mRNA_S-ischiensis_contig9.20496.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20496.1
Unique NamemRNA_S-ischiensis_contig9.20496.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:768693..772697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size785
Cds size783
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20496.1prot_S-ischiensis_contig9.20496.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 768693..772695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817364.5689304-CDS-S-ischiensis_contig9:768692..7689471622817364.5689304-CDS-S-ischiensis_contig9:768692..768947Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 768693..768947 +
1695741059.0267727-CDS-S-ischiensis_contig9:768692..7689471695741059.0267727-CDS-S-ischiensis_contig9:768692..768947Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 768693..768947 +
1622817364.57963-CDS-S-ischiensis_contig9:771432..7715951622817364.57963-CDS-S-ischiensis_contig9:771432..771595Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 771433..771595 +
1695741059.0570087-CDS-S-ischiensis_contig9:771432..7715951695741059.0570087-CDS-S-ischiensis_contig9:771432..771595Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 771433..771595 +
1622817364.590074-CDS-S-ischiensis_contig9:772330..7726951622817364.590074-CDS-S-ischiensis_contig9:772330..772695Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 772331..772695 +
1695741059.0676277-CDS-S-ischiensis_contig9:772330..7726951695741059.0676277-CDS-S-ischiensis_contig9:772330..772695Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 772331..772695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20496.1

>prot_S-ischiensis_contig9.20496.1 ID=prot_S-ischiensis_contig9.20496.1|Name=mRNA_S-ischiensis_contig9.20496.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=261bp
PGRREERNRAWEGLRVHMATHVRPVVVMHPPQQQDAGQGCCYDIDDFRDP
PSLRRARRWGVSLILTEVLVVLFPGMLVVFIPVLLVMISSSIVVCCSKEH
HSWRAHGVACLTGTALHVACVVLGAILAPEFFVSWALNAFAAMECAIAAE
LARAVSKEYRSGALARPGGGNTHPDTLAAVPRPIPAVHPHQVGGVPAAYV
AYIQPGEDGGGATGTRAIPVAAYPVYVQPGTGVPGGGGGQLGGAGGGTAA
TPAAAGMPLVP
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mRNA from alignment at S-ischiensis_contig9:768693..772697+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20496.1 ID=mRNA_S-ischiensis_contig9.20496.1|Name=mRNA_S-ischiensis_contig9.20496.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4005bp|location=Sequence derived from alignment at S-ischiensis_contig9:768693..772697+ (Schizocladia ischiensis KU_0333)
CCTGGGCGGCGAGAGGAACGGAACCGGGCCTGGGAGGGCCTGCGTGTGCA
CATGGCAACGCATGTACGCCCTGTGGTGGTCATGCACCCTCCCCAACAGC
AAGACGCGGGGCAGGGATGCTGCTATGATATTGACGATTTCCGGGACCCG
CCTTCGCTGAGGAGGGCGCGCCGGTGGGGAGTGTCGCTCATCCTGACGGA
AGTGCTCGTTGTCCTGTTCCCTGGCATGCTGGTGGTGTTCATCCCCGTTT
TGCTGGTAAGTAGCTGGAATACCTCACCACAGCCGATTACGCGTGTTTCT
TATGTTGTTGCAGGAGTCCGGTTGGCTCCCCTTGGCGGGAACCGTTTCCA
CCGAACCCGTCACGAAACGGTGCAGCGCAAAGCGACCGCCCCCCTCTGTG
TCCAGCATCAGAAGTCCTTCCAACAATGTTCCACCACTGCAGGCGTCCCA
AGGGTCGGTAGCGGTGTTGCTGAGGAGGTGCAGCATGCATTTACGACTTT
GGGTCTGGAGACGTTGCCTGCTCTCTGCCCGTCACTCCAAAAAGCAAGGC
ATTGACTTGCCCGCCTCACCGAATAGAGACAGGGAGTATCCGCTCGTGAG
AATATTCTTGGGTCAAGAGTCGAGTGCACTGAAGGTGTGCGGGTATGACA
GCACACGTTCAGTTTTCTGTCATGGGTGGCCAATTGAGCTAACGCAAGTT
CAAGTTTCGCGGCATTAACGTGCACTATTGTACACCGGGATGCGAAAACG
AAAAATTCCAGCACGCAGTTTTCGGTTCGGCCGTTGAAATCTCCGTGGTG
ACTACCCGTGCATGGCGCCCGAGTGGGCAGCTTAGCCCTTCCCTTGCGGT
GCGCTGGCCACTCATCATGTACTTTTTGTCTACTACAGTAGTAGTTCAAG
CAACCCAACTACAGTTGTCTCCTCTCCAAGGAGGTGAGAACCCGGTTTGC
TCCTTCCCGGCCTAGTAGGGACGCGAGGCCAATGGACGAACGGCTACGTA
CCCTGTGGGGGGCGGCCGGCGGGCCGCGGTGTCCCGCGGGGGGTGTTTTA
CTATGGGTTGGTGGGCCCCGACGACCGGAGGCATGCACGGGACGGACTGA
TGTGGTGTGATGTGATGTGATATGTACTCTAGTTTGCTGTAGTTTGACAT
CATATCACATCAAATCCCATCGGCGGTTGGTGGGCCCCGACGACCGGAGG
CATGCACGGGATGGGGTAGTACAGTAGTACTATGTGTCCATATGGGTACA
CACACACACACACACACATGCACACACACAGAATTCTCCCGTTGTCATGT
GGGAGACCCTACTACTGTAGAGCTCTACTGTAGTACCGCCGGAAGTGCTT
GGAAGTACTGCAGTACCTACTCTGCTGCACAGGTCAATGGTCTCGGGACT
ACGGCAAGCACCACGTGAGTACTTATATATATACTGCACAAAGTGCCTTT
ATATGTACTTCGTACTTCCGGAAGTACTTCGAAGTACATGCACTCATTGG
CTTGTGTTCCGACGTAGGCTTGCACATGCGTTGCCGACAACCCTACTGTG
TGTCGAAAGTGTGTTCACAGCAAGTACTTCGAAGTGCAGTAAGTAGCAGA
GTGCCGGTATGTACACACGGCAGCGGGTACAAGTACACCGCCCCGATCCA
TCCGCTATCAACGCCGACAGGGGCTCGGCGGGCACCCCAGGGATGGAATA
TCTAAGCAATTCAACCTATTTATCGATAGTACTGATCTATTTTGAGTGGT
AGATAAGCGGTAAGTTCCAGGCCCCTTGCCAAACGGCTCGTCCCGAAACT
CAGCGAAGCACGTCTTCCCCTCGCAGGGCAAAAAGAAAACAAAAATAAAG
AAGCAACTGGGCGGGGCAGGGAAAAGCAAGGGGCGGGGAAGGGGAGTCTC
TTGTGCTCTACATATCTATCGATAGTCAATATTCGATAGTTTGACCCACA
CTAGATCCAAGTAGTTAGTAGCGCCACCCACATAATCAGTCGAGCCCGAT
AGCTATCTACTGATCGATATTCCATCACTGCCGCCCGAAACGTGTCGATT
CGCCCGCCCCCGCTTGCCAAGTACACATCACATCACATCACATCACGAAA
GGACGGTTAAATCTCCTGGGGAGGTCCCAAACTTGGTGCGATGCGATGTG
TGATGCTATGTTATGTGATGTGATGTGCTGCAGCAAATTAGAGCAGATTA
GAGTTCGACATCACATCACATCACATTACATCGCATCGCTTCACGAAAGA
AGGGCCATCTCTCCTGGGGAAATCCTAAGTCTAGGGATGGGGCCCGGAAC
TCGCGCGCCGTCACAACAGTAAATAAATAAATAAGTTGCACGGATCCTCC
CCTCGCCCTCCTCACGCTCAGCTCCAACCATGGTACAAAAGTGCGATTTT
TTTGCCAAAATAGTTTTATCATCGAATATCCATTGACCTGTTTGCTCGGT
CCATGTGATGGTGTGATACGAAAACTATAGTATAGCGCAAATGAACGTAC
TCATCGAGCTTTTTCATGCGTCAAAACTAAACGGTCATTCATCCGATGCG
TCCCTCGTAGGGCGGCCCGGGCCCCAAAAATAATAGCGATCGCACTTTTG
TACCATGGTTACGCAGCTCCCTGTCCCCTCTTTTTTGTGTAGAAAGAACA
GAAGCGAGTGGAAAATAGAGGTGAACCTACTTTCGCGAGTTCCGGGCCCC
AACACGAAAGCTTTTTTGTTGTTGCCCGTGCTTCCCCCAGGTCATGATCA
GCTCCTCCATCGTGGTCTGCTGCTCAAAGGAACATCATAGCTGGCGCGCC
CACGGCGTTGCTTGCCTCACAGGGACTGCCCTTCACGTTGCCTGCGTCGT
CCTCGGGGCTATATTGGCACCCGAGTTTTTCGTCTCCTGGGCGCTCAACG
CGTGTGAGTGTGTGTGTGTGCACGTGCGTGTGCGTGTGCATGCGTAGATA
TGTGTGCGCGGGTGAATGCCCGAACGCGCTTACCCAGACGTACAAACGTC
CCATGCACAGACCTCTGTGCGCGGGGAGTCTCTGTTCAGTAGCGAACCAC
GTTAATCCCTCTCCTGCCCTCCCCCGCTCCCTCCCCTCccctCCCTCCCC
CCCCTCCCCTGGCTTCCCCTCCCTTCCCCTCACTCCCTCCCCCTCCCATC
CCCCCTCCGCTCCCCTCCGCTCCCCTCCTCCCCTCCCTCCCTTCCCCACA
TCCCCCCCTCCCCCAACCCCCCTGCTCCCCTCCCCTCCCCCTCTCTTCCC
CGTCGCCCCCTCCCTTCCTCCCCTCCCCTCCCTCCGCCAGTTATGGAATG
TCTAGGCAAATCAACCTATTATCGACAGTACTGTCTATTTGAGTGGCAGA
AAACCGGCGATATATCTACCGACAGTCGATATTCGATTGTTTGACCCACA
CTAAATCCGAGTATTGCTTAGCAGGAACAACACGGGGCGAGGTGCGGGCC
ACGTCACTAAAGATCGAGGAAGTAGTTAGTAGCACCACGCACAAAGCAGT
CGAGCCCGACAACCATCTATGTTGATGTGGTGTGATGTGATGTGATGTGA
TGTCAACCTACAGTAAATGAGAGTGCACATCACATCACATCACATCATTG
CTGATCGCTATTCCATCCCTGCCCTCCGCTGACAACAGTCGCCGCCATGG
AGTGCGCCATCGCCGCCGAGCTTGCACGTGCCGTCTCCAAAGAGTACCGC
TCGGGAGCCTTGGCCCGCCCCGGCGGCGGCAACACCCACCCCGACACCTT
AGCCGCCGTGCCCCGGCCCATCCCCGCCGTACACCCCCACCAAGTCGGCG
GCGTCCCCGCCGCGTACGTCGCCTACATCCAGCCCGGCGAGGACGGCGGC
GGGGCCACCGGCACCCGGGCCATCCCCGTCGCCGCCTACCCGGTGTACGT
CCAGCCCGGCACAGGCGTCCCTGGAGGCGGCGGCGGTCAGTTGGGTGGGG
CAGGGGGGGGGACAGCCGCCACCCCCGCCGCCGCCGGGATGCCCCTTGTC
CCGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:768693..772697+

>mRNA_S-ischiensis_contig9.20496.1 ID=mRNA_S-ischiensis_contig9.20496.1|Name=mRNA_S-ischiensis_contig9.20496.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1566bp|location=Sequence derived from alignment at S-ischiensis_contig9:768693..772697+ (Schizocladia ischiensis KU_0333)
CCTGGGCGGCGAGAGGAACGGAACCGGGCCTGGGAGGGCCTGCGTGTGCA
CATGGCAACGCATGTACGCCCTGTGGTGGTCATGCACCCTCCCCAACAGC
AAGACGCGGGGCAGGGATGCTGCTATGATATTGACGATTTCCGGGACCCG
CCTTCGCTGAGGAGGGCGCGCCGGTGGGGAGTGTCGCTCATCCTGACGGA
AGTGCTCGTTGTCCTGTTCCCTGGCATGCTGGTGGTGTTCATCCCCGTTT
TGCTGCCTGGGCGGCGAGAGGAACGGAACCGGGCCTGGGAGGGCCTGCGT
GTGCACATGGCAACGCATGTACGCCCTGTGGTGGTCATGCACCCTCCCCA
ACAGCAAGACGCGGGGCAGGGATGCTGCTATGATATTGACGATTTCCGGG
ACCCGCCTTCGCTGAGGAGGGCGCGCCGGTGGGGAGTGTCGCTCATCCTG
ACGGAAGTGCTCGTTGTCCTGTTCCCTGGCATGCTGGTGGTGTTCATCCC
CGTTTTGCTGGTCATGATCAGCTCCTCCATCGTGGTCTGCTGCTCAAAGG
AACATCATAGCTGGCGCGCCCACGGCGTTGCTTGCCTCACAGGGACTGCC
CTTCACGTTGCCTGCGTCGTCCTCGGGGCTATATTGGCACCCGAGTTTTT
CGTCTCCTGGGCGCTCAACGCGTGTCATGATCAGCTCCTCCATCGTGGTC
TGCTGCTCAAAGGAACATCATAGCTGGCGCGCCCACGGCGTTGCTTGCCT
CACAGGGACTGCCCTTCACGTTGCCTGCGTCGTCCTCGGGGCTATATTGG
CACCCGAGTTTTTCGTCTCCTGGGCGCTCAACGCGTTCGCCGCCATGGAG
TGCGCCATCGCCGCCGAGCTTGCACGTGCCGTCTCCAAAGAGTACCGCTC
GGGAGCCTTGGCCCGCCCCGGCGGCGGCAACACCCACCCCGACACCTTAG
CCGCCGTGCCCCGGCCCATCCCCGCCGTACACCCCCACCAAGTCGGCGGC
GTCCCCGCCGCGTACGTCGCCTACATCCAGCCCGGCGAGGACGGCGGCGG
GGCCACCGGCACCCGGGCCATCCCCGTCGCCGCCTACCCGGTGTACGTCC
AGCCCGGCACAGGCGTCCCTGGAGGCGGCGGCGGTCAGTTGGGTGGGGCA
GGGGGGGGGACAGCCGCCACCCCCGCCGCCGCCGGGATGCCCCTTGTCCC
GTCGCCGCCATGGAGTGCGCCATCGCCGCCGAGCTTGCACGTGCCGTCTC
CAAAGAGTACCGCTCGGGAGCCTTGGCCCGCCCCGGCGGCGGCAACACCC
ACCCCGACACCTTAGCCGCCGTGCCCCGGCCCATCCCCGCCGTACACCCC
CACCAAGTCGGCGGCGTCCCCGCCGCGTACGTCGCCTACATCCAGCCCGG
CGAGGACGGCGGCGGGGCCACCGGCACCCGGGCCATCCCCGTCGCCGCCT
ACCCGGTGTACGTCCAGCCCGGCACAGGCGTCCCTGGAGGCGGCGGCGGT
CAGTTGGGTGGGGCAGGGGGGGGGACAGCCGCCACCCCCGCCGCCGCCGG
GATGCCCCTTGTCCCG
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