mRNA_S-ischiensis_contig9.20480.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20480.1
Unique NamemRNA_S-ischiensis_contig9.20480.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:662438..662961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size257
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817364.486752-CDS-S-ischiensis_contig9:662437..6624761622817364.486752-CDS-S-ischiensis_contig9:662437..662476Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 662438..662476 +
1695741058.9745362-CDS-S-ischiensis_contig9:662437..6624761695741058.9745362-CDS-S-ischiensis_contig9:662437..662476Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 662438..662476 +
1622817364.497986-CDS-S-ischiensis_contig9:662743..6629591622817364.497986-CDS-S-ischiensis_contig9:662743..662959Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 662744..662959 +
1695741058.9855664-CDS-S-ischiensis_contig9:662743..6629591695741058.9855664-CDS-S-ischiensis_contig9:662743..662959Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 662744..662959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20480.1prot_S-ischiensis_contig9.20480.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 662438..662959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20480.1

>prot_S-ischiensis_contig9.20480.1 ID=prot_S-ischiensis_contig9.20480.1|Name=mRNA_S-ischiensis_contig9.20480.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=85bp
GGGGGRSLHRGAQRLGASRRDHHRPPRSPRRAPPLWGRPHAAPLLRGRCH
CPSLRHGVGSRPPHCAVTGAGGKVPRHRVEQHGRR
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mRNA from alignment at S-ischiensis_contig9:662438..662961+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20480.1 ID=mRNA_S-ischiensis_contig9.20480.1|Name=mRNA_S-ischiensis_contig9.20480.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=524bp|location=Sequence derived from alignment at S-ischiensis_contig9:662438..662961+ (Schizocladia ischiensis KU_0333)
GGAGGAGGTGGAGGAAGGTCGTTGCACCGTGGGGCTCAGGTCGGTCTCTC
CCCATGCACGGCTATGGCGAGCACCTCGCGAGTCCGCACACAACCCCTTC
GGGACCCAACCAGTTTCTACTAAGTACTAGTACGAGTACTACTTCGAAGT
AGTACTTCGTAAACATCACGCGGAGCGTGTGATGCGTCCTCCAAGTGCGC
AGACTCGGTAGATTAGACTCGGTAGATTTGCGTCACCCACATCGCATCAC
AGCATCACACTCCCCCCCACTGCACCATGCGTGTCCCCCCGCCCCGCCCC
CCGCAGCGCCTGGGAGCTAGTCGGAGAGACCATCACCGACCTCCTCGCTC
CCCCCGCCGAGCCCCCCCGCTATGGGGCCGCCCCCACGCCGCCCCCCTCC
TCCGCGGCCGCTGCCACTGCCCTTCGCTTCGCCACGGTGTGGGCTCCCGA
CCTCCCCACTGCGCTGTCACTGGTGCGGGCGGCAAAGTCCCGCGGCACAG
GGTGGAGCAGCATGGGCGGCGCCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:662438..662961+

>mRNA_S-ischiensis_contig9.20480.1 ID=mRNA_S-ischiensis_contig9.20480.1|Name=mRNA_S-ischiensis_contig9.20480.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=510bp|location=Sequence derived from alignment at S-ischiensis_contig9:662438..662961+ (Schizocladia ischiensis KU_0333)
GGAGGAGGTGGAGGAAGGTCGTTGCACCGTGGGGCTCAGGGAGGAGGTGG
AGGAAGGTCGTTGCACCGTGGGGCTCAGCGCCTGGGAGCTAGTCGGAGAG
ACCATCACCGACCTCCTCGCTCCCCCCGCCGAGCCCCCCCGCTATGGGGC
CGCCCCCACGCCGCCCCCCTCCTCCGCGGCCGCTGCCACTGCCCTTCGCT
TCGCCACGGTGTGGGCTCCCGACCTCCCCACTGCGCTGTCACTGGTGCGG
GCGGCAAAGTCCCGCGGCACAGGGTGGAGCAGCATGGGCGGCGCCGCCTG
GGAGCTAGTCGGAGAGACCATCACCGACCTCCTCGCTCCCCCCGCCGAGC
CCCCCCGCTATGGGGCCGCCCCCACGCCGCCCCCCTCCTCCGCGGCCGCT
GCCACTGCCCTTCGCTTCGCCACGGTGTGGGCTCCCGACCTCCCCACTGC
GCTGTCACTGGTGCGGGCGGCAAAGTCCCGCGGCACAGGGTGGAGCAGCA
TGGGCGGCGC
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