mRNA_S-ischiensis_contig9.20498.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20498.1
Unique NamemRNA_S-ischiensis_contig9.20498.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:781610..788720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size462
Cds size459
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20498.1prot_S-ischiensis_contig9.20498.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 781612..788720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817364.6186182-CDS-S-ischiensis_contig9:781611..7816971622817364.6186182-CDS-S-ischiensis_contig9:781611..781697Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 781612..781697 -
1695741059.076898-CDS-S-ischiensis_contig9:781611..7816971695741059.076898-CDS-S-ischiensis_contig9:781611..781697Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 781612..781697 -
1622817364.6314356-CDS-S-ischiensis_contig9:783641..7837381622817364.6314356-CDS-S-ischiensis_contig9:783641..783738Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 783642..783738 -
1695741059.08585-CDS-S-ischiensis_contig9:783641..7837381695741059.08585-CDS-S-ischiensis_contig9:783641..783738Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 783642..783738 -
1622817364.6432633-CDS-S-ischiensis_contig9:788444..7887201622817364.6432633-CDS-S-ischiensis_contig9:788444..788720Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 788445..788720 -
1695741059.0975144-CDS-S-ischiensis_contig9:788444..7887201695741059.0975144-CDS-S-ischiensis_contig9:788444..788720Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 788445..788720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20498.1

>prot_S-ischiensis_contig9.20498.1 ID=prot_S-ischiensis_contig9.20498.1|Name=mRNA_S-ischiensis_contig9.20498.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=153bp
AVEQPGTRGRGIRGRGCLQEFDMQDSADAGSSEPQQQIDVGGSVLGAISL
AVFVCFFVVLRVTICRGRRGQVEISSGGGGQGISGGTRSTFKAFTYSSKT
PSGRDRRDILHGGGAITPSLSWIPRDDLEEPPRAPPTGAQSMPRGLAPPA
PPP
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mRNA from alignment at S-ischiensis_contig9:781610..788720-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20498.1 ID=mRNA_S-ischiensis_contig9.20498.1|Name=mRNA_S-ischiensis_contig9.20498.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=7111bp|location=Sequence derived from alignment at S-ischiensis_contig9:781610..788720- (Schizocladia ischiensis KU_0333)
GCTGTTGAGCAGCCAGGCACTCGGGGAAGGGGCATCCGCGGTCGCGGATG
TCTGCAGGAGTTCGACATGCAAGACTCTGCCGATGCGGGGTCATCAGAAC
CCCAACAGCAGATCGACGTTGGTGGAAGCGTGCTCGGCGCGATTTCTCTG
GCGGTGTTCGTGTGTTTCTTCGTGGTGCTCAGAGTGACCATATGCAGAGG
GCGGCGGGGGCAAGTGGAGATATCCTCTGGCGGCGGTGGGCAAGGGATAT
CGGGCGGGACGAGGTCGACATTTAAGGTGAAGACGGAGAAGATTTACAGA
GTTCCCATAATCTCGATCTTTGGGATGTTGTCAAGGTGTACGAGTGCACG
TCTCGTACGTTTTATTCGACCTTTCTTATGGCTCGCCGGCCGGAGCCTCT
GTAGGCTGCCTGTCAACATGGGATGTACCAGGGAGCACTCTGTGGTAGCG
GTCATCATTGACGCCCAAAACTCGTCAATATCGATATATCAATACGTGCC
GGCATAGTAGATCAATATTAACACCACAACTTGCGTTCAATGATGTGCTT
CACAAACAATATGTCCGAAGTCTGGAGCACATACAACCGCCCCTAAGTAA
ATGTGTACGTATTGAGGCGCGTGGTCAATGGTCTCGGGACTACGGCAAGC
ACCACGTGAGTACACACACACACACACACACACACATATACTACGTAGTA
TATTGAATCGTCAGTACAGTACAAGTATTTATTGTTGGCGGCTGCATTTC
CACCCCAAGTAAGTTACCATTATTGGCCGGGTTTCCCCCACAATGCGGTT
TCCGGCTTCCTTGGCAAACCATGAAACGCTCGATTTCGGCGCGGAATTAT
CAATGGACTACAGCAAGACGCCCGTCAATTATCCATATGGCACAGAGACT
ACTAGTACTTAGAGTACAACACAAATTTCCCCTGGCTAGGTATCAGGAAG
GGCCACTGCTGAGGTCCCTAGTGACGTGGCCCGCACCCCGCCCCGTGTTG
TTCCTGTTAATGTATGTATATGTATATATACTCACGTGGTGCTTGCCATA
GTCCCGAGACCATTGACCCTGCGCCTCGTGCGAGACGGAGCAGGACCCCT
CCCTCCCCTGGCAGAGCCAGGGTGGGAGGGGGTGGCCACCCCCCCGCCAG
AGGTGGAGGGGCGGCCAAGTCCATACCCCCCCCATCCCGGACTCGTGAGA
GTCCGGGTGGGGGGGGCCCTCCCCTGCTAGACCTAGGCCTAGCGGGCGAG
GGGGTTCCCTCGCCGTGCCGGGACACGGCGGGGGGAGATCCAAGATACCC
ATCTATGGTACCTACTCACTCCAACCGGGCACTCCACACCGACACAAGAA
AAGCTTTCACAGCACGCTCTATCCGACTCTGCCCCTCCTCTGGCCAACCA
GACGTCTCACCTGATGGGATCCAGGAGGGTGATGACCTGATGGCGAGGGG
TTGAGTTCCTAAAACATTTGTAAATATTTTCCGGAGGACGGCTTTGAGCG
CTGCGTGTAGGGCCACTCTGGCGGCATTGTATTGGGGGCACTCCATCATG
ACGTGACTAGCTGTCTCATCGTCTGATGGGCAGTTTGCGCACTTGGTGGT
CTGATCCCCGGCCTCCTGTGAAACCCCCACTGACCTGCCCGCCCGCACCG
GTATAGTTTCCGACCTAAACAGAAACATGAGACGGGTTCCATAATCGGGC
TGCCCTCGCAGATATTTTTGATGAGACCCAGCTCCCGGGGCGGTGGTATC
ATCCGACCATACAGTGAATGTGCCTCTTCCGCTAGCAATGTATCCCGCTC
CTTTCGCTGCACGGCTTCCTCCATCACCTCAGCAAACTCCTGACGCGATT
CCTTGGCAAGCAGTGCGGACCTCATAACCTATGTATCCTCGTAGTCTCCG
TGAATAGTTCACGACTTCCACAGATCAGTCATATGAGTCGCCCAGACTAC
AGGGGGCCTGCCCTTCCGTGTCGACGGCCATACGGCCTTCGCCAGCTGGG
CTGGTAGTCGGTCGTTTTCCATATGTCGCAGATCGTAATCCCGCAAAAAC
TTCTTCAAGTCTCTGCGGGATTGTAGAGTCTCCAACCCTACGTCCCCTCG
GACAGCACAACTGGGTGTGCGCTTGCCACAGCCAAGCATATACTTCGCAG
CTCTATGCTGAACAGATTCGAGGGCGCTTGCGTGGTTTCCAGTGCCCTCC
CGTACTTCAGTTGCATACTCCAGTGACGGACGGGCTACGCTTTTGAAAAA
ATGTTCAGTTTCAGCCTAATAGTCACGGATTTATGCTTGAACAACCGGTA
CAATCGCCCCACCCGTGCCCTGCCCGTGCGACTCACCTTCGCACAGTTTG
TATCCCACTTACAGGAGCTATCGAAGTCCACCGCCAGATACGTGTACGTA
GAAACCTTGGGGATAGTGGCAGGGCCCCATTGATGAGGTTCCGTGCGCGG
CGGCTGCGCTTTCGCCTCTTCGTTGAACACTACGACTCCGCATTTGGGGG
GCATTTACTTGGAGACGCCATCGAAGGGTGTATTCCCGAATGGTGGAGAT
CTGTGTTTGCAAAAGTCACCGGTTGTAGCGGTGTCTACTCCATCATCGGC
AGAACGGAGGGCTGGTACCACTCCCTGGTTCGCCCCGTCAGGCGGGCCCG
GAATGGGCACTCCACCGCCTTCCGGCAGCGAGTCCCTCACGGTCTGCGGC
ATGTTGTTGATAAACACCGAAAACAATGTAGGCGACAGAGTATCCCCTTG
TGAGACCCCTTGGGTGATGGGGAAAAACTCCGAAAGCTCGCCGTCTAGTC
GCACCGCGTTCGATGTACACTCTGTGAGGTTGCGGATCATCCGCCACATC
TTACCCCTAACCCCACACTGCCACAGCTTATACCAAAGCCCATTTCGCCC
AACCGTATCATATGCTTTCTTGATGTCAAGGAAAAAGGCGTACGTAGGCT
TGCTATTGCGCTTACGACCCTGGACTAGCGCGCTTAGCGTGTAGATATGA
TCGACGCAGTTTGTACCCTGCCAGAATCCTGCCTGGCTCTCCACCAGCGC
CCCCTGCTCTTCCAAGACGGATACTAGGCGTGAATTCAACACTTTGCCAA
ACACTTTCCCAACGGTATTTAGCAGCGTGATCCCTCTATAGTTGCCAGGG
TCCGTGCGTGCACCCTTCTTGAAGAGGTTAACAATAGTACCCTCTCGCCA
CCGCGTCGGAGCATACTCTGTTATCCAGATCCAGTTGAAAAGAGCGGTCA
GCATACGAATTCCTCCTTCCCCTCCATACTTAAGCAATTCGTTGACTATG
CCATCTGTACCCGCAGCCTTATGGTTGGACAACTGAGCGATAGCGTGGTC
AATCTCGGCGGCCGAGAAATCGGACTGTAGTCGTTGGAACTCTGGTGCAC
CTATACCTGCCGCATCGCCCTGTCTAACCTTCCCATCTACAAAGGCATCG
ACCTGCGCCTTCCAGTCCGCATCAAAGGCATCATCTACAAGCGGCTGTCC
CAGCTTGATATAATGCTCCCGGAAAACCCTAATCTGCCCCTTGGTACCCG
TTTCAACTTTTCCATCCTCGCCGGCGAGACCGCTATGCCACCCGTTCCCC
CATTACCCGCCCACCCCAAGAGTTCGTTTACCTGCTGCCACATCTGCTTC
ATCCCCCCGGAAGGGTCCGCTTCCACTTTCTCACTGATGGCAGCCAAAAA
CCCCTCCTTCTGCTGCTTGACCAGGGCCTTGACCGCCCAACGCTTAACCT
TGTACTCTGCCCACTTCTCTACAGCATCTGCCCTTTTACACTTTATGTAC
TCGACGTGGGTACTGCGCCGGTCCTTGACTGCCTGCCTGAACTCCGCATT
CCACCAACTCTTTGCACGCCTACAGTCAATCCTCTTCTGACCCAATACTT
CCTGCGCTGCCTCCCGCACACAAGCCTCCCACTTCTCGACTAGCCTCTGC
CCTTTGCCGTCGCTATCAGCCCCTCCGTTATCCAGTCCTTCTACAAAGGT
ACAAAAGGCCTCACTTTGTTTCTGCATCTGCGCTTCAAAAGCCTCTCTGA
CCTCTTGCTTCTGCAACTTGTCTACTCTCCAACGGAGAATACGGCGGACC
TTCTTCCGCCTCACCCCCCTCCTGGGCCCATCTACATCAGTCCAAACCGC
AAAATGATCCGAAGACCCGATATCAAAACTATCTACACGGACTCGACACT
TCTGCAGCATGGTGGCACTGACGAGAACATAGTCTAGGGCTGATTGTTCA
CCCCGTTGCGGCCGTGCTCGCGTGGGCGTCCATCCGAGGGGGGGGGTTAC
AGGAACCTGTGCACCATGGGTAATCGAGTTCCGCTGTCGCCCACGGTTAT
TTACCGCCGAGTGGCTAAGGCTGGGAGGGGTGGCGCCCAAGGGGCTAGAT
GAGGAGCGCTCCCGACCGTTCGCGGCGAAAAGACCAGTGCTGTGTAGAAA
AGCTTCATCTTGTCCCCATGAATATTCCTAGAGTCCTCTCCAAACTGTCC
TATCACATCACCAGGCAACTCCGCGCAACCTACCCTAGCATTAAAGTCCC
CTACCAAAACTACCTCCCCGAGGTCTTGGAACCTACCTACATCGCCTGCC
AGATTGTCAAACCGTTCTGTCACATGCGCTATCTGGGTACCAACGCAGGG
CATATACACATTCCCAATATACAAATCCCGCCTAGCCCTATCCCCTGGGG
CCTTCAACCACATACTCTCAAGGCATGTTTGGTCCTTGCTATCTACAGGT
TCCACGTGGTCAGCCATACCTTTAATACTAGTAATAATCCTGCTCTGTCT
CGAACGAGGCGCTTGGTCAACGGTCTCGGGACTACGGCAAGCACCACGTG
AGTACATATATATATATACTACTGCAGTAGCGATTGTGTCAACACCAATG
ATAACCTCCACGCTGTGCGCCGCGTGTTCAACAAAGGATTTGTCATCTGA
CCGCCGCTCCCCCCCGCCGCCGCCGCTGCCAGGCTTTCACATACTCTTCC
AAGACGCCATCTGGACGGGATCGCCGAGATATTTTACACGGGGGTGGAGC
CATCACCCCGTCCCTGAGCTGGATTCCAAGTGAGCCGGGGCGGGGGACGT
TGGGCCCAGGGTTGGCACTTAGAGGTTAATTCGGGCCAAACTAGCCTTCG
TGTTAGGTCTAATTACCCCTAATTAGCCATCGCCCCGGCCCTGAGCTGGA
TTCTAAGTGAGCTGGGGCGGGGGACGTTGGGCCCAGGGTTGGCACTTAGA
GGTTAGTTAGGGCCGAATTAGCCTTTGTTTTAGGTCTAATTACCCCTAAT
TAGCCATCGCCCCGTCCCTGAGCTGGATTCCAAGTGAGCGGGGCGGGGGT
GATTCATATATATTGTAGCCCGCATGCCCCACTGTGAGCACAAGAGACTC
CCCTTCCCCGCCCCTTTCCTGCTTTATTTTTTGTTTTATTCTTGCCCTGC
GCGGGAAGGAAGGGCTTCGTTGAGTCCCGTTTCGGGACGCGCCTTTTGGC
ACGGGGCCTGGAACTCGCTGCTGATCCCTTCCTCAAATAAATTGTATCGA
GGTACAATCGCACGTGGGTGAGATTGACTGTTCTCGTATGAGCTGGGGCG
GGGGACATCGGGCCTCTTGTCTCCGCTATGCGAGTGTGTGGGTGTGGGTG
TGATTTGTATAAATTGTAGCCAGGTACCATCGCACGTGGTGAGATTGACT
GTTCTCGTATTAGTAGTTGTCCCGTTTAAGAATCGAGTGTTCTCGTATTT
GTGATTGTCACGTATGGAACTAAGAACAAGGAAGGGGGGAAACAAAGGGG
GGGGGGAAGGGAACAGAGAAGAAAAAGAAGAAAACCCAAGCAGAAACAGG
AGGGGGTTGGGTGGGAGTTTTGGGCCTCTTGTGTCCTCTGTGCGAGTGTG
TGGGTGTGGGTGTAGGTGTGTGCGTGTGCTTCCTCACTCCAGCTAGCGTC
CTGTGTTGATAAAAGAAATTGATCGCCCATATTGAATACATAGTGGATAG
TGATGTGGACGATTTCGGAGTCAATAGTGATATCGACGATTTTCGGAGTC
GAACGAGGCGCGGGGTCAATGGTCTCGGGACTACGGCAAGCACAACGTGA
TATATATATAGTGATATTGACGATTTTCGTATTCAATACAGAACTCTAAC
TTCGGCATGCCTTGCCGTGTCCTTAGGCTAACTTGATGCCATTGGAACCC
CCGAGGAGGAAGAGCAGGAACCGTCCGAGCTTAGCCCTTTTGCCCCTGCT
GAATTGGACTTGCGCACTTAAAATCCTATGATTACACGGACCACAGGGGT
ACAAGGGTTAGCTTCAGATGTAGGGCTGTGAACCGGGGCCGTTATTTTCC
GGGCAGTTCCAGGTACCCAGTGACCGGTTGATCCGGCCGAAGCTAGCACC
CCCCCCTCCCCCCCCCCCGCTCTCCTTCTCCCTTGAAATTGTGCGCGTTT
ATTTTTGATTTGCAGTTTATGATGCAGCGTTACGCATGAAACAGGCCTCA
AAAACTGTTAAGTAGGGGCTCAACCCGGAACAGCGAGAAAACGTGGCGCG
AACGGGCGCATCAACCGGTCGCAACAACATATCCGGTACACGACCGAACC
GCGCCCGCCGGCCTCATGACCGGTTACTGATGGCTACCCTCCGCTGCTAC
TTAGCCGCTGCCGGGCTGTGTGCCGCCCGCCAACTCTAGTGGCACACCCG
TAAGCACATGGCATTGGACAAACTGATTGAAAACCCTTGTTTTTTTTTCT
TCTTTGATGTGGTAGCCACTAATACAGGAAGAGTCAATCCTTATATAGGG
TAACCGTCAATACGAGAACGCTCATCCTCGCGCACGTGCGATCGTGCTCA
AGTACCTGGTTACAATTCATATGAATCAACGCCCTCGTCGCGTTCGTGCA
TGCGTGCGTGCGCATACGAGAACACTCAATCTCGCACGCGTGCGATTGTA
CCTCGCTACAATTGACATGAATCAACACCCTTGTCGCGGTCGTGCGTGCG
TGCGTGCGTGCGTGCGTGCGCAGGAGACGACCTGGAAGAACCGCCGCGGG
CGCCACCCACGGGGGCCCAGAGCATGCCGAGAGGGCTGGCGCCGCCCGCG
CCCCCCCCCCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:781610..788720-

>mRNA_S-ischiensis_contig9.20498.1 ID=mRNA_S-ischiensis_contig9.20498.1|Name=mRNA_S-ischiensis_contig9.20498.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=918bp|location=Sequence derived from alignment at S-ischiensis_contig9:781610..788720- (Schizocladia ischiensis KU_0333)
GCTGTTGAGCAGCCAGGCACTCGGGGAAGGGGCATCCGCGGTCGCGGATG
TCTGCAGGAGTTCGACATGCAAGACTCTGCCGATGCGGGGTCATCAGAAC
CCCAACAGCAGATCGACGTTGGTGGAAGCGTGCTCGGCGCGATTTCTCTG
GCGGTGTTCGTGTGTTTCTTCGTGGTGCTCAGAGTGACCATATGCAGAGG
GCGGCGGGGGCAAGTGGAGATATCCTCTGGCGGCGGTGGGCAAGGGATAT
CGGGCGGGACGAGGTCGACATTTAAGGCTGTTGAGCAGCCAGGCACTCGG
GGAAGGGGCATCCGCGGTCGCGGATGTCTGCAGGAGTTCGACATGCAAGA
CTCTGCCGATGCGGGGTCATCAGAACCCCAACAGCAGATCGACGTTGGTG
GAAGCGTGCTCGGCGCGATTTCTCTGGCGGTGTTCGTGTGTTTCTTCGTG
GTGCTCAGAGTGACCATATGCAGAGGGCGGCGGGGGCAAGTGGAGATATC
CTCTGGCGGCGGTGGGCAAGGGATATCGGGCGGGACGAGGTCGACATTTA
AGGCTTTCACATACTCTTCCAAGACGCCATCTGGACGGGATCGCCGAGAT
ATTTTACACGGGGGTGGAGCCATCACCCCGTCCCTGAGCTGGATTCCAAG
CTTTCACATACTCTTCCAAGACGCCATCTGGACGGGATCGCCGAGATATT
TTACACGGGGGTGGAGCCATCACCCCGTCCCTGAGCTGGATTCCAAGAGA
CGACCTGGAAGAACCGCCGCGGGCGCCACCCACGGGGGCCCAGAGCATGC
CGAGAGGGCTGGCGCCGCCCGCGCCCCCCCCCGAGACGACCTGGAAGAAC
CGCCGCGGGCGCCACCCACGGGGGCCCAGAGCATGCCGAGAGGGCTGGCG
CCGCCCGCGCCCCCCCCC
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