mRNA_S-ischiensis_contig9.20460.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig9.20460.1 vs. uniprot
Match: A0A6H5KP54_9PHAE (CULT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP54_9PHAE) HSP 1 Score: 158 bits (399), Expect = 2.250e-41 Identity = 85/141 (60.28%), Postives = 92/141 (65.25%), Query Frame = 1
Query: 220 DPTRFSFWLGANLPLDDADRQELLSVDSVVDRLRKEVEHLRREAAGEGQVLKCGLCLSMVGWRKESFTVPGAEGTVGAYVNPQGFVHQTVTLRRVFPDA--LTLEGEPTARDSWFPGYAWTIALCARCGECLGWRFTPTLP 636
DPT FSFWL ANLPLDD RQELL +DSVV RLR E++HL E L C C V W + FT+PGAEG VGAYVNP G+VHQTVT+R DA L L G P SWFPGYAWT A CA C E LGWRFT P
Sbjct: 420 DPTLFSFWLAANLPLDDVARQELLMLDSVVMRLRVEIKHLEESRRRE---LCCASCNRGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVR----DARNLVLVGIPEEEHSWFPGYAWTCAYCAFCMEHLGWRFTAIRP 553
BLAST of mRNA_S-ischiensis_contig9.20460.1 vs. uniprot
Match: D8LLP2_ECTSI (Protein cereblon n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLP2_ECTSI) HSP 1 Score: 157 bits (398), Expect = 2.350e-41 Identity = 84/141 (59.57%), Postives = 92/141 (65.25%), Query Frame = 1
Query: 220 DPTRFSFWLGANLPLDDADRQELLSVDSVVDRLRKEVEHLRREAAGEGQVLKCGLCLSMVGWRKESFTVPGAEGTVGAYVNPQGFVHQTVTLRRVFPDA--LTLEGEPTARDSWFPGYAWTIALCARCGECLGWRFTPTLP 636
DPT FSFWL ANLPLDD RQELL +DSVV RLR E++HL + E L C C V W + FT+PGAEG VGAYVNP G+VHQTVT+R DA L L G P SWFPGYAWT CA C E LGWRFT P
Sbjct: 367 DPTLFSFWLAANLPLDDDARQELLMLDSVVMRLRLEIKHLEQSRRRE---LCCASCDRGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVR----DARNLVLVGTPEEEHSWFPGYAWTCVYCAFCNEHLGWRFTAIRP 500
BLAST of mRNA_S-ischiensis_contig9.20460.1 vs. uniprot
Match: A0A835YMI6_9STRA (Protein cereblon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMI6_9STRA) HSP 1 Score: 142 bits (359), Expect = 9.480e-36 Identity = 73/132 (55.30%), Postives = 87/132 (65.91%), Query Frame = 1
Query: 232 FSFWLGANLPLDDADRQELLSVDSVVDRLRKEVEHLRREAAGEGQVLKCGLCLSMVGWRKESFTVPGAEGTVGAYVNPQGFVHQTVTLRRVFPDALTLEGEPTARDSWFPGYAWTIALCARCGECLGWRFTP 627
FSFWL ++LPL D RQ LL +SVV+RLR V HL+R A L+C C + + +F+VPGAEG VGAYVNP GFVHQT+TLR L PTA DSWFPG+AWT+A C RC LGW+FTP
Sbjct: 332 FSFWLASSLPLGDDARQALLETNSVVERLRAGVRHLQRAAK---LPLRCAHCNTPIAQPSHAFSVPGAEGAVGAYVNPAGFVHQTITLREARNVRLQAV-PPTATDSWFPGFAWTVAYCRRCDAHLGWKFTP 459
BLAST of mRNA_S-ischiensis_contig9.20460.1 vs. uniprot
Match: A0A7S4N2B1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N2B1_9STRA) HSP 1 Score: 135 bits (341), Expect = 4.480e-33 Identity = 73/142 (51.41%), Postives = 89/142 (62.68%), Query Frame = 1
Query: 220 DPTRFSFWLGANLPLDDADRQELLSVDSVVDRLRKEVEHLRREAAGEGQVL--KCGLCLSMVGWRKESFTVPGAEGTVGAYVNPQGFVHQTVTLRRVFPDALTLEGEPTARDSWFPGYAWTIALCARCGECLGWRFTPTLPR 639
DP FS WL ANLPL D DR +LL V RLR + + R+ + + V +CG +S VG FTV GAEGT GAYVN G VHQT+T+R V +A+ GEP RDSWFPGY+WTIA C+ C LGW+F P +PR
Sbjct: 505 DPPVFSHWLSANLPLPDLDRIDLLETRCPVQRLRFLLGKIVRQRSVDRPVRCKRCGAEVSSVG---RMFTVGGAEGTTGAYVNAHGVVHQTITVRSVQREAVLCFGEPEVRDSWFPGYSWTIAHCSLCHSHLGWKFLPAVPR 643
BLAST of mRNA_S-ischiensis_contig9.20460.1 vs. uniprot
Match: A0A3M6U5D7_POCDA (Protein cereblon n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6U5D7_POCDA) HSP 1 Score: 128 bits (322), Expect = 2.840e-31 Identity = 64/136 (47.06%), Postives = 92/136 (67.65%), Query Frame = 1
Query: 217 RDPTRFSFWLGANLPLDDADRQELLSVDSVVDRLRKEVEHLRREAAGEGQVLKCGLCLSMVGWRKESFTVPGAEGTVGAYVNPQGFVHQTVTLRRVFPDALTLEGEPTARDSWFPGYAWTIALCARCGECLGWRFT 624
R P FSFW+ AN+PLDD+ R ++L ++ RLRKE+E +R+ + VL C C + + + + F++ +G +GAYVNP G+VH+T+T R + L G+PTA++SWFPGYAWTIA CA+C + LGWRFT
Sbjct: 274 RSPLDFSFWVAANMPLDDSLRLQILGINCPTQRLRKELEIVRKCS-----VLCCRSCDTKIVEKSDLFSM-SLDGPLGAYVNPNGWVHETLTFYRA--SGIRLRGKPTAQNSWFPGYAWTIAECAQCADHLGWRFT 401
BLAST of mRNA_S-ischiensis_contig9.20460.1 vs. uniprot
Match: A7S6W7_NEMVE (Protein cereblon (Fragment) n=5 Tax=Nematostella vectensis TaxID=45351 RepID=A7S6W7_NEMVE) HSP 1 Score: 127 bits (319), Expect = 3.970e-31 Identity = 63/134 (47.01%), Postives = 88/134 (65.67%), Query Frame = 1
Query: 223 PTRFSFWLGANLPLDDADRQELLSVDSVVDRLRKEVEHLRREAAGEGQVLKCGLCLSMVGWRKESFTVPGAEGTVGAYVNPQGFVHQTVTLRRVFPDALTLEGEPTARDSWFPGYAWTIALCARCGECLGWRFT 624
PT FSFW+ ANLPLDD R ++L+++ RLRKE+ +++ + VL C C S + ++ E F++ +G +GAYVNP GFVH+T+T + + L G PTA +SWFPGYAWTIA C +C LGWRF+
Sbjct: 246 PTEFSFWIAANLPLDDRLRLQILTINCPTQRLRKELSIMQKCS-----VLCCRDCNSTIAYKNELFSM-SLDGPLGAYVNPGGFVHETLTFYKAL--GIRLRGHPTAENSWFPGYAWTIAECQQCSNHLGWRFS 371
BLAST of mRNA_S-ischiensis_contig9.20460.1 vs. uniprot
Match: A0A6P8IV65_ACTTE (Protein cereblon n=2 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IV65_ACTTE) HSP 1 Score: 127 bits (320), Expect = 5.410e-31 Identity = 65/136 (47.79%), Postives = 89/136 (65.44%), Query Frame = 1
Query: 217 RDPTRFSFWLGANLPLDDADRQELLSVDSVVDRLRKEVEHLRREAAGEGQVLKCGLCLSMVGWRKESFTVPGAEGTVGAYVNPQGFVHQTVTLRRVFPDALTLEGEPTARDSWFPGYAWTIALCARCGECLGWRFT 624
+DP FS+W+ ANLPLDD+ + ELL VDS +RLRKE++ + R + VL CG C + + ++ + F + +G + AYVNP G+VH+T+T + + L G PTA +SWFPGYAWTIA C C LGWRFT
Sbjct: 280 KDPIDFSYWVAANLPLDDSLKLELLYVDSTTERLRKELKMMYRCS-----VLCCGDCNTTICYKNDLFCM-SLDGPLAAYVNPSGWVHETLTFYKA--TGVRLRGRPTAENSWFPGYAWTIAECMHCHNHLGWRFT 407
BLAST of mRNA_S-ischiensis_contig9.20460.1 vs. uniprot
Match: UPI0009E345C9 (protein cereblon-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E345C9) HSP 1 Score: 124 bits (310), Expect = 4.500e-30 Identity = 62/131 (47.33%), Postives = 89/131 (67.94%), Query Frame = 1
Query: 232 FSFWLGANLPLDDADRQELLSVDSVVDRLRKEVEHLRREAAGEGQVLKCGLCLSMVGWRKESFTVPGAEGTVGAYVNPQGFVHQTVTLRRVFPDALTLEGEPTARDSWFPGYAWTIALCARCGECLGWRFT 624
FSFW+ AN+PLDD+ R ++LS++ +RLRKE+E +R+ VL C C + + + + F++ +G +GAYVNP G+VH+ +T R + L G+PTA +SWFPGYAWTIA CA+C + LGWRFT
Sbjct: 195 FSFWVAANMPLDDSLRLQILSINCATERLRKELEIVRKCT-----VLCCRGCDTKIVDKNDLFSM-SLDGPLGAYVNPHGWVHEALTFYRA--TGIKLRGKPTAENSWFPGYAWTIAECAQCSDHLGWRFT 317
BLAST of mRNA_S-ischiensis_contig9.20460.1 vs. uniprot
Match: UPI001CF4E721 (protein cereblon-like isoform X1 n=6 Tax=Acropora TaxID=6127 RepID=UPI001CF4E721) HSP 1 Score: 125 bits (314), Expect = 4.930e-30 Identity = 63/136 (46.32%), Postives = 86/136 (63.24%), Query Frame = 1
Query: 217 RDPTRFSFWLGANLPLDDADRQELLSVDSVVDRLRKEVEHLRREAAGEGQVLKCGLCLSMVGWRKESFTVPGAEGTVGAYVNPQGFVHQTVTLRRVFPDALTLEGEPTARDSWFPGYAWTIALCARCGECLGWRFT 624
+ PT FSFW+ AN+PLDD R ++L +D RLR+E+E +R+ A C C + + + + F++ +G +GAYVNP G VH+T+T R + L G PT +SWFPGYAWTIA CA+CG LGWRFT
Sbjct: 300 KTPTEFSFWVAANMPLDDDLRLQVLGIDCPTQRLRRELEIVRKCGA-----FCCSECDTKIAEKGDLFSM-SLDGPLGAYVNPNGCVHETLTFYRA--KSFRLRGRPTTENSWFPGYAWTIAECAQCGNHLGWRFT 427
BLAST of mRNA_S-ischiensis_contig9.20460.1 vs. uniprot
Match: A0A7S3DZW2_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S3DZW2_9CHLO) HSP 1 Score: 118 bits (296), Expect = 5.430e-30 Identity = 62/145 (42.76%), Postives = 83/145 (57.24%), Query Frame = 1
Query: 217 RDPTRFSFWLGANLPLDDADRQELLSVDSVVDRLRKEVEHLRREAAGEGQVLKCGLCLSMVGWRKESFTVPGAEGTVGAYVNPQGFVHQTVTLRRVFPDALTLEGEPTARDSWFPGYAWTIALCARCGECLGWRFTPTLPRAQLR 651
RDP +FSFW+ + LPLD +QELL +D DRL E+ +++ VL C +C + + E F + + G G +VN GF+H VTL R+ L+GEP WFPGYAWTIA C RCG LGW+FT + + LR
Sbjct: 15 RDPVQFSFWIASALPLDSGKQQELLEMDGTNDRLLAEIAAMKKML---DNVLCCAVCDANISLSSEIFRMTDSLG--GVFVNTHGFLHDIVTLLRI--KGAALQGEPETAHCWFPGYAWTIANCKRCGSHLGWKFTEAVQGSGLR 152 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig9.20460.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig9.20460.1 >prot_S-ischiensis_contig9.20460.1 ID=prot_S-ischiensis_contig9.20460.1|Name=mRNA_S-ischiensis_contig9.20460.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=227bp AATAWPHRRAFGMLPTPAFALRLFSPEALVEEAGALLARVQARDGVDAGSback to top mRNA from alignment at S-ischiensis_contig9:533567..536003+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig9.20460.1 ID=mRNA_S-ischiensis_contig9.20460.1|Name=mRNA_S-ischiensis_contig9.20460.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2437bp|location=Sequence derived from alignment at S-ischiensis_contig9:533567..536003+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig9:533567..536003+ >mRNA_S-ischiensis_contig9.20460.1 ID=mRNA_S-ischiensis_contig9.20460.1|Name=mRNA_S-ischiensis_contig9.20460.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1362bp|location=Sequence derived from alignment at S-ischiensis_contig9:533567..536003+ (Schizocladia ischiensis KU_0333)back to top |