mRNA_S-ischiensis_contig9.20490.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20490.1
Unique NamemRNA_S-ischiensis_contig9.20490.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:724074..724400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size327
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817371.2342315-CDS-S-ischiensis_contig9:724073..7244001622817371.2342315-CDS-S-ischiensis_contig9:724073..724400Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 724074..724400 +
1695741063.2057574-CDS-S-ischiensis_contig9:724073..7244001695741063.2057574-CDS-S-ischiensis_contig9:724073..724400Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 724074..724400 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20490.1prot_S-ischiensis_contig9.20490.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 724074..724400 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20490.1

>prot_S-ischiensis_contig9.20490.1 ID=prot_S-ischiensis_contig9.20490.1|Name=mRNA_S-ischiensis_contig9.20490.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=109bp
PLPASLPIRHHLHRRRHRRGAQGDRRRAPPPPVARCPRATPAAPARGSLL
PPAPGPSPSAGRATRAGPAAPATAQSPPHRRPPRRTPAPLFLLFAPLGLL
LRFLLHRRP
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mRNA from alignment at S-ischiensis_contig9:724074..724400+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20490.1 ID=mRNA_S-ischiensis_contig9.20490.1|Name=mRNA_S-ischiensis_contig9.20490.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=327bp|location=Sequence derived from alignment at S-ischiensis_contig9:724074..724400+ (Schizocladia ischiensis KU_0333)
CCCCTTCCCGCCTCCCTTCCCATACGTCATCACCTTCACAGGCGTCGCCA
TCGCCGAGGAGCTCAGGGAGACCGACGGCGGGCCCCGCCGCCGCCGGTTG
CCCGCTGCCCGCGAGCCACACCAGCAGCTCCAGCACGCGGAAGTCTCTTG
CCACCCGCGCCCGGACCGAGTCCTTCAGCAGGGCGCGCCACCCGGGCCGG
CCCAGCAGCGCCGGCAACGGCACAATCCCCTCCACATCGTCGTCCTCCGC
GACGGACACCAGCGCCGCTGTTCCTTCTCTTTGCCCCGCTGGGTCTTCTG
CTCCGGTTTCTTCTTCACCGTCGACCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:724074..724400+

>mRNA_S-ischiensis_contig9.20490.1 ID=mRNA_S-ischiensis_contig9.20490.1|Name=mRNA_S-ischiensis_contig9.20490.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=654bp|location=Sequence derived from alignment at S-ischiensis_contig9:724074..724400+ (Schizocladia ischiensis KU_0333)
CCCCTTCCCGCCTCCCTTCCCATACGTCATCACCTTCACAGGCGTCGCCA
TCGCCGAGGAGCTCAGGGAGACCGACGGCGGGCCCCGCCGCCGCCGGTTG
CCCGCTGCCCGCGAGCCACACCAGCAGCTCCAGCACGCGGAAGTCTCTTG
CCACCCGCGCCCGGACCGAGTCCTTCAGCAGGGCGCGCCACCCGGGCCGG
CCCAGCAGCGCCGGCAACGGCACAATCCCCTCCACATCGTCGTCCTCCGC
GACGGACACCAGCGCCGCTGTTCCTTCTCTTTGCCCCGCTGGGTCTTCTG
CTCCGGTTTCTTCTTCACCGTCGACCACCCCTTCCCGCCTCCCTTCCCAT
ACGTCATCACCTTCACAGGCGTCGCCATCGCCGAGGAGCTCAGGGAGACC
GACGGCGGGCCCCGCCGCCGCCGGTTGCCCGCTGCCCGCGAGCCACACCA
GCAGCTCCAGCACGCGGAAGTCTCTTGCCACCCGCGCCCGGACCGAGTCC
TTCAGCAGGGCGCGCCACCCGGGCCGGCCCAGCAGCGCCGGCAACGGCAC
AATCCCCTCCACATCGTCGTCCTCCGCGACGGACACCAGCGCCGCTGTTC
CTTCTCTTTGCCCCGCTGGGTCTTCTGCTCCGGTTTCTTCTTCACCGTCG
ACCA
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