGGTGGTAT
CGCATTGCGTGCACTTGAGCCCACGCCGACCCCCATTCTTTCATCAACGG
CTCACCCCGTGACCAGCCAACCTTTGCACCCTCCTGCCCTCCTTCCCCCT
CGGTGCCCCCCCCCTGGCAGCCAATATCTCCGGGCCCAACGTCCCGCCCC
ATGCTACCCCGCCGCAACTCCGACCGCGGCCCGGAGCCTGCCACCCGGGG
CCTGGAGCCGTCGTCCCCCCCTCCTCCCACCATGGGGAGGCGTCGCCACT
GGTCTTCTGCGCCCGTGTCGCCGCCGTCTTTGCTGCCGGGCCAGCGGCCG
CGGCCGCCGGCGGGGGCACCCCCGACAGCACCGGCACCATCCGCTTACCC
AAGCGCATCTTCGACTTCGTCTTCCCCGGGCCTTCCAACGGGTCAGGCGT
CCGTGGGTGCCGCCGTCACCACCGCCCCCGTCGTCGTGGGGCACGGACTA
GACGCAGCAAACGAGGCCCGGGGCCACGGCGGCGGCGGCGGCCACGGCAG
TGACCCCGGGGGTGCGCGAAGGCTGCAGACAGGAGGCGGCGGTGATGGCC
GGTCATCGCGGTGGGGAGACAGTGGCTGGGTGGGCGCGGTGCTGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:800459..802154+

>mRNA_S-ischiensis_contig9.20500.1 ID=mRNA_S-ischiensis_contig9.20500.1|Name=mRNA_S-ischiensis_contig9.20500.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=996bp|location=Sequence derived from alignment at S-ischiensis_contig9:800459..802154+ (Schizocladia ischiensis KU_0333)
ACTGTGGGCAGCACGCCAACACAGACTGTGGGCAGCACGCCAACACAGCC
AATATCTCCGGGCCCAACGTCCCGCCCCATGCTACCCCGCCGCAACTCCG
ACCGCGGCCCGGAGCCTGCCACCCGGGGCCTGGAGCCGTCGTCCCCCCCT
CCTCCCACCATGGGGAGGCGTCGCCACTGGTCTTCTGCGCCCGTGTCGCC
GCCGTCTTTGCTGCCGGGCCAGCGGCCGCGGCCGCCGGCGGGGGCACCCC
CGACAGCACCGGCACCATCCGCTTACCCAAGCGCATCTTCGACTTCGTCT
TCCCCGGGCCTTCCAACGGGTCAGGCGTCCGTGGGTGCCGCCGTCACCAC
CGCCCCCGTCGTCGTGGGGCACGGACTAGACGCAGCAAACGAGGCCCGGG
GCCACGGCGGCGGCGGCGGCCACGGCAGTGACCCCGGGGGTGCGCGAAGG
CTGCAGACAGGAGGCGGCGGTGATGGCCGGTCATCGCGGTGGGGAGACAG
TGGCTGGGTGGGCGCGGTGCTGCCAATATCTCCGGGCCCAACGTCCCGCC
CCATGCTACCCCGCCGCAACTCCGACCGCGGCCCGGAGCCTGCCACCCGG
GGCCTGGAGCCGTCGTCCCCCCCTCCTCCCACCATGGGGAGGCGTCGCCA
CTGGTCTTCTGCGCCCGTGTCGCCGCCGTCTTTGCTGCCGGGCCAGCGGC
CGCGGCCGCCGGCGGGGGCACCCCCGACAGCACCGGCACCATCCGCTTAC
CCAAGCGCATCTTCGACTTCGTCTTCCCCGGGCCTTCCAACGGGTCAGGC
GTCCGTGGGTGCCGCCGTCACCACCGCCCCCGTCGTCGTGGGGCACGGAC
TAGACGCAGCAAACGAGGCCCGGGGCCACGGCGGCGGCGGCGGCCACGGC
AGTGACCCCGGGGGTGCGCGAAGGCTGCAGACAGGAGGCGGCGGTGATGG
CCGGTCATCGCGGTGGGGAGACAGTGGCTGGGTGGGCGCGGTGCTG
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