mRNA_S-ischiensis_contig9.20471.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20471.1
Unique NamemRNA_S-ischiensis_contig9.20471.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig9.20471.1 vs. uniprot
Match: D7FTN1_ECTSI (Similar to hect domain and RLD 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN1_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 1.280e-19
Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = -1 
Query:   19 MQVVESYLMQRVHAGVYAWMARRHEASDAGFARALALLRRHTPADLGVDGHFHCDLAEAAAAVGRVGENASPMDKMLALKEATRLIGVAVQEHVDRYHGGDTGDDDDD 342
            MQV ESYLM R+  G+ AW+A  H  +DA   RAL LLR HT  D+GV   F CDL+ A   +  +G  A+PMDKML +KE+ +LI  +VQ+++D     D  D D D
Sbjct:  373 MQVTESYLMSRLAPGLGAWLAGLHAGADAELHRALTLLRYHTQEDIGVKRPFQCDLSSAVECLRGLGVCATPMDKMLQVKESLKLIQTSVQQNLDARRHADDDDRDGD 480
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BLAST of mRNA_S-ischiensis_contig9.20471.1 vs. uniprot
Match: M4B9G1_HYAAE (VPS9 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B9G1_HYAAE)

HSP 1 Score: 53.5 bits (127), Expect = 7.160e-6
Identity = 30/93 (32.26%), Postives = 47/93 (50.54%), Query Frame = -1 
Query:   61 QVVESYLMQRVHAGVYAWMARRHEASDAGFARALALLRRHTPADLGVDGHFHCDLAEAAAAVGRVGENASPMDKMLALKEATRLIGVAVQEHV 339
            QVVE YLM+R+H  ++  +       DA     ++ +R +TP D G+   F C + EA   +  V E  +P+D +L LK     I  A+  +V
Sbjct:   97 QVVECYLMERLHDLIFPRVITSCRELDAKLHFVMSRMRHYTPQDFGIRKEFQCFVVEARDTLLTVVEKKTPLDMLLVLKTCMDQISDAITRNV 189
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTN1_ECTSI1.280e-1947.22Similar to hect domain and RLD 4 n=1 Tax=Ectocarpu... [more]
M4B9G1_HYAAE7.160e-632.26VPS9 domain-containing protein n=1 Tax=Hyaloperono... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:607573..607916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size344
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.9420567-CDS-S-ischiensis_contig9:607572..6079141622817370.9420567-CDS-S-ischiensis_contig9:607572..607914Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 607573..607914 +
1695741063.087672-CDS-S-ischiensis_contig9:607572..6079141695741063.087672-CDS-S-ischiensis_contig9:607572..607914Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 607573..607914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20471.1prot_S-ischiensis_contig9.20471.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 607573..607914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20471.1

>prot_S-ischiensis_contig9.20471.1 ID=prot_S-ischiensis_contig9.20471.1|Name=mRNA_S-ischiensis_contig9.20471.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=114bp
WAGGVSIVIIVAGVAAVVPVDVLLHGDADEACGLLEGQHLVHWGGVFAHP
AHRRGGLGQVTVEVAVDAQVGRGVAAEQGERPGEPGVRSLVPPGHPRVNA
CVDALHQVALHHLH
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mRNA from alignment at S-ischiensis_contig9:607573..607916+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20471.1 ID=mRNA_S-ischiensis_contig9.20471.1|Name=mRNA_S-ischiensis_contig9.20471.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=344bp|location=Sequence derived from alignment at S-ischiensis_contig9:607573..607916+ (Schizocladia ischiensis KU_0333)
TGGGCCGGGGGGGTAAGCATCGTCATCATCGTCGCCGGTGTCGCCGCCGT
GGTACCGGTCGACGTGCTCCTGCACGGCGACGCCGATGAGGCGTGTGGCC
TCCTTGAGGGCCAGCATCTTGTCCATTGGGGAGGCGTTTTCGCCCACCCG
GCCCACCGCCGCGGCGGCCTCGGCCAGGTCACAGTGGAAGTGGCCGTCGA
CGCCCAGGTCGGCCGGGGTGTGGCGGCGGAGCAGGGCGAGCGCCCGGGCG
AACCCGGCGTCCGAAGCCTCGTGCCGCCGGGCCATCCACGCGTAAACGCC
TGCGTGGACGCGCTGCATCAGGTAGCTCTCCACCACCTGCATCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:607573..607916+

>mRNA_S-ischiensis_contig9.20471.1 ID=mRNA_S-ischiensis_contig9.20471.1|Name=mRNA_S-ischiensis_contig9.20471.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=684bp|location=Sequence derived from alignment at S-ischiensis_contig9:607573..607916+ (Schizocladia ischiensis KU_0333)
TGGGCCGGGGGGGTAAGCATCGTCATCATCGTCGCCGGTGTCGCCGCCGT
GGTACCGGTCGACGTGCTCCTGCACGGCGACGCCGATGAGGCGTGTGGCC
TCCTTGAGGGCCAGCATCTTGTCCATTGGGGAGGCGTTTTCGCCCACCCG
GCCCACCGCCGCGGCGGCCTCGGCCAGGTCACAGTGGAAGTGGCCGTCGA
CGCCCAGGTCGGCCGGGGTGTGGCGGCGGAGCAGGGCGAGCGCCCGGGCG
AACCCGGCGTCCGAAGCCTCGTGCCGCCGGGCCATCCACGCGTAAACGCC
TGCGTGGACGCGCTGCATCAGGTAGCTCTCCACCACCTGCATTGGGCCGG
GGGGGTAAGCATCGTCATCATCGTCGCCGGTGTCGCCGCCGTGGTACCGG
TCGACGTGCTCCTGCACGGCGACGCCGATGAGGCGTGTGGCCTCCTTGAG
GGCCAGCATCTTGTCCATTGGGGAGGCGTTTTCGCCCACCCGGCCCACCG
CCGCGGCGGCCTCGGCCAGGTCACAGTGGAAGTGGCCGTCGACGCCCAGG
TCGGCCGGGGTGTGGCGGCGGAGCAGGGCGAGCGCCCGGGCGAACCCGGC
GTCCGAAGCCTCGTGCCGCCGGGCCATCCACGCGTAAACGCCTGCGTGGA
CGCGCTGCATCAGGTAGCTCTCCACCACCTGCAT
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