mRNA_S-ischiensis_contig9.20479.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20479.1
Unique NamemRNA_S-ischiensis_contig9.20479.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20479.1 vs. uniprot
Match: A0A830H4H5_9CHLO (Kinesin motor domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H4H5_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 8.220e-7
Identity = 48/149 (32.21%), Postives = 67/149 (44.97%), Query Frame = 1 
Query:   19 AVLPPDLLALSEELEELGGGDTRVANLVAVVSI--RRSIGCPLQAPTAVWP--EGGNEVCVA-------LPGRGEPCRFSVTRALVDP--SPEDLWAGLGGEVLAWLSDGFNCSVLSMGAAGAGKTAALLGLGGPPRGDPRAIGLGSAA 426
            A +P +L+   +EL+ LGGGDTR+A   AV  +   +  G   Q P    P  +  +EV V         P       +    A+V+   S  DLW  +G   L W+ DGF+  +++ GA   GKT AL           R  GL SAA
Sbjct:   53 ASMPSELVKQQQELDRLGGGDTRLAATFAVCRLCAGQRPGANAQEPPGAAPSNDSPHEVVVRDARLPLHAPASAATRSYKGFEAVVNAHASHRDLWNDMGTHALQWVLDGFSACIVAHGAVATGKTHALY---------DRPTGLASAA 192
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BLAST of mRNA_S-ischiensis_contig9.20479.1 vs. uniprot
Match: A0A8J5XDV0_DIALT (Kinesin motor domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XDV0_DIALT)

HSP 1 Score: 51.6 bits (122), Expect = 8.560e-5
Identity = 40/128 (31.25%), Postives = 62/128 (48.44%), Query Frame = 1 
Query:   34 DLLALSEELEELGGGDTRVANLVAVVSIRRSIGCPLQAPTAVWPEGGNEVCV-----ALPGRGEPCRFSVTRALVDP--------SPEDLWAGLGGEVLAWLSDGFNCSVLSMGAAGAGKTAALLGLG 378
            +LL LS EL+ELGGGD R+A+   +  +R     P+ +  A   E   +  +     A+P   E   +   R  V P        S   L   +G + L WL  GF+ ++L++G  G+GK+ +L G G
Sbjct:    4 ELLELSAELDELGGGDARIAHATVIARLR-----PVFSARAPIAEAAGDYVLLRDPRAVPSAAEDVAWR--RYAVSPGGAFGGSISNAQLHDAVGSDALDWLWAGFDVTLLALGPQGSGKSYSLHGHG 124
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A830H4H5_9CHLO8.220e-732.21Kinesin motor domain-containing protein n=1 Tax=Py... [more]
A0A8J5XDV0_DIALT8.560e-531.25Kinesin motor domain-containing protein n=1 Tax=Di... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:657789..662336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue3.1e-08
Seed eggNOG ortholog2903.EOD36870
Preferred nameSTARD9
KEGG koko:K16491,ko:K17915,ko:K18806
KEGG Pathwayko04340,ko05200,ko05217,map04340,map05200,map05217
KEGG ModuleM00678
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0245@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons4
Model size429
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20479.1prot_S-ischiensis_contig9.20479.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 657789..662336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817379.5403204-CDS-S-ischiensis_contig9:657788..6578741622817379.5403204-CDS-S-ischiensis_contig9:657788..657874Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 657789..657874 +
1695741068.8416052-CDS-S-ischiensis_contig9:657788..6578741695741068.8416052-CDS-S-ischiensis_contig9:657788..657874Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 657789..657874 +
1622817379.5522776-CDS-S-ischiensis_contig9:660178..6602361622817379.5522776-CDS-S-ischiensis_contig9:660178..660236Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 660179..660236 +
1695741068.8548014-CDS-S-ischiensis_contig9:660178..6602361695741068.8548014-CDS-S-ischiensis_contig9:660178..660236Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 660179..660236 +
1622817379.563348-CDS-S-ischiensis_contig9:661354..6614811622817379.563348-CDS-S-ischiensis_contig9:661354..661481Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 661355..661481 +
1695741068.863877-CDS-S-ischiensis_contig9:661354..6614811695741068.863877-CDS-S-ischiensis_contig9:661354..661481Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 661355..661481 +
1622817379.575342-CDS-S-ischiensis_contig9:662178..6623361622817379.575342-CDS-S-ischiensis_contig9:662178..662336Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 662179..662336 +
1695741068.8731024-CDS-S-ischiensis_contig9:662178..6623361695741068.8731024-CDS-S-ischiensis_contig9:662178..662336Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 662179..662336 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20479.1

>prot_S-ischiensis_contig9.20479.1 ID=prot_S-ischiensis_contig9.20479.1|Name=mRNA_S-ischiensis_contig9.20479.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=143bp
MASFRCAVLPPDLLALSEELEELGGGDTRVANLVAVVSIRRSIGCPLQAP
TAVWPEGGNEVCVALPGRGEPCRFSVTRALVDPSPEDLWAGLGGEVLAWL
SDGFNCSVLSMGAAGAGKTAALLGLGGPPRGDPRAIGLGSAA*
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mRNA from alignment at S-ischiensis_contig9:657789..662336+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20479.1 ID=mRNA_S-ischiensis_contig9.20479.1|Name=mRNA_S-ischiensis_contig9.20479.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4548bp|location=Sequence derived from alignment at S-ischiensis_contig9:657789..662336+ (Schizocladia ischiensis KU_0333)
ATGGCCTCTTTCCGTTGTGCTGTTCTGCCGCCCGACTTGTTGGCGCTGTC
GGAGGAGCTGGAGGAACTCGGGGGCGGAGACACAAGGTGAGCCCCGCGCA
ACAGGCTTTTGGCATCAGCAGGGTTGGCGCTTAACCCCTAAGTGGTGCCC
CTGTAGGCCCTTAATTAGAGTTAATTAGGGGTAGTTAGACCTAAAATGAA
GGCTAGTTAGGCCCTAATTAACCTCTAAGTGCCAACCCTGGGCATCAGCA
CCACCCCACTTCGCTTTGCCCGATGCCCCCACTATGTACTTGCCCAAGTT
CTATGCGTGTCTCACAAGGACCGCAGGTGTTGTTGCAGCGCCACGAATCA
AAGCGATCACTGATACGGGAAACCATGCGGACCACCCTTCACCGTCGTGT
GGAGCCAACACATTGTCTGCCGTCGGGTCCTGGCCCAGCCGCAGTGCAGT
GCGGTGCAGTCCTTGAGCACATCAGCTCAAAGTATACTGCCATGGCGCCC
CGTGCTTCCCAAGGCCCGCATCACATTATCATTTGAGCTCGCTGCCTGCC
GTAGCATTTCCACCCTTTTGCAAGCCCCCCATCGCTCTTACATTGTACAT
GTGGGCGCCAGGGATGTCATATGACGTGTGTACATGCGCTGCTGTAGGCT
CCGTCTCGGTCGAGGCGCGCGGTCAGTGGTCTCGGGACTAAGTACGGCAA
GCGCCGCGTGAGTACTGTGTATAATTCGAAGTGCATGTTTATGTAGGTGT
ACGAGTAGTATAGGCTGACCACCCTACATTACATGCATACCAACAGCCCC
ACACCAGCTAGCCCTGCCGGTGACAACTTGCGCTTGGAGCTTGCGCTTGG
AGCACTTAACCCTTTTACCCCTGGAAAATCGGACTTGCACACTAAGACCC
TATGACTATACGGACCCCAGGGGTAAAAGGGTTAACCTCAAGTACCCGCG
CACCGACTCTCCCGGCAGAGCCCGCTTACCTATTTCACTAGTGCTACTTA
GTTTTGTAGATTAAGTACTTCCAAGTACTTTAGTGAATGTATTTCGTACA
TGCGTTGGCCGAGAAGGCCTGGCAAGCATAGTGAGCATTAGTCAGCAAAG
CGCTTGGAAGTACCCCGCGGGGCCCGTTCCGTCTTGGCCACGGCGCGTGG
CCAACCGTCTCGGGACTACGGCAATCGCAGCTACTCCAAGTACATCTCCT
CCCCGCCCACCTCCCCCTCCTCCTCTTCTCCCCTTCCCCACACAAAATTC
CCCTGGCGAGCTATAAGGAAGGGCCACTGGTGAGGTCTCTAGTGACGTGG
CCCGCGTGTTGTTCCTGATAATGTATCTACATCTACGTACTTCCAGCGCC
CCCTATAGCGGCAACTGCAACCGGCCTCGGGCTGGGCCCGCCGCCCCCCC
GGCGGAACGTGCCTAGCTACCGCAGTTCCACGGCTGTCCTCGTGAACATC
TGCACTGCGCGTGCGTTAGTCGATAATACAAGTACCGCCTGGTAAGCTGA
GGAAAACTTTTATTACTGAAGTACCCGCGTGCTTTTCCGTACCCATTCGG
CCTGTGCCGTTTCTGCGCTTGTGCAGTACCGGTTTGCCCGCCCCATGCGG
CCTACTGTACTTCGAAGCACCTCATACTTGCGCGCCGCACGTTGGTTTTT
CGCAGTGTGGAGAGACCATCCCCGGGTCCATTGAATTAGGTTGGCCCTTT
TACCCCTGGGGTCCATACAATCATAGGGTTTTACTGGGCAAGTCCAATTC
AGCAGGGGCAAAGGGGTTAAGCCCTTCGCCACCCAGCTGCGTGACAGCGC
CCGGTGCAACCCTGAAAACCCCAACGGCCTTGGGGTAGTATACCACTGTC
GACGCAGGCAGAATGTACCTCCAAGTATTGTTTGTAGCTCTGTACTCTGC
GATGTGATGTGATGCGATGTGATGTCAAACTACTGCACATGAGAGTGCAC
ATCAAATCGCATCATATCACTATCATTGTGATGTCAAACTACTGTACATG
AGAGTGCACATCACATCACATCATATCATGAGTACTAGGGTACTAACATG
GCCACCCCTCCGCCCCTGGCGGAGGTGTGGGTGCCCCCCCCCTCCCACCC
GGGCTCTGCCAGGGGAGGGAGGGGGCCTGCTCCGTCTCAGTCGAGGCACT
ATGGAGGGCAATGGTCCCGGGACGACTACGGCAAGCACAGCACTACAGTA
GTACATATTTACTACCAGAACTTGGTAGTGCTTGAGAGTAACATGAGGAG
GTGTACACACACCCCGGACCCCTACGACACGGTTTGGAGGACCTGCAGAG
GCGAAACGGTTTCTCTTTTCTTTAGCCCCGCTCTACGTGACATGACCCCC
CTTGTCTCTCACGGCACCGCGCCACCCCGGCCGGTATCAGGGTTGCGAAC
CTGGTGGCGGTGGTGAGCATCCGCCGGTCCATTGGATGTCCCCTCCAGGT
GGGAGCCGGGCGGACCCGGGCCTTAACCCTTTCACCCCTGCTAAATTGGA
CTTCACACTAAAACCCTATTGTTGTATTGACCCCAGGGGTAAAAGGGATA
AGCCCGTACCGTAGAGGAGCCATGACACCACCTACAAAAGTGCCAAATAC
TGTATTCACAGAAAGAGCGAGGTGCAGGCCACGTCACCAAAGACCGTAGT
ACTGTAGTGTAAATCCCGCACCGCCGCGCCCGCCTCCCCCTCTCCCCCTC
CCCTTCCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCC
TCCCCCCCCGTCCCCGCTCTCACACAGTCCTTCCCTGGCGAGCTAAGGAA
GGGCCACTGTTGAAGGCCTTGGGTGACAGGACCCACACCTAGTACAGCCC
TGTGTTGTTCCTGTTGTACGAGTATATGTAAATCCCGCGCCAAGACCCCC
GTGTCCCCTCTGGATTCCGAAGCGTTGGGCTCGGGCGTTTTTCGCGTGGC
AATAGTCTCCGGGCCGATGGCAAGGGAAGCACGACTTGAGTAGGGTAATC
ATCAGAGAGATTTTGCCTTCACAGGACAATATTGATTTCCGGGGGATATC
TCTAGCCGTACAGGCCATGGATTGTCCCGAGAGTGTTCCCCCAATTCCTG
AGGGAGATTTTCCGAGTTTTCCTGCGCGAACCCGGCCAGTATTCGGTGAG
AAATGCCCTCCCGAAAATTGGCATGGGGGGGCAAGATCTCTCCGACGATT
ACGGCACGACTTGAGTAGGCACCGTGCAGTCCACAGCATATCGCAACGAT
TCACATAACTGGCATTTGTGATTTCTTCACATTGCCTGGTGATAGCTTCG
ATGTGATGTGGGACTACTGAATTTTGGAGCGCACCGTCTCGATCGAGGCC
CGTGGTCAATGGTCTCGGGACTACGGCAAGCACAACGTGAGTATAGTACA
TATATATACTCAGAAGTGTGTACACATATATATCGCATTGCGTCACTCAC
GCAAGTTCCCAACGCATCGCGTCAAATCACTGCCACTTGTGACTCGTGCG
GCTGCGCGATGGGTAAGTAACATAAATGTATGTGTACTCCATATATGTGA
ACCCTGGCGTACGCAGGCACCGACGGCAGTGTGGCCGGAGGGGGGGAACG
AGGTGTGCGTGGCCTTGCCCGGCCGAGGGGAGCCCTGCCGCTTCTCTGTT
ACGCGTGCCCTGGTGGACCCGTCGCCGGAGGACCTGTGGGCAGGTGATAG
ACGCGATGTGATGTGATGTGATGCGTTGGGATATTACATGGCGTCATGTG
AGTGACGCGATGTGATGTGATGTGATGTGATGCGTTGGGATCTTCCCGTG
ATGTGATGTGATGTAGTGTGGTGTGATGTGATGCGTTGGGATCTTATGTG
ACGTGATGTGATGTGATGTGATGCAATGTGGTGTGGTGTGATGTGATGTG
ATGCGTTGGGATCTTGATACGCGCGCCCTGGCGGTGGACTCGTCGCCGGA
GGACCTGTGGGCAGGTGAGAGGCGGGGGCAGTGAGGGGACGGGAAACAGG
CAGTGATGGAATATCGATCAGTAGATGGTAATCGGGATCGACTGATTTTG
TGGGTGGCGGTACTAACTACTTGGATTTAGTGTGGGTCAAACTTTCGAGT
ATCGACTATCGATAGATATATAGATAGGTCAGTACTGTCGATAAACAGGT
TGATTTTGCTTAGATGTTCCGTCACTGGAAACAGGTGGGACAGCGAGCGG
GTAGAGGCAGGCAGGCGGGGAAGCCCCCCCAGCACCAGCAGCAGCAGCAG
CAGAGGGAGGGAGGCGGGAGTGGGGGGGAAGGAGGAAGGGAGAGATACAG
AGAGAGAGAGAGAGAGAGAGAGAGAGACGGAGATTGCAGCTGATTGGGTC
GGGTTTGGTCCGCCCCCCCCCTGCCAACGGTTTTCCACAGGCCTGGGAGG
CGAGGTGCTCGCCTGGCTGTCGGATGGATTCAACTGCTCCGTCCTTTCCA
TGGGCGCCGCCGGCGCCGGCAAGACGGCTGCCCTCCTGGGCCTCGGTGGC
CCACCAAGAGGGGACCCCCGCGCCATTGGCCTCGGCAGCGCGGCGTAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:657789..662336+

>mRNA_S-ischiensis_contig9.20479.1 ID=mRNA_S-ischiensis_contig9.20479.1|Name=mRNA_S-ischiensis_contig9.20479.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=858bp|location=Sequence derived from alignment at S-ischiensis_contig9:657789..662336+ (Schizocladia ischiensis KU_0333)
ATGGCCTCTTTCCGTTGTGCTGTTCTGCCGCCCGACTTGTTGGCGCTGTC
GGAGGAGCTGGAGGAACTCGGGGGCGGAGACACAAGATGGCCTCTTTCCG
TTGTGCTGTTCTGCCGCCCGACTTGTTGGCGCTGTCGGAGGAGCTGGAGG
AACTCGGGGGCGGAGACACAAGGGTTGCGAACCTGGTGGCGGTGGTGAGC
ATCCGCCGGTCCATTGGATGTCCCCTCCAGGGTTGCGAACCTGGTGGCGG
TGGTGAGCATCCGCCGGTCCATTGGATGTCCCCTCCAGGCACCGACGGCA
GTGTGGCCGGAGGGGGGGAACGAGGTGTGCGTGGCCTTGCCCGGCCGAGG
GGAGCCCTGCCGCTTCTCTGTTACGCGTGCCCTGGTGGACCCGTCGCCGG
AGGACCTGTGGGCAGGCACCGACGGCAGTGTGGCCGGAGGGGGGGAACGA
GGTGTGCGTGGCCTTGCCCGGCCGAGGGGAGCCCTGCCGCTTCTCTGTTA
CGCGTGCCCTGGTGGACCCGTCGCCGGAGGACCTGTGGGCAGGCCTGGGA
GGCGAGGTGCTCGCCTGGCTGTCGGATGGATTCAACTGCTCCGTCCTTTC
CATGGGCGCCGCCGGCGCCGGCAAGACGGCTGCCCTCCTGGGCCTCGGTG
GCCCACCAAGAGGGGACCCCCGCGCCATTGGCCTCGGCAGCGCGGCGTAG
GCCTGGGAGGCGAGGTGCTCGCCTGGCTGTCGGATGGATTCAACTGCTCC
GTCCTTTCCATGGGCGCCGCCGGCGCCGGCAAGACGGCTGCCCTCCTGGG
CCTCGGTGGCCCACCAAGAGGGGACCCCCGCGCCATTGGCCTCGGCAGCG
CGGCGTAG
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