mRNA_S-ischiensis_contig9.20472.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20472.1
Unique NamemRNA_S-ischiensis_contig9.20472.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig9.20472.1 vs. uniprot
Match: A0A6H5JHA7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA7_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.860e-25
Identity = 56/106 (52.83%), Postives = 74/106 (69.81%), Query Frame = -1
Query:   16 SYFLYLLRTNFPKLWDDTVLADGGAVVCVPQSSSLAPGHLTREDAETHVLLPSPTETPGDFVTLNGRMVSIVGDEVVTREGFLEPRRVRLLVTEDLVYYTGAGAKQ 333
            +YFL++LRT+FP++W   V      V+CVPQS+SL+   LT  +A  HVL PS  E PGDF+TL+G  VS+VG+EVVT  GF E RRVRLL++EDL  +  A  K+
Sbjct:  100 AYFLHMLRTDFPEIWAAVVAGTVDTVICVPQSTSLSQEDLTAAEARAHVLTPSE-EVPGDFLTLDGWSVSLVGNEVVTGAGFPEWRRVRLLLSEDLGQHLAAAGKE 204          
BLAST of mRNA_S-ischiensis_contig9.20472.1 vs. uniprot
Match: D7FTN1_ECTSI (Similar to hect domain and RLD 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN1_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 8.840e-22
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = -1
Query:   19 LLRTNFPKLWDDTVLADGGAVVCVPQSSSLAPGHLTREDAETHVLLPSPTETPGDFVTLNGRMVSIVGDEVVTREGFLEPRRVRLLVTEDL-VYYTGAGAK 318
            +LR +FP++W   V   G  V+CVPQS+SL+   LT  +A  HVL PS  E PGDF+TL+G  VS+VG+EVVT  GF E RRVRLL++EDL  +   AG K
Sbjct:    1 MLRMDFPEIWAAVVAGTGDTVICVPQSTSLSQEDLTAAEARAHVLTPSE-EVPGDFLTLDGWSVSLVGNEVVTGAGFPEWRRVRLLLSEDLGQHLVAAGEK 100          
BLAST of mRNA_S-ischiensis_contig9.20472.1 vs. uniprot
Match: A0A7S3YG70_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG70_HETAK)

HSP 1 Score: 77.4 bits (189), Expect = 4.650e-15
Identity = 41/97 (42.27%), Postives = 67/97 (69.07%), Query Frame = -1
Query:   46 NSYFLYLLRTNFPKLWDDTVLADGGAVVCVPQSSSLAPGHLTREDAETHVLLPSPTETPGDFVTLNGRMVSIVGDEVVTREGFLEPRRVRLLVTEDL 336
            ++ FL +LRT+FPK+W   +  D   +VC PQS+SL P  +T ED +THV+  + T+  G++ +LN ++V++VG E+VT+ G+  PR VR+L  ++L
Sbjct:   51 DALFLLVLRTSFPKVWQWLLAND--CMVCCPQSASL-PQTITLEDVQTHVV--TQTKIAGEYESLNNKVVTMVGAEMVTQRGYPAPRTVRVLRVDEL 142          
BLAST of mRNA_S-ischiensis_contig9.20472.1 vs. uniprot
Match: A0A1V9ZZ16_9STRA (VPS9 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZ16_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.880e-13
Identity = 42/98 (42.86%), Postives = 56/98 (57.14%), Query Frame = -1
Query:   49 MNSYFLYLLRTNFPKLWDDT-VLADGGAVVCVPQSSSLAPGHLTREDAETHVLLPSPTETPGDFVTLNGRMVSIVGDEVVTREGFLEPRRVRLLVTED 339
            M+  FL   + N P L     V  D   ++C+PQS SL  G +T  D ETH LLP      G + TLNG+ V+I G  + T+ GF EPR VR+L+TE+
Sbjct:    1 MDDPFLRSFQANLPVLLKKIHVQVDTKCLICIPQSVSLLSGVITINDLETHFLLPDAKL--GQYQTLNGKHVAIAGTHIHTKNGFREPRIVRILITEE 96          
BLAST of mRNA_S-ischiensis_contig9.20472.1 vs. uniprot
Match: A0A485KDP6_9STRA (Aste57867_5972 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDP6_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.340e-11
Identity = 32/73 (43.84%), Postives = 50/73 (68.49%), Query Frame = -1
Query:   40 VVCVPQSSSLAPGHLTREDAETHVLLPSPTETPGDFVTLNGRMVSIVGDEVVTREGFLEPRRVRLLVTEDLVY 258
            +VC+PQS SL  G ++ ED   HVL+P P    G + TL+G+ V+I G  VVT++GF+E R +R+L+T++  +
Sbjct:   38 LVCIPQSLSLLSGTVSAEDLFAHVLVPDPDV--GHYQTLDGKHVAIAGSYVVTKDGFVEARTIRILMTDEFTH 108          
BLAST of mRNA_S-ischiensis_contig9.20472.1 vs. uniprot
Match: A0A8K1CEM3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CEM3_PYTOL)

HSP 1 Score: 67.8 bits (164), Expect = 7.350e-11
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = -1
Query:   52 LADGGAVVCVPQSSSL-APGHLTREDAETHVLLPSPTET---PGDFVTLNGRMVSIVGDEVVTREGFLEPRRVRLLVTE 276
            L     V CVPQ+ SL A   ++++D  TH LLP    T   PG + TLNG+ VSI+G +V TR GF EPR+VR+L++E
Sbjct:   23 LLPSNCVFCVPQARSLVADVAVSQDDVFTHFLLPVSRGTEQQPGQYETLNGKTVSIIGSQVHTRRGFDEPRKVRILLSE 101          
BLAST of mRNA_S-ischiensis_contig9.20472.1 vs. uniprot
Match: X6NXT3_RETFI (Uncharacterized protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NXT3_RETFI)

HSP 1 Score: 62.0 bits (149), Expect = 7.260e-9
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = -1
Query:   40 FLYLLRTNFPKLWDDTVLADGGAVVCVPQSSSLAPGHLTREDAETHVLLPSPTETPGDFVTLNGRMVSIVGDEVVTREGFLEPRRVRLLVTEDLVY 327
            F  L+R    +L+D+  +   G  +CVP SSS+  G  T E  +THVL  SP    G++++ NGR V+I    + T+ GF  PR V ++++E+L Y
Sbjct:   60 FFQLIRDKHERLYDN--VCRNGWYICVPHSSSIEDGDFTDEFIKTHVLKNSP-HFKGEYISQNGRSVTIEKGVISTKAGFNSPREV-VILSEELFY 151          
BLAST of mRNA_S-ischiensis_contig9.20472.1 vs. uniprot
Match: A0A7S2FSU3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FSU3_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.120e-8
Identity = 32/74 (43.24%), Postives = 51/74 (68.92%), Query Frame = -1
Query:  106 FLYLLRTNFPKLWDDTVLADGGAVVCVPQSSSLAPGHLTREDAETHVLLPSPTETPGDFVTLNGRMVSIVGDEV 327
            FLY+LRT +P+LW+ T+ A+   VV VP+S+++    LT  D ETH+L   PT+ PG++ T   + V+I+G+E+
Sbjct:   52 FLYILRTEYPELWE-TIEANSATVV-VPRSTAIGID-LTLADVETHILY--PTKIPGEYRTSRNQCVAIIGNEL 120          
BLAST of mRNA_S-ischiensis_contig9.20472.1 vs. uniprot
Match: T0REC7_SAPDV (VPS9 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0REC7_SAPDV)

HSP 1 Score: 58.2 bits (139), Expect = 1.730e-7
Identity = 30/76 (39.47%), Postives = 48/76 (63.16%), Query Frame = -1
Query:   49 ADG-GAVVCVPQSSSLAPGHLTREDAETHVLLPSPTETPGDFVTLNGRMVSIVGDEVVTREGFLEPRRVRLLVTED 273
            ADG   ++C+PQS SL    ++R   +TH LLP      G + +LNG+ +++VG  + T+ GF + R VR+L+TE+
Sbjct:   30 ADGLKCLMCIPQSLSLLTAAISRTQLQTHFLLPDAQV--GQYRSLNGKQIAVVGAHIHTKAGFHDARVVRILMTEE 103          
BLAST of mRNA_S-ischiensis_contig9.20472.1 vs. uniprot
Match: A0A067BVU2_SAPPC (VPS9 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BVU2_SAPPC)

HSP 1 Score: 57.4 bits (137), Expect = 3.030e-7
Identity = 31/76 (40.79%), Postives = 47/76 (61.84%), Query Frame = -1
Query:   49 ADG-GAVVCVPQSSSLAPGHLTREDAETHVLLPSPTETPGDFVTLNGRMVSIVGDEVVTREGFLEPRRVRLLVTED 273
            ADG   +VCVPQS SL    ++    +TH LLP      G + +LNG+ +++VG  + T+ GF + R VR+L+TE+
Sbjct:   29 ADGLKCLVCVPQSLSLLTAAVSLSQLQTHFLLPDAQV--GQYRSLNGKQIAVVGAHIHTKAGFRDARVVRILMTEE 102          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5JHA7_9PHAE4.860e-2552.83Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FTN1_ECTSI8.840e-2253.47Similar to hect domain and RLD 4 n=1 Tax=Ectocarpu... [more]
A0A7S3YG70_HETAK4.650e-1542.27Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1V9ZZ16_9STRA6.880e-1342.86VPS9 domain-containing protein n=1 Tax=Thraustothe... [more]
A0A485KDP6_9STRA7.340e-1143.84Aste57867_5972 protein n=1 Tax=Aphanomyces stellat... [more]
A0A8K1CEM3_PYTOL7.350e-1148.10Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
X6NXT3_RETFI7.260e-937.50Uncharacterized protein n=1 Tax=Reticulomyxa filos... [more]
A0A7S2FSU3_9STRA1.120e-843.24Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
T0REC7_SAPDV1.730e-739.47VPS9 domain-containing protein n=1 Tax=Saprolegnia... [more]
A0A067BVU2_SAPPC3.030e-740.79VPS9 domain-containing protein n=1 Tax=Saprolegnia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:609052..609393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_006280.1
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.9774654-CDS-S-ischiensis_contig9:609051..6093931622817370.9774654-CDS-S-ischiensis_contig9:609051..609393Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 609052..609393 +
1695741063.1029756-CDS-S-ischiensis_contig9:609051..6093931695741063.1029756-CDS-S-ischiensis_contig9:609051..609393Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 609052..609393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20472.1prot_S-ischiensis_contig9.20472.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 609052..609393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20472.1

>prot_S-ischiensis_contig9.20472.1 ID=prot_S-ischiensis_contig9.20472.1|Name=mRNA_S-ischiensis_contig9.20472.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=114bp
RGPLALLGPGSGVVHQVLCDEQTDTAWLEEALTGHHLVSNDADHAAVESD
KVPRRLGGRGQQDVRLCVLPGEVPRGQGAALGHAHHGAAIGQHGVVPQLG
KVGAQEVQKVAIH*
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mRNA from alignment at S-ischiensis_contig9:609052..609393+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20472.1 ID=mRNA_S-ischiensis_contig9.20472.1|Name=mRNA_S-ischiensis_contig9.20472.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=342bp|location=Sequence derived from alignment at S-ischiensis_contig9:609052..609393+ (Schizocladia ischiensis KU_0333)
CGTGGCCCTCTTGCCCTGCTTGGCCCCGGCTCCGGTGTAGTACACCAGGT CCTCTGTGACGAGCAGACGGACACGGCGTGGCTCGAGGAAGCCCTCACGG GTCACCACCTCGTCTCCAACGATGCTGACCATGCGGCCGTTGAGAGTGAC AAAGTCCCCCGGCGTCTCGGTGGGCGAGGGCAACAAGACGTGCGTCTCTG CGTCCTCCCGGGTGAGGTGCCCCGGGGCCAGGGAGCTGCTCTGGGGCACG CACACCACGGCGCCGCCATCGGCCAGCACGGTGTCGTCCCACAACTTGGG AAAGTTGGTGCGCAAGAGGTACAAAAAGTAGCTATTCATTGA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:609052..609393+

>mRNA_S-ischiensis_contig9.20472.1 ID=mRNA_S-ischiensis_contig9.20472.1|Name=mRNA_S-ischiensis_contig9.20472.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=684bp|location=Sequence derived from alignment at S-ischiensis_contig9:609052..609393+ (Schizocladia ischiensis KU_0333)
CGTGGCCCTCTTGCCCTGCTTGGCCCCGGCTCCGGTGTAGTACACCAGGT
CCTCTGTGACGAGCAGACGGACACGGCGTGGCTCGAGGAAGCCCTCACGG
GTCACCACCTCGTCTCCAACGATGCTGACCATGCGGCCGTTGAGAGTGAC
AAAGTCCCCCGGCGTCTCGGTGGGCGAGGGCAACAAGACGTGCGTCTCTG
CGTCCTCCCGGGTGAGGTGCCCCGGGGCCAGGGAGCTGCTCTGGGGCACG
CACACCACGGCGCCGCCATCGGCCAGCACGGTGTCGTCCCACAACTTGGG
AAAGTTGGTGCGCAAGAGGTACAAAAAGTAGCTATTCATTGACGTGGCCC
TCTTGCCCTGCTTGGCCCCGGCTCCGGTGTAGTACACCAGGTCCTCTGTG
ACGAGCAGACGGACACGGCGTGGCTCGAGGAAGCCCTCACGGGTCACCAC
CTCGTCTCCAACGATGCTGACCATGCGGCCGTTGAGAGTGACAAAGTCCC
CCGGCGTCTCGGTGGGCGAGGGCAACAAGACGTGCGTCTCTGCGTCCTCC
CGGGTGAGGTGCCCCGGGGCCAGGGAGCTGCTCTGGGGCACGCACACCAC
GGCGCCGCCATCGGCCAGCACGGTGTCGTCCCACAACTTGGGAAAGTTGG
TGCGCAAGAGGTACAAAAAGTAGCTATTCATTGA
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