mRNA_S-ischiensis_contig9.20481.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20481.1
Unique NamemRNA_S-ischiensis_contig9.20481.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:663465..664093 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size305
Cds size303
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817364.5291402-CDS-S-ischiensis_contig9:663464..6636331622817364.5291402-CDS-S-ischiensis_contig9:663464..663633Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 663465..663633 +
1695741058.9971008-CDS-S-ischiensis_contig9:663464..6636331695741058.9971008-CDS-S-ischiensis_contig9:663464..663633Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 663465..663633 +
1622817364.5403063-CDS-S-ischiensis_contig9:663959..6640931622817364.5403063-CDS-S-ischiensis_contig9:663959..664093Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 663960..664093 +
1695741059.0079288-CDS-S-ischiensis_contig9:663959..6640931695741059.0079288-CDS-S-ischiensis_contig9:663959..664093Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 663960..664093 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20481.1prot_S-ischiensis_contig9.20481.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 663465..664093 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20481.1

>prot_S-ischiensis_contig9.20481.1 ID=prot_S-ischiensis_contig9.20481.1|Name=mRNA_S-ischiensis_contig9.20481.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=101bp
MHARTPPIPGDLPRGPDSGPAAPRPGQGHRRAGRHRHHPCQRWRWRRQRQ
RRQLLAGHVATHIRMGFQADADSGATAGRKLPHLGAGRRQRGCRGRALGA
R
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mRNA from alignment at S-ischiensis_contig9:663465..664093+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20481.1 ID=mRNA_S-ischiensis_contig9.20481.1|Name=mRNA_S-ischiensis_contig9.20481.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=629bp|location=Sequence derived from alignment at S-ischiensis_contig9:663465..664093+ (Schizocladia ischiensis KU_0333)
ATGCATGCACGCACGCCTCCCATCCCAGGGGACCTCCCCCGCGGCCCAGA
CAGCGGCCCGGCAGCTCCACGCCCTGGACAAGGTCATCGCAGAGCTGGCC
GACACCGCCACCACCCATGCCAACGGTGGCGGTGGCGGCGGCAGCGGCAG
CGGCGGCAACTCCTGGCAGGTAACCATGGTACAAAGTGCGATTTTTTTGC
CCAAATAGTTTGATCGAATATCGATTGACCTGTTCCTCGGTCCATGTGAT
GTCGTGATACAAAAACTATAGCGCAAATTAACGTACTCATTGAGGTCTTT
TCCTACGTCAAAATTTCACGGTCATCAGATCAGATGCGTCCTTCACAGGG
CGGCCCGGGCACCAACAATAGCGATCGCAATGTTTGAAACAACTACTAAT
ACGAGAACAGTCAATCGCACACACGTGCGATTTTACCGTATTGCAATTTT
ATATGAATCACTGCAATTTTGTACGGTGGCTGCTTGTACTGGCAGGGCAC
GTTGCGACTCATATCCGCATGGGATTCCAAGCTGACGCAGATAGTGGGGC
CACTGCTGGCCGGAAACTCCCGCACCTGGGTGCTGGCCGCCGTCAGCGCG
GATGCCGGGGCCGGGCCCTGGGGGCCCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:663465..664093+

>mRNA_S-ischiensis_contig9.20481.1 ID=mRNA_S-ischiensis_contig9.20481.1|Name=mRNA_S-ischiensis_contig9.20481.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=606bp|location=Sequence derived from alignment at S-ischiensis_contig9:663465..664093+ (Schizocladia ischiensis KU_0333)
ATGCATGCACGCACGCCTCCCATCCCAGGGGACCTCCCCCGCGGCCCAGA
CAGCGGCCCGGCAGCTCCACGCCCTGGACAAGGTCATCGCAGAGCTGGCC
GACACCGCCACCACCCATGCCAACGGTGGCGGTGGCGGCGGCAGCGGCAG
CGGCGGCAACTCCTGGCAGATGCATGCACGCACGCCTCCCATCCCAGGGG
ACCTCCCCCGCGGCCCAGACAGCGGCCCGGCAGCTCCACGCCCTGGACAA
GGTCATCGCAGAGCTGGCCGACACCGCCACCACCCATGCCAACGGTGGCG
GTGGCGGCGGCAGCGGCAGCGGCGGCAACTCCTGGCAGGGCACGTTGCGA
CTCATATCCGCATGGGATTCCAAGCTGACGCAGATAGTGGGGCCACTGCT
GGCCGGAAACTCCCGCACCTGGGTGCTGGCCGCCGTCAGCGCGGATGCCG
GGGCCGGGCCCTGGGGGCCCGGGGCACGTTGCGACTCATATCCGCATGGG
ATTCCAAGCTGACGCAGATAGTGGGGCCACTGCTGGCCGGAAACTCCCGC
ACCTGGGTGCTGGCCGCCGTCAGCGCGGATGCCGGGGCCGGGCCCTGGGG
GCCCGG
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