mRNA_S-ischiensis_contig9.20491.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20491.1
Unique NamemRNA_S-ischiensis_contig9.20491.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20491.1 vs. uniprot
Match: A0A6H5JCJ9_9PHAE (Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ9_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.630e-13
Identity = 38/59 (64.41%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    7 GQVRGLAAAVGVRLHEVPMTPAVDVTELLGCFEQVDANASLAELLETLESLASSACHAL 183
            G ++GLAA VG RL EV MTP+VDVTELLGCFEQ DA A    L+ETLE LA   C  L
Sbjct:  448 GIIKGLAAGVGARLTEVAMTPSVDVTELLGCFEQTDARAVEESLVETLEELADKTCRVL 506
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BLAST of mRNA_S-ischiensis_contig9.20491.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.230e-13
Identity = 38/59 (64.41%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    7 GQVRGLAAAVGVRLHEVPMTPAVDVTELLGCFEQVDANASLAELLETLESLASSACHAL 183
            G ++GLAA VG RL EV MTP+VDVTELLGCFEQ DA A    L+ETLE LA   C  L
Sbjct: 1623 GIIKGLAAGVGARLTEVAMTPSVDVTELLGCFEQTDARAVQESLVETLEELADRTCRLL 1681
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BLAST of mRNA_S-ischiensis_contig9.20491.1 vs. uniprot
Match: A0A812NHP2_9DINO (Mdn1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812NHP2_9DINO)

HSP 1 Score: 53.9 bits (128), Expect = 2.440e-6
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 1 
Query:   13 VRGLAAAVGVRLHEVPMTPAVDVTELLGCFEQVDANASLAELLETLESLASSACHALASAP 195
            VR LAA   + L EVP+TPA+D +ELLGCFEQVDA   L +L   + + A     A  S P
Sbjct:  697 VRWLAAMARMPLQEVPLTPAMDASELLGCFEQVDARGLLHQLARWITAAAFGLRRAQESLP 757
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BLAST of mRNA_S-ischiensis_contig9.20491.1 vs. uniprot
Match: A0A1Q9DXF7_SYMMI (Protease Do-like 2, chloroplastic n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9DXF7_SYMMI)

HSP 1 Score: 52.4 bits (124), Expect = 8.200e-6
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   13 VRGLAAAVGVRLHEVPMTPAVDVTELLGCFEQVDANASLAEL 138
            VR LAA   + L EVP+TPA+D +ELLGCFEQVDA + L +L
Sbjct:  544 VRWLAAMAYMPLQEVPLTPAMDASELLGCFEQVDARSLLRQL 585
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BLAST of mRNA_S-ischiensis_contig9.20491.1 vs. uniprot
Match: A0A813AGA6_SYMMI (DEGP2 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813AGA6_SYMMI)

HSP 1 Score: 52.4 bits (124), Expect = 8.540e-6
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   13 VRGLAAAVGVRLHEVPMTPAVDVTELLGCFEQVDANASLAEL 138
            VR LAA   + L EVP+TPA+D +ELLGCFEQVDA + L +L
Sbjct:  948 VRWLAAMAYMPLQEVPLTPAMDASELLGCFEQVDARSLLRQL 989
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BLAST of mRNA_S-ischiensis_contig9.20491.1 vs. uniprot
Match: A0A7S1ZU90_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZU90_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.130e-5
Identity = 26/57 (45.61%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:   13 VRGLAAAVGVRLHEVPMTPAVDVTELLGCFEQVDANASLAELLETLESLASSACHAL 183
            V+ L+ +  VRL EV +T + DVTEL+GCFEQVD   +   +L  LE     AC  L
Sbjct:  344 VKVLSESCNVRLEEVSLTSSTDVTELIGCFEQVDCTETSKHILRLLEKCHKGACQVL 400
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BLAST of mRNA_S-ischiensis_contig9.20491.1 vs. uniprot
Match: A0A813G969_POLGL (Hypothetical protein (Fragment) n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813G969_POLGL)

HSP 1 Score: 50.1 bits (118), Expect = 5.570e-5
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 1 
Query:   13 VRGLAAAVGVRLHEVPMTPAVDVTELLGCFEQVDANASL 129
            VR LAA   + L EVP+TPA+D +ELLGCFEQVD    L
Sbjct: 2382 VRWLAAMAHMPLQEVPLTPAMDASELLGCFEQVDTQGGL 2420
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JCJ9_9PHAE1.630e-1364.41Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
D7FL28_ECTSI2.230e-1364.41Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A812NHP2_9DINO2.440e-649.18Mdn1 protein n=1 Tax=Symbiodinium natans TaxID=878... [more]
A0A1Q9DXF7_SYMMI8.200e-661.90Protease Do-like 2, chloroplastic n=1 Tax=Symbiodi... [more]
A0A813AGA6_SYMMI8.540e-661.90DEGP2 protein (Fragment) n=1 Tax=Symbiodinium micr... [more]
A0A7S1ZU90_9STRA1.130e-545.61Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A813G969_POLGL5.570e-561.54Hypothetical protein (Fragment) n=3 Tax=Polarella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:726037..728541 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue2.5e-11
Seed eggNOG ortholog2880.D7FL28
KEGG koko:K14572
KEGG Pathwayko03008,map03008
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,KOG1808@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817380.9981334-CDS-S-ischiensis_contig9:726036..7262011622817380.9981334-CDS-S-ischiensis_contig9:726036..726201Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 726037..726201 -
1695741070.1836839-CDS-S-ischiensis_contig9:726036..7262011695741070.1836839-CDS-S-ischiensis_contig9:726036..726201Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 726037..726201 -
1622817381.0099614-CDS-S-ischiensis_contig9:728433..7285411622817381.0099614-CDS-S-ischiensis_contig9:728433..728541Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 728434..728541 -
1695741070.1944818-CDS-S-ischiensis_contig9:728433..7285411695741070.1944818-CDS-S-ischiensis_contig9:728433..728541Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 728434..728541 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20491.1prot_S-ischiensis_contig9.20491.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 726037..728541 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20491.1

>prot_S-ischiensis_contig9.20491.1 ID=prot_S-ischiensis_contig9.20491.1|Name=mRNA_S-ischiensis_contig9.20491.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=91bp
GRGQVRGLAAAVGVRLHEVPMTPAVDVTELLGCFEQVDANASLAELLETL
ESLASSACHALASAPYHGGDHHDDGSRRKTGEEEEVGEGAA
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mRNA from alignment at S-ischiensis_contig9:726037..728541-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20491.1 ID=mRNA_S-ischiensis_contig9.20491.1|Name=mRNA_S-ischiensis_contig9.20491.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2505bp|location=Sequence derived from alignment at S-ischiensis_contig9:726037..728541- (Schizocladia ischiensis KU_0333)
GGGCGGGGTCAGGTGCGGGGCTTGGCGGCGGCAGTTGGGGTTCGTCTGCA
CGAGGTGCCCATGACCCCCGCGGTGGACGTCACGGAGCTTCTGGGGTGCT
TTGAGCAGGTGGGTTTCCGGAAGTTGTACGGTAAAAATACGGTGTCTCGC
GACGTCGATGTCACATCGGAAAACTTCCAATGAAAAATGTATTTCAGGGC
CACATCGATCTTTCGTGTCGTCGGACCCAATCGCGGTTCGGGTTGCGAAG
GTGCGATAATTGCATTTTTCGTAAAAAACGCTAGCCGGCGCAAAATTTAC
CGTCAAGATTCCTGTATATATGTACTCACGTGGTGCTTGCCATAGTCCCG
AGACCATTGACCACGCGCCTCGGTCGAGACGTAGCAGGCATTGCACAGTG
CACTCGTTTTTTGTCTACACGCATGCTTGCCTCTTTGCGGCAATGCAATG
CAACATACGAAACTCCTTTTTTTCACATACTTCTTATGTCGCAAGACAAA
CCAATGAGTACATCTTACTTGTGCTTGGCTCTTTGCGGCAACACAACGCA
ACACATGAAACTCGGTTTTTACACATACTTCTTACTTGTGCTTGCCTCTT
TGCGGCAACGCAACGCAAACACACGCCCAGGAGTGATTCATATACATGGT
AGTGAGGTGCAATCGCACGTGTGTGAGATTGACTGTACTCGTAATAACTA
TAGTAGTTGTCCCAGTTAAGAATTGAGTGTTCTTACAATAGTGATTATCA
CACGCCCAGAGTGTGACCCACGACAGCGCAACACGCTGCAGGAGGTACAG
TACACTCGGTTTCTACACGTACTTGTGCTTGCCTCTTGCGGCAACGCAAC
ACAAGCCCACGCCCAGGAATGATCCATATAAATTGTACAAGTAAGGAGGT
GCGATCGCACGTGTCTGAGATTGACTGTTCTCGTATTGCAGTACTTAGTT
GTCCCAGTTAAGAATTGAGTGTTCTTACATCAGTGATTATAACACGCCCA
GGAGTGTCACCCACCACAGCGCACACAGCCCAGAATATGCACAATTCTAG
GTGCAGGTAGTGTGTGTGTGTGTGTGCTTCCAGTACACAGTATATACACA
TGGCATTGTGCAGTACACTCCATTGTGCTTGCCTCTTTGCGGCAACGCAA
CGCAACCCATGCCCAGGAGTGATTCATATACATGGTAATGAGGTACAATC
GCACGTGTGTGAGATTGACTGTTCTCGTATTACTGTAGTAGTTATCCCAT
TTAAGAATTGGGTGTTGTTGTATTAGTGATTATCACATGCCCAGGAGTGT
TACCCGCCACAGCGCACACAACCCAGAGTGTGGCGGGCGTCAAACCCAGG
GCAGATTGAACCCCCCCGCGCGGCGCCGCGCCTGGCCAATGGCGAGGAGC
GGCTCCCGTGGGAAGCGCCGTTTTTGTCTGCCAACCGGGCCTCTCTTGTG
GGGTGTGTTTTGTAGCGGTGGGGGGGGTGGGGGGCTGCACAAGCCCCGCC
CCCCTCCTCCGCCGCGAGCGCCCCCCATCCCGTGGTCCGATTGGCCTGCT
CGGCGCAGACATCCACCGTGATTTATGTATCTCGCACCCATCACAACAAT
TCCAAGATTGTGACGAGGTACAATCGCACGTGTGTGAGATTGAGTGTTCT
TGTATTAGTAGTTGTAGTTGTCCCGTTTAAGAATGGAGTATTCTTGTATT
AGTGGTTCGACAGTTCGGTTGGCCTGCTCGGCGCAGACATCCACCGGTAA
TTCGTACAAATTGTACTCGTAACGAGGTACAATCGCACGTGTGTGAGATT
GAGTGTTCTCGTATTAGTAGGTGTCGACATATAGGAATTGAGTGTGTTGT
TATATTAGTGAATACACATCCGCCGGCGCCGTAGAGTTTTTTCTTTTTTT
TCGCCGAGCCCCCCGCAGCGGCGCCCATGAGTACTTTGCTCGCCAATAAT
TCTCTCTCCGTCAAGGCGCGATTGCATGTGTGATGTGATGTGATGTGATG
TGAACCTATGGTACTCGGATCACGTCACAGTACTGTACCCGCTTTTGCCT
CTGTCCAGGCGCTAAAATATACATAGTCAATGGTGACGTGGGTATAGCAA
GCACAGCGTAAGTATACTTCGCATATATGTACTTCGAAGTACAGTATATA
TACCAATGGCGATGAGCGATTGCGGGGATCATCCCGTGTGCGGCACAGCA
CACACGAGGCAGCCAATGGAGAGTACGGCACATAAACGATGCAATTCTCG
TCTACAACGCGCTCGTCATCGGCCCTCCTAACCCCCTGACCCACCCGCCT
CCGCGGGACCGCTGGCGGGGGACGGGCACCCCGCCCCCAGGTTGATGCCA
ACGCCTCCCTGGCCGAGCTGCTGGAAACCCTAGAGTCCCTGGCCTCCTCC
GCCTGCCATGCCCTCGCCAGTGCACCCTACCACGGAGGTGACCACCATGA
CGACGGCAGCAGGAGGAAGACGGGCGAGGAGGAGGAGGTTGGAGAGGGGG
CGGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:726037..728541-

>mRNA_S-ischiensis_contig9.20491.1 ID=mRNA_S-ischiensis_contig9.20491.1|Name=mRNA_S-ischiensis_contig9.20491.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=546bp|location=Sequence derived from alignment at S-ischiensis_contig9:726037..728541- (Schizocladia ischiensis KU_0333)
GGGCGGGGTCAGGTGCGGGGCTTGGCGGCGGCAGTTGGGGTTCGTCTGCA
CGAGGTGCCCATGACCCCCGCGGTGGACGTCACGGAGCTTCTGGGGTGCT
TTGAGCAGGGGCGGGGTCAGGTGCGGGGCTTGGCGGCGGCAGTTGGGGTT
CGTCTGCACGAGGTGCCCATGACCCCCGCGGTGGACGTCACGGAGCTTCT
GGGGTGCTTTGAGCAGGTTGATGCCAACGCCTCCCTGGCCGAGCTGCTGG
AAACCCTAGAGTCCCTGGCCTCCTCCGCCTGCCATGCCCTCGCCAGTGCA
CCCTACCACGGAGGTGACCACCATGACGACGGCAGCAGGAGGAAGACGGG
CGAGGAGGAGGAGGTTGGAGAGGGGGCGGCGGTTGATGCCAACGCCTCCC
TGGCCGAGCTGCTGGAAACCCTAGAGTCCCTGGCCTCCTCCGCCTGCCAT
GCCCTCGCCAGTGCACCCTACCACGGAGGTGACCACCATGACGACGGCAG
CAGGAGGAAGACGGGCGAGGAGGAGGAGGTTGGAGAGGGGGCGGCG
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