mRNA_S-ischiensis_contig9.20484.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20484.1
Unique NamemRNA_S-ischiensis_contig9.20484.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20484.1 vs. uniprot
Match: A0A5D6Y0S8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y0S8_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 8.500e-7
Identity = 36/101 (35.64%), Postives = 66/101 (65.35%), Query Frame = 1 
Query:   34 VLERNREALLGMVREEERRRKAVEARMRDL--ELESLASVAAAEAEAAGLRLEILDLRGRLRDLESGSDMAGLFSRYEADLSCLTAEVETLRARNLTLELR 330
            +L +N +ALL +V+E+++ R+A EAR  +   +L+ L +  + E +   ++L+ + LR ++R LE+ S +  +F +YE +L  L  EV+ LR RN++LEL+
Sbjct:  692 LLRKNYDALLTIVQEQQQLREAAEARAAEAAHDLDELRT--SFEVQVENMKLQNVSLRSKVRALENRSALPKVFEQYEQELQALLKEVQQLRDRNVSLELK 790
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BLAST of mRNA_S-ischiensis_contig9.20484.1 vs. uniprot
Match: A0A6G0XEH0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XEH0_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.400e-5
Identity = 32/102 (31.37%), Postives = 61/102 (59.80%), Query Frame = 1 
Query:   34 VLERNREALLGMVREEERRRKAVEARMRDLELESLASVAAAEAEAAGLRLEILDLRGRLRDLESGSDMAGLFSRYEADLSCLTAEVETLRARNLTLELRTAS 339
            +L ++ + LL ++R++    K +E ++ + +L      A  + +   L+L  +DLR +LR LES + M  +  +YEA++  LT +++ LR+ N+ LEL+ AS
Sbjct:  414 LLRKHYDDLLHVLRDQYDHTKQLERQVEEFQLSRDEIDATYQVQMHDLKLANVDLRSKLRVLESETGMQTVLDKYEAEMQALTMDLDKLRSHNVNLELKLAS 515
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A5D6Y0S8_9STRA8.500e-735.64Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A6G0XEH0_9STRA3.400e-531.37Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:667195..670647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue9.2e-09
Seed eggNOG ortholog4792.ETI52528
EggNOG OGs2CYVQ@1,2S6RR@2759,3QE50@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size373
Cds size372
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20484.1prot_S-ischiensis_contig9.20484.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 667195..670646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817379.6112459-CDS-S-ischiensis_contig9:667194..6672931622817379.6112459-CDS-S-ischiensis_contig9:667194..667293Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 667195..667293 +
1695741068.8830013-CDS-S-ischiensis_contig9:667194..6672931695741068.8830013-CDS-S-ischiensis_contig9:667194..667293Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 667195..667293 +
1622817379.6239853-CDS-S-ischiensis_contig9:668076..6682181622817379.6239853-CDS-S-ischiensis_contig9:668076..668218Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 668077..668218 +
1695741068.895978-CDS-S-ischiensis_contig9:668076..6682181695741068.895978-CDS-S-ischiensis_contig9:668076..668218Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 668077..668218 +
1622817379.6380577-CDS-S-ischiensis_contig9:670515..6706461622817379.6380577-CDS-S-ischiensis_contig9:670515..670646Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 670516..670646 +
1695741068.9051697-CDS-S-ischiensis_contig9:670515..6706461695741068.9051697-CDS-S-ischiensis_contig9:670515..670646Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 670516..670646 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20484.1

>prot_S-ischiensis_contig9.20484.1 ID=prot_S-ischiensis_contig9.20484.1|Name=mRNA_S-ischiensis_contig9.20484.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=124bp
GELELEEEWGGVLERNREALLGMVREEERRRKAVEARMRDLELESLASVA
AAEAEAAGLRLEILDLRGRLRDLESGSDMAGLFSRYEADLSCLTAEVETL
RARNLTLELRTASLHASQEGANPV
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mRNA from alignment at S-ischiensis_contig9:667195..670647+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20484.1 ID=mRNA_S-ischiensis_contig9.20484.1|Name=mRNA_S-ischiensis_contig9.20484.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3453bp|location=Sequence derived from alignment at S-ischiensis_contig9:667195..670647+ (Schizocladia ischiensis KU_0333)
GGAGAGTTGGAGTTGGAGGAGGAATGGGGAGGTGTGCTGGAGAGGAATCG
CGAGGCCCTGCTGGGGATGGTGCGGGAGGAGGAGCGCAGGCGGAAGGCGG
TGAGACCCGTGCCTCACTGCCCCCTTGGTTTGCCTCAAGAAGAAAGTTGG
GGGAATCTCTTGACACCTCCAAGCACGAAGTAGTGAACCCAAACTTACCC
CACGCCACCAAACGCCCCCCAACCAACAACAAGCTTCCTTTTCGTGGCGG
TTTTGCCCCGCGGTTGAACCCCCCGCGCACCCATGCCGTGCAAAAGCATC
TCCCCAGCCATGGACTAAAAACCTAAAACACGGCGGAACGGGAACAGGTG
TTCTTAGTTCCTTGATGTGATCATCACTAATACAAGAACACTCAATTCTT
AAATGGGACAGCTACTAATACGAGCGCACTCAATATCACGCACGTCCGAT
TGTACTTGGAAGTATCTCGTCAGTTTTTTGGAATTGTTGTGAGAGATGCG
AGTTCAGTTTATATGCATCACCGTGCAAAAGCATCTCCGAGCAACGGACC
AAAAAACTAAAAACGCTTGAACAGGAACAGGTGTTCTTAGTTCCTTGATG
GACTACTTCGAAGCAATCACTAGTATAGGAACAATTCTTAAATGGGACAA
CTACTAATACGAGAACACTCCCATCTCACACACGCGCGATTGTACCTCGC
TACAGTTTATATGAATCAGAGCCCCGCCAATGCACTATGGCAAAAGCATC
TCCCAACCGACCAAAACCTACCTAAAAACGGCGGAATGGGAAGAGGTGGA
TACAACTGCTAATACGAGAACAGTCAATCTCACACACGTGCGATTATACC
TCGTTGCTTACAATTGATATGAATCACAACAGGTGGAGGCCCGTATGCGA
GACCTAGAGCTGGAGAGTCTTGCCTCGGTGGCGGCGGCGGAGGCGGAGGC
AGCCGGGCTCCGTTTGGAGATCCTGGATCTGCGGGGGAGGCTCAGGGACC
TGGAGTCAGGGTCAGACATGGCCGGTGGGTAGTGAGCAATGATGGAATGT
CGACTATTAAAATATACTTCGAAGTATATAGCAAAGCGTTATATATCGAA
TCGATATAACGATCGCCGCATACATCGGCGCTATATAGACTGATGTATTC
CTATTAATATCCTGGATCTGCAGGGGAGGCTGAGGGACCTGGAGTCAGGG
TCAGACATGGCCAGTGGTTACAGTAGTGAGCAGTGGTGGAATATCTAAGC
AAATCAACCTATTTGTCGACAGTACTGGTCTATTTTGAGTGGTAGATAAG
CGGCGAGTTCCAGGCCCCGTTTATATGTGTATCGATAGTCGATATTTGAG
ATCCTGGATCTGCGGGGGAGGCTGAGGGACCTGGAGTCAGGGTTAGACAT
GGCCGATGGGCAGTGAGGGGACGGGGGGGGGGGGGGGCAGACGGATGGGA
GGGACCAGACCCATGGTACTGCAAGTAAGATCACTACAGTAGGATATATA
CTCGTACTCTGCTCCGTCTCGAACGAGGCGCGGGGTCAATGGTCTCGGGA
CCACGGCAAGCACCACGTGAGTACATATATATATACATATATACACTCTA
TATATACTTCCTTCGGACCACATTATTATACACAGTTTGTTTGGTGGCCC
TGCACGCTGCATATACTGTGTGCCAATGCATGCCGTTTGGCAATTGCATA
TGTCATGCCCACCCCTTACCAACTTTAAATTTCAGCTGAAACGCTCAAGT
GGTTCTGGAGTTATGGGCCAGTGACTGAACCCCAGTTTTGAACCTCCAGG
GTGGGGCCGCGACATGCTTGACAGCGCCGCCACTGCAGTTGCGACGCTCG
TTTGTGGGCTGTGAGAGGCAGATTTTTGCGCGGTTTCTTGCTTCAGGGAG
CCAATCAACTCAGCTATCCGTCCGCCAAATTTGGGCACCAACGGACGAAC
GTATCGTATCACGTATCGTTCTTTCCCGGGCCGTATCGGGCCGTCCAGGG
GATAATCGGACGCGCACGCTGTTCTCAAGCTACGGGTCGAATTAATTAGC
AAGCGGAGTCAGGCACGATCGATTGCTCTCATCGAGAACAACATTCTGAC
AAATTTTCATCGAAATCGGAGTTGTGGTTCCGATGTTATGAGCATAAAAC
CGATTTTACCCGATTTCACCGTATCGTACGTACGTACGGACCTATGATAC
GGGCGGATTGTTTCTCCGAAACGGAAGTTTTTGGGGTGGTGAATGCAACG
GTGAAAGTTGCGGCCCGATCGGAGGGCTAGAGCTTGAGCTGTCGCTCTCT
GAAGCTAGCACCTGCGATTCATGCACAAAATCGGGTCATTCTAGCGCATG
TGTTTTTGGGGGTGAACACAATTCGCCGAACTCATACGTCCGTTGTCTCG
AGAACTACTGGGCCAATTTCGCGCTTTTTGGGGGGGTCTGGCACTTCAAG
AGACTGCCGTCACGATGGTGTATCGTTCGTTTGTGCAAGACCGTCACAGC
AACGTTCACCACCCTCTAAAAAAACTGTGTATAATAAAGCGGTCCGGAGG
AAGTATATGTACGAGTACTCGAGTATATGAACTCACGTTGTGCTTGCCGT
AGTCCCGAGACCATTGACCCCGCGCCTCGGTCGAGACCGATACGAAGTAC
AGCAACAAACTTACGATTTACAGTACTTCGAAGTATACACACGCACACGT
TGCCCCCTCGACCGCCCCTTCCCTCCCCCACCTGCAACCCTTCCCCCCCC
ATAGCCTGCCTCCCCAACAAGGGAGGTTGGCTTGTCGCCAGCCTCCCCAA
CAACAGAGGACATAGAGCTCTGTCCCGTCGGGTCACCCCTGTGATGTCAT
GTGACATGATACGATGTGATGTCAAACTACAGCACCTTGGAGTGCACAGC
ACATCACATCACTTCACATCACATCCTGCTCCGTCTCGACCGAGGCGCGT
GGTCAATGGTCTCGGGACTACGGCAAGCACAACGTGAGTACATATGTTCC
CATAGGGTCACCCCTGCGGGACATGCGGTCAATGGCCATGTGGCTACCTA
CGGCAGGCAGCTCATGAAGTACACACACACGTGCACGCACACACACACAA
GCCCTCTCCCCCCCCCCCGGATCATCAGGTCTGTTTTCCCGATACGCACA
CGCACACACGCCCTCACACACACGCACGCACACACACACACACACACGAG
CCCCCCCCCCCGACCCTCAGGTCTGTTTTCCCGATACGAAGCGGACGCAC
GGCCAGTGGCCATACGGCTACTGCAGGCAACTCATGAACTCCCCCCATCG
GGGCCCTGCCCCGATCGTCAGGCCTGTTTTCCCGATACGAAGCAGACTTG
AGCTGCCTCACCGCCGAGGTAGAGACCCTCCGCGCCCGCAACCTCACCCT
TGAGCTCCGGACAGCCTCCCTGCACGCCTCGCAAGAGGGTGCAAACCCCG
TCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:667195..670647+

>mRNA_S-ischiensis_contig9.20484.1 ID=mRNA_S-ischiensis_contig9.20484.1|Name=mRNA_S-ischiensis_contig9.20484.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=744bp|location=Sequence derived from alignment at S-ischiensis_contig9:667195..670647+ (Schizocladia ischiensis KU_0333)
GGAGAGTTGGAGTTGGAGGAGGAATGGGGAGGTGTGCTGGAGAGGAATCG
CGAGGCCCTGCTGGGGATGGTGCGGGAGGAGGAGCGCAGGCGGAAGGCGG
GAGAGTTGGAGTTGGAGGAGGAATGGGGAGGTGTGCTGGAGAGGAATCGC
GAGGCCCTGCTGGGGATGGTGCGGGAGGAGGAGCGCAGGCGGAAGGCGGT
GGAGGCCCGTATGCGAGACCTAGAGCTGGAGAGTCTTGCCTCGGTGGCGG
CGGCGGAGGCGGAGGCAGCCGGGCTCCGTTTGGAGATCCTGGATCTGCGG
GGGAGGCTCAGGGACCTGGAGTCAGGGTCAGACATGGCCGGTGGAGGCCC
GTATGCGAGACCTAGAGCTGGAGAGTCTTGCCTCGGTGGCGGCGGCGGAG
GCGGAGGCAGCCGGGCTCCGTTTGGAGATCCTGGATCTGCGGGGGAGGCT
CAGGGACCTGGAGTCAGGGTCAGACATGGCCGGCCTGTTTTCCCGATACG
AAGCAGACTTGAGCTGCCTCACCGCCGAGGTAGAGACCCTCCGCGCCCGC
AACCTCACCCTTGAGCTCCGGACAGCCTCCCTGCACGCCTCGCAAGAGGG
TGCAAACCCCGTCGCCTGTTTTCCCGATACGAAGCAGACTTGAGCTGCCT
CACCGCCGAGGTAGAGACCCTCCGCGCCCGCAACCTCACCCTTGAGCTCC
GGACAGCCTCCCTGCACGCCTCGCAAGAGGGTGCAAACCCCGTC
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