mRNA_S-ischiensis_contig9.20488.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20488.1 vs. uniprot
Match: A6GDV5_9DELT (Uncharacterized protein n=1 Tax=Plesiocystis pacifica SIR-1 TaxID=391625 RepID=A6GDV5_9DELT) HSP 1 Score: 138 bits (348), Expect = 3.810e-31 Identity = 124/414 (29.95%), Postives = 178/414 (43.00%), Query Frame = 3
Query: 111 LANGSAGVRIRFPPAFQRIHDDDQPPNAQQASFVDSNAVLWRCSKSPFLLDLAPHNEARLRADIDRAAKRDFEGAW-----------HVRRAGGLPAGALLDDTPRTADPTWTPIIELQVVSLEGPGRAVRVLHRLSYNRSNEVLCGRLLIPVKDGSISILSFAKSDMTGLRESLLFLRGGAGGSNGTGTAAAPENGGQRQARLDDPAHDKMFPNHVLTR-SRSAHAWLLSQSGLRVVAPXXXXXXXXXXXAVRLPQASCTITPPPRCLVLPPEVLDMDRTMVNFCRVDLDAERPSTLFEVKHEPGMSVPPGDSSALGWLVRQNNLGWAREGARDISV--ELRPPRQRAPAGRVYLDCIVRFVVGRGAGSECT-AVQLWIADDKGRVWRVGMSVGDEAEVEESMVQLEEVRSTF 1307
L G GVR++ + DQ P + + AV + SPF LDL+ LRA+++ A+ FE A H AL D PRTADP+W+P++E ++V E PGR +R L R++Y +E++ G+L +P+ G + + ++ +TG RES L + AA E+ GQ DDP HD FP H L+ R AWL GL+V+ V LP A+ +I PPP L +P EVL M T+ + R+ L+ S + + E P G L Q GW+ EGA ++ V E+ A A VR V SE + W DD G +RV + + E+ R TF
Sbjct: 7 LRAGLLGVRVQLGTEGTTLEIVDQGPRHLRWHDPELGAV-GMAAHSPFPLDLSDARRPTLRAELEAEARAIFERAHAANATQRAALEHTDPERAKAEAALFDRPPRTADPSWSPMVECELVERE-PGRVLRTLSRITYEPGHELIRGQLALPLAQGHLRLSLIHRAGLTGFRESALSVPL----LEAAEDPAAMEHPGQ--PFYDDPQHDAQFPQHGLSCVRRGLSAWLDPDDGLQVL---DTPPLQATGARVELPTAASSIVPPPGFLFVPREVLPMAPTLASLVRIGLEPAPDSMIDVWRLEQRFRGPGG----LRQFADQTLRGWSEEGAEEVQVHSEVASDGPHAVA--------VRSQVSMRTQSEPRHTLVYWFVDDDGESFRVSLGFS-------GAIAFEDQRPTF 390
BLAST of mRNA_S-ischiensis_contig9.20488.1 vs. uniprot
Match: A0A256WT79_9BACT (Uncharacterized protein n=1 Tax=Nitrospira sp. UW-LDO-01 TaxID=2004993 RepID=A0A256WT79_9BACT) HSP 1 Score: 133 bits (335), Expect = 1.820e-29 Identity = 118/429 (27.51%), Postives = 194/429 (45.22%), Query Frame = 3
Query: 120 GSAGVRIRFPPAFQRIHDDDQPPNAQQASFVDS-NAVLWRCSKSPFLLDLAPHNEARLRADIDRAAKRDFEGAWH----------VRRAGGLPAGAL-----LDDTPRTA-DPTWTPIIELQVVSLEGPGRAVRVLHRLSYNRSNEVLCGRLLIPVKDGSISILSFAKSDMTGLRESLLFLRGGAGGSNGTGTAAAPENGGQRQARLDDPAHDKMFPNHVLTRSRSAHAWLLSQS-GLRVVAPXXXXXXXXXXXAVRLPQASCTITPPPRCLVLPPEVLDMDRTMVNFCRVDLDAERPSTLFEVKHEPGMSVPPGDSSA-LGWLVRQNNLGWAREGARDISVELRPPRQRAPAGRVYLDCIVRFVVGRGAGSECTAVQLWIADDKGRVWRVGMSVGDEAEVEESMVQLEEVRSTFVPDPEQSSTAPQ*W 1349
GS G++ P ++Q D+D+ SF D+ + V W SP ++DL+ ++ LR D+ R FE + V ++ + A L PRT DP W+P++ ++ ++ + V+HRL+Y+ +E++ GR++I ++ G+I + + ++DMTG+RES L + G +G + QA +DDP D+ FP+H L+ R A W L+ LR+ P + LP++ C+ITPPPR V P MD ++ F R + +R S F+V P +S+ ++ L + ++ W R+G D +VE G + V F V G AV W D G V+RV M+ EE + + T+ PE + W
Sbjct: 10 GSHGLQFTPPSSWQLDADEDE-----FVSFRDAMHRVDWYLEFSPLIVDLSSRHDEVLREDLRRDTITVFESYFERAKTKSPIPPVEQSADIDAVTRETVHNLLSLPRTKRDPNWSPVVSIERATISDVP-VLAVIHRLTYSAGDELIIGRIVISLEQGTIYLSALRRADMTGVRESFLVITRQQPGEDGDSGLSEIS-----QAMIDDPTLDEGFPDHPLSAIRRALHWALTTPLDLRIRTPLSSEPETP----ITLPRSGCSITPPPRFRVCPAMAAKMDSSLTPFVRATVP-QRGSYGFDVWRVPSLSIKGRQATQRLRRIAEEHMREWGRDG--DPAVEFEWVEYSIRDGLPGVSTYVSFHVN---GQRNHAVANWFVDRDGTVFRVCMAGSISRSREELTTAVNDSTGTWQRLPEDVRPSSPWW 417
BLAST of mRNA_S-ischiensis_contig9.20488.1 vs. uniprot
Match: A0A532CZ90_9BACT (Uncharacterized protein n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A532CZ90_9BACT) HSP 1 Score: 125 bits (314), Expect = 9.480e-27 Identity = 119/439 (27.11%), Postives = 194/439 (44.19%), Query Frame = 3
Query: 111 LANGSAGVR-IRFPPAFQRIHDDDQPPNAQQASFVD-SNAVLWRCSKSPFLLDLAPHNEARLRADIDRAAKRDFEGAWHVRRAG--------GLPAGALLDDT-------PRTA-DPTWTPIIELQVVSLEGPGRAVRVLHRLSYNRSNEVLCGRLLIPVKDGSISILSFAKSDMTGLRESLLFLRGGAGGSNGTGTAAAPENGGQ------RQARLDDPAHDKMFPNHVLTRSRSAHAWLLSQS-GLRVVAPXXXXXXXXXXXAVRLPQASCTITPPPRCLVLPPEVLDMDRTMVNFCRVDLDAERPSTLFEVKHEPGMSVPPGDS-SALGWLVRQNNLGWAREGARDISVELRPPRQRAPAGRVYLDCIVRFVVGRGAGSECTAVQLWIADDKGRVWRVGMSVGDEAEVEESMVQLEEVRSTFVPDPEQSSTAPQ*W 1349
LA+ AG+ ++F P D D+ + ASF D ++ V W SP ++DL+ ++ LR D+ R FE + + + G A+ +T PRT DP W+P++ ++ ++ V V+HRL+Y+ +E++ GR+++ ++ G++ + + +++MTG+RES+L + T PE G QAR+DDP D+ FP+H L+ R A W L+ L + P + L ++ C+I PPPR V P MD ++ F R + +R S F+V P S+ L + ++ W R+G D +VE AG + V F V G AV W D G V+RV + EE + + +T+ PE T W
Sbjct: 4 LADLHAGIHGLQFTPPSSWQLDADE---GEFASFCDPTHRVDWYLEFSPLIVDLSNRHDEVLREDLRRDTITVFESYFEMAKTKSPIPPVEQGTDIDAVTRETVRNLLSLPRTKRDPNWSPVVSIERATISDVPVLV-VIHRLTYSAGDELIVGRIVLSLEQGTVYLSALRRANMTGVRESVLVI-----------TRQQPEEDGDLGLSEVSQARIDDPTLDEKFPDHPLSAIRRALHWALTTPLNLSIRTPLSPEPETP----MALSRSGCSIIPPPRFRVCPAMATRMDSSLTPFIRATVP-QRGSYSFDVWRVPSPSIKGRHVIQKLRRVAEKHMHEWGRDG--DSAVEFEWAEYSIRAGLPGVSTYVSFHVN---GHRNHAVANWFVDHDGTVFRVCIVGSISRSREELTTAVNDSTATWHRLPEDVRTRSPWW 417
BLAST of mRNA_S-ischiensis_contig9.20488.1 vs. uniprot
Match: A0A356TEW2_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A356TEW2_9DELT) HSP 1 Score: 123 bits (309), Expect = 2.590e-26 Identity = 120/391 (30.69%), Postives = 170/391 (43.48%), Query Frame = 3
Query: 108 ALANGSAGVRIRFPPAFQRIHDDDQPP-NAQQASFVDSNAVLWRCSKSPFLLDLAPHN-----EARLRADIDRAAKRDFEGAWHVRRAG--GLPAGALLDDTPRTADPTWTPIIELQVVSLEGPGRAVRVLHRLSYNRSNEVLCGRLLIPVK----DGSISILSFAKSDMTGLRESLLFLRGGAGGSNGTGTAAAPENGGQRQARLDDPAHDKMFPNHVLTRSRSAHAWLLSQSGLRVVAPXXXXXXXXXXXAVRLPQASCTITPPPRCLVLPPEVLDMDRTMVNFCRVDLDAERPSTLFEVKHEPGMSVPPGDSSALGWLVRQNNLGWAREGARDISVELRPPRQRAPAGRVYLDCIVRFVVGRGAGSECTAVQLWIADDKGRVWRVGMS 1244
+L + S GVR+ P QP +AQ + + W + SPF +DL E L DI+ +A+ + H R A G P + LDD P W+PI+ + ++G G A+ VL R SY +E L L++P+ G++ I + A++ +TGLRE++ L A E Q R+D A D+ P+H L+R+R A AWLL + P L C +T P R + L M T F R RP + +V P GD AL L R+ N WAREGA DI + P A GR ++ VRFVVG G+ +Q W+ D G V+R+G S
Sbjct: 6 SLHDDSLGVRVELPDL------PGQPAGDAQHVLHDEGGGLSWVLTHSPFPVDLRDEVADALFEDLLFQDIEDSARAEMR-MEHARIAAETGAPVQSRLDD------PRWSPIVSAERTEIDG-GPALAVLRRTSYAPGHETLAAELIVPLDVTAGGGALVIGAVARAGVTGLREAVQML------------ALGDELAMPSQDRVDALALDEQMPDHPLSRTRRALAWLLEPGRVTRTRPWSAAPRGEST----LEGPGCAVTAPARFARVE---LPMAPTAATFVRTVFPG-RPHRMLQVFRVPERVTGGGD--ALVRLARRMNGDWAREGAADIETD--PRLVAALDGRPQVEDHVRFVVG---GAPLQELQRWLLDPDGVVFRIGAS 355
BLAST of mRNA_S-ischiensis_contig9.20488.1 vs. uniprot
Match: A0A0S4L6Z5_9BACT (Uncharacterized protein n=1 Tax=Candidatus Nitrospira nitrosa TaxID=1742972 RepID=A0A0S4L6Z5_9BACT) HSP 1 Score: 120 bits (300), Expect = 3.930e-25 Identity = 103/391 (26.34%), Postives = 180/391 (46.04%), Query Frame = 3
Query: 120 GSAGVRIRFPPAFQRIHDDDQPPNAQQASFVDSNAVLWRCSKSPFLLDLAPHNEARLRADIDRAAKRDFEGAWHVRRAG--------GLPAGALLDDT-------PRTA-DPTWTPIIELQVVSLEGPGRAVRVLHRLSYNRSNEVLCGRLLIPVKDGSISILSFAKSDMTGLRESLLFLRGGAGGSNGTGTAAAPENGGQRQARLDDPAHDKMFPNHVLTRSRSAHAWLLSQS-GLRVVAPXXXXXXXXXXXAVRLPQASCTITPPPRCLVLPPEVLDMDRTMVNFCRVDLDAERPSTLFEVKHEPGMSVPPGDSSA-LGWLVRQNNLGWAREGARDISVELR----PPRQRAPAGRVYLDC------IVRFVVGRGAGSECTAVQLWIA 1208
GS G++ P ++Q D+D + + A+ + V W SP ++DL+ ++ LR D+ FE + + + G+ A+ +T PRT DP W+P++ ++ ++ V V+HRL+Y+ +E++ GR++I ++ G+I + + ++DMTG+RES L + G +G + QA +DDP D+ FP+H L+ R A W L+ L + P + LP++ C+ITPPPR V P MD ++ F R + + S F+V P +S+ ++ L + ++ W R+G D +VE R P Y+ I R+ +G + + V W+A
Sbjct: 10 GSHGLQFTPPSSWQLDADEDAFVSFRDAT----HRVDWYLEFSPLIVDLSTRHDELLREDLRHDTITVFESYFAMAKTESPIPPVEQGVDLDAVTRETVHNLLSLPRTKRDPNWSPVVSIERATISDVPVLV-VIHRLTYSAGDELIIGRIVISLEQGTIYLSALRRADMTGVRESFLVITRQQPGEDGDAGLSEIS-----QAMIDDPTLDERFPDHPLSAIRRALHWALTTPLNLSIRTPLSSEPETP----MMLPRSGCSITPPPRFRVCPAMAAKMDSSLTPFIRATVP-QGGSYGFDVWRVPSLSIKGRQATQRLRRIAEEHMREWGRDG--DPAVEFEWVEYSIRDGLPGVSTYVSFHVHGREITRWRIGLWIMTALSFVSAWLA 383
BLAST of mRNA_S-ischiensis_contig9.20488.1 vs. uniprot
Match: A0A0C1ZPR7_9DELT (Uncharacterized protein n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A0C1ZPR7_9DELT) HSP 1 Score: 58.5 bits (140), Expect = 9.490e-6 Identity = 51/174 (29.31%), Postives = 77/174 (44.25%), Query Frame = 3
Query: 831 VRLPQASCTITPPPRCLVLPPEVLDMDRTMVNFCRVDLDAERPSTLFEVKHEPGMSVPPGDSSALGWLVRQNNLGWAREGARDISVELRPPRQRAPAGRVYLDCIVRFVVGRGAGSECTAVQLWIADDKGRVWRVGMSVGDEAEVEESMVQLEEVRSTFVP----DPEQSSTAP 1340
V LP A C+I PPP + + EV+ M ++ +F RV ++ E P + +V + D+ L Q GWA EGA+D+ VE R A V C + F V +G C AD+ V R+ +S + E L V +++ P +PE S+ P
Sbjct: 27 VELPNAGCSIIPPPGFVFVSREVMPMAPSLASFVRVGIEPE-PDAMVDVWR---VDESVQDAGQLRAFADQTARGWANEGAQDVEVESRALADAPHAAAVR--CEISFTV-QGRSRRCLCCWFIAADNA--VTRIAVSFPGQVPFVEWESLLSAVVNSWQPLKPTEPEPSARGP 191 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20488.1 >prot_S-ischiensis_contig9.20488.1 ID=prot_S-ischiensis_contig9.20488.1|Name=mRNA_S-ischiensis_contig9.20488.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=422bp MATASPFERALANGSAGVRIRFPPAFQRIHDDDQPPNAQQASFVDSNAVLback to top mRNA from alignment at S-ischiensis_contig9:685678..690037+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20488.1 ID=mRNA_S-ischiensis_contig9.20488.1|Name=mRNA_S-ischiensis_contig9.20488.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4360bp|location=Sequence derived from alignment at S-ischiensis_contig9:685678..690037+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:685678..690037+ >mRNA_S-ischiensis_contig9.20488.1 ID=mRNA_S-ischiensis_contig9.20488.1|Name=mRNA_S-ischiensis_contig9.20488.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2532bp|location=Sequence derived from alignment at S-ischiensis_contig9:685678..690037+ (Schizocladia ischiensis KU_0333)back to top |