mRNA_S-ischiensis_contig9.20469.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig9.20469.1
Unique NamemRNA_S-ischiensis_contig9.20469.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig9contigS-ischiensis_contig9:606603..606982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size382
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817370.8769877-CDS-S-ischiensis_contig9:606602..6069801622817370.8769877-CDS-S-ischiensis_contig9:606602..606980Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 606603..606980 +
1695741063.0632448-CDS-S-ischiensis_contig9:606602..6069801695741063.0632448-CDS-S-ischiensis_contig9:606602..606980Schizocladia ischiensis KU_0333CDSS-ischiensis_contig9 606603..606980 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig9.20469.1prot_S-ischiensis_contig9.20469.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig9 606603..606980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig9.20469.1

>prot_S-ischiensis_contig9.20469.1 ID=prot_S-ischiensis_contig9.20469.1|Name=mRNA_S-ischiensis_contig9.20469.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=126bp
PNTCTRLPAPRGTRPETDNPETADVTATVRSSLDPLPAAAAAARSGPGAI
PRPGGGRSGSGKASGGRPASARADSTFSRSATSADASGTSNKACSAAASA
SAAAAAAPAVAVAALPAAVPLPLPIC
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mRNA from alignment at S-ischiensis_contig9:606603..606982+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig9.20469.1 ID=mRNA_S-ischiensis_contig9.20469.1|Name=mRNA_S-ischiensis_contig9.20469.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=380bp|location=Sequence derived from alignment at S-ischiensis_contig9:606603..606982+ (Schizocladia ischiensis KU_0333)
CCAAACACGTGCACGCGCCTGCCCGCCCCCAGGGGAACCCGTCCCGAAAC
CGACAACCCTGAAACTGCCGACGTAACAGCCACGGTGCGGTCGTCCCTTG
ACCCACTCCCCGCCGCCGCCGCCGCCGCCAGAAGCGGGCCAGGCGCCATC
CCCAGGCCCGGGGGCGGCCGCAGCGGGTCCGGGAAGGCCTCGGGGGGCAG
GCCGGCGTCCGCGAGGGCGGACAGCACGTTCTCCCGGAGCGCCACCTCCG
CGGACGCCTCCGGCACCTCCAACAAAGCCTGCTCGGCGGCGGCATCGGCA
TCTGCGGCAGCGGCAGCAGCACCAGCGGTGGCAGTGGCAGCGCTGCCGGC
GGCTGTACCGCTCCCGCTCCCCATTTGTCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig9:606603..606982+

>mRNA_S-ischiensis_contig9.20469.1 ID=mRNA_S-ischiensis_contig9.20469.1|Name=mRNA_S-ischiensis_contig9.20469.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=756bp|location=Sequence derived from alignment at S-ischiensis_contig9:606603..606982+ (Schizocladia ischiensis KU_0333)
CCAAACACGTGCACGCGCCTGCCCGCCCCCAGGGGAACCCGTCCCGAAAC
CGACAACCCTGAAACTGCCGACGTAACAGCCACGGTGCGGTCGTCCCTTG
ACCCACTCCCCGCCGCCGCCGCCGCCGCCAGAAGCGGGCCAGGCGCCATC
CCCAGGCCCGGGGGCGGCCGCAGCGGGTCCGGGAAGGCCTCGGGGGGCAG
GCCGGCGTCCGCGAGGGCGGACAGCACGTTCTCCCGGAGCGCCACCTCCG
CGGACGCCTCCGGCACCTCCAACAAAGCCTGCTCGGCGGCGGCATCGGCA
TCTGCGGCAGCGGCAGCAGCACCAGCGGTGGCAGTGGCAGCGCTGCCGGC
GGCTGTACCGCTCCCGCTCCCCATTTGTCCAAACACGTGCACGCGCCTGC
CCGCCCCCAGGGGAACCCGTCCCGAAACCGACAACCCTGAAACTGCCGAC
GTAACAGCCACGGTGCGGTCGTCCCTTGACCCACTCCCCGCCGCCGCCGC
CGCCGCCAGAAGCGGGCCAGGCGCCATCCCCAGGCCCGGGGGCGGCCGCA
GCGGGTCCGGGAAGGCCTCGGGGGGCAGGCCGGCGTCCGCGAGGGCGGAC
AGCACGTTCTCCCGGAGCGCCACCTCCGCGGACGCCTCCGGCACCTCCAA
CAAAGCCTGCTCGGCGGCGGCATCGGCATCTGCGGCAGCGGCAGCAGCAC
CAGCGGTGGCAGTGGCAGCGCTGCCGGCGGCTGTACCGCTCCCGCTCCCC
ATTTGT
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